View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290-Insertion-12 (Length: 350)
Name: NF5290-Insertion-12
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290-Insertion-12 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 350
Target Start/End: Complemental strand, 31630918 - 31630583
Alignment:
| Q |
8 |
acaagcacctgaaaatcatcacatgcatataggtttgtaaatttatcttctttaaaacttaaaagtgcaagctaattgacacaatcaccttagatttatt |
107 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| |
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| T |
31630918 |
acaagcacctgaaaagtatcacatgcatataggtttgtaaatttatcttctttaaaa-------gtgcaagctcattgacacaatcaccttagtgttatt |
31630826 |
T |
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| Q |
108 |
aagataataataagagcaactaactaaccatgcaaactcgatggatctaaagctccatctggcttcatgctccaaaaaagtaatgcatcacccatctttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31630825 |
aagataataataagagcaactaactaaccatgcaaactcgatggatctaaagttccatctggcttcatgctccaaaaaagtaatgcatcacccatctttg |
31630726 |
T |
|
| Q |
208 |
gcttaattgaaagtccnnnnnnnccacaatccgaaagctcattccaccaaggcacagagctaatattccccttggcagctgggaacactgtctcaccccc |
307 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31630725 |
gcttaattgaaagtcctttttttccacaatccgaaagctcattccaccaaggcacagagctaatattccccttggcagctgggaacactgtctcaccccc |
31630626 |
T |
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| Q |
308 |
ttcttcaacatctgaactgtataatccatttacaaaaagtgga |
350 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31630625 |
ttcttcaacatctgaactgtataatcaatttacaaaaagtgga |
31630583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 130 - 329
Target Start/End: Complemental strand, 31646829 - 31646630
Alignment:
| Q |
130 |
actaaccatgcaaactcgatggatctaaagctccatctggcttcatgctccaaaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnn |
229 |
Q |
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|||||||||||| |||| ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31646829 |
actaaccatgcatactcagtggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaagtcctttttt |
31646730 |
T |
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| Q |
230 |
nccacaatccgaaagctcattccaccaaggcacagagctaatattccccttggcagctgggaacactgtctcacccccttcttcaacatctgaactgtat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||| |||||||||||||||||||||||||||| |||| ||||| |
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| T |
31646729 |
tccacaatccgaaagctcattccaccaaggcacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaattgtat |
31646630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 138 - 345
Target Start/End: Complemental strand, 31657136 - 31656929
Alignment:
| Q |
138 |
tgcaaactcgatggatctaaagctccatctggcttcatgctccaaaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnnnccacaat |
237 |
Q |
| |
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|||||||||||||||||||||| | |||| |||||||||||||| ||||||| |||| ||||||||||||||||||||| ||||| ||||||| |
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| T |
31657136 |
tgcaaactcgatggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgacagtcctccttttccacaat |
31657037 |
T |
|
| Q |
238 |
ccgaaagctcattccaccaaggcacagagctaatattccccttggcagctgggaacactgtctcacccccttcttcaacatctgaactgtataatccatt |
337 |
Q |
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| ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||||||| ||||||||| ||| | | |
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| T |
31657036 |
cggaaagctcattccaccaaggcacagagctaaaatttcccttggcatttgggaacaccgtctcacccccttcttcaacatccgaactgtattatcgaat |
31656937 |
T |
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| Q |
338 |
tacaaaaa |
345 |
Q |
| |
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|||||||| |
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| T |
31656936 |
tacaaaaa |
31656929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 138 - 345
Target Start/End: Complemental strand, 31652332 - 31652125
Alignment:
| Q |
138 |
tgcaaactcgatggatctaaagctccatctggcttcatgctccaaaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnnnccacaat |
237 |
Q |
| |
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|||||||||||||||||||||| | |||| |||||||||||||| ||||||| |||| ||||||||||||||||||||| ||||| ||||||| |
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| T |
31652332 |
tgcaaactcgatggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgatagtcctccttttccacaat |
31652233 |
T |
|
| Q |
238 |
ccgaaagctcattccaccaaggcacagagctaatattccccttggcagctgggaacactgtctcacccccttcttcaacatctgaactgtataatccatt |
337 |
Q |
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| ||||||||||||||||||||||||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||| ||||||||||||||| ||| | | |
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| T |
31652232 |
cggaaagctcattccaccaaggcacagagctaaaatttcccttggcatttggaaacaccgtctcacccccttcttcgacatctgaactgtatcatcgaat |
31652133 |
T |
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| Q |
338 |
tacaaaaa |
345 |
Q |
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|||||||| |
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| T |
31652132 |
tacaaaaa |
31652125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 130 - 329
Target Start/End: Complemental strand, 31638125 - 31637926
Alignment:
| Q |
130 |
actaaccatgcaaactcgatggatctaaagctccatctggcttcatgctccaaaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnn |
229 |
Q |
| |
|
|||||||||| | |||| ||||||||| | | |||| |||||||||| ||| ||||||| |||| ||||||||||||||||||||||||||| |
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| T |
31638125 |
actaaccatgaacactcaatggatctacggttgcatcaggcttcatgccccagaaaagtatagcattacccatctttggcttaattgaaagtcccttttt |
31638026 |
T |
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| Q |
230 |
nccacaatccgaaagctcattccaccaaggcacagagctaatattccccttggcagctgggaacactgtctcacccccttcttcaacatctgaactgtat |
329 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31638025 |
tccacaatcagaaagctcattccaccaaggcacagagctaaaatttcccttagcagatggaaacactgtctcacccccttcttcaacatctgaactgtat |
31637926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 31652459 - 31652411
Alignment:
| Q |
8 |
acaagcacctgaaaatcatcacatgcatataggtttgtaaatttatctt |
56 |
Q |
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||||||||||||||||||||||| || ||||||||||||||| ||||| |
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| T |
31652459 |
acaagcacctgaaaatcatcacagacagataggtttgtaaattcatctt |
31652411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 31657263 - 31657215
Alignment:
| Q |
8 |
acaagcacctgaaaatcatcacatgcatataggtttgtaaatttatctt |
56 |
Q |
| |
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|||||||||||||||| ||||||| || |||||||| |||||| ||||| |
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| T |
31657263 |
acaagcacctgaaaattatcacatacagataggtttttaaattcatctt |
31657215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 129 - 329
Target Start/End: Original strand, 9104726 - 9104926
Alignment:
| Q |
129 |
aactaaccatgcaaactcgatggatctaaagctccatctggcttcatgctccaaaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnn |
228 |
Q |
| |
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|||||||||||||| || |||| |||||||| | |||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||| |
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| T |
9104726 |
aactaaccatgcaagcttgatgcatctaaagttgcatccggcttcatgctccagaaaagtaaagcatcacctctctttggcttaattgaaagtccttttt |
9104825 |
T |
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| Q |
229 |
nnccacaatccgaaagctcattccaccaaggcacagagctaatattccccttggcagctgggaacactgtctcacccccttcttcaacatctgaactgta |
328 |
Q |
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|||||||| ||||||||||| |||| |||||| || | ||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
9104826 |
tcccacaatcagaaagctcattataccacggcacattactgaaattccccttagcagcagggaacactgtctcacccccttcttcaacatctgtactgta |
9104925 |
T |
|
| Q |
329 |
t |
329 |
Q |
| |
|
| |
|
|
| T |
9104926 |
t |
9104926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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