View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290-Insertion-13 (Length: 349)
Name: NF5290-Insertion-13
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290-Insertion-13 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 14103258 - 14103394
Alignment:
| Q |
8 |
tttcatgtctaaacagccatgattgaggacttgtttgaacgcaattctcaacgatatcaaggattgctacacagccaaaattcaagtgactcgcaagata |
107 |
Q |
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| T |
14103258 |
tttcatgtctaaacaaccatgattgaggacttgtttgaacgcaattctcaacgatatcaaggattgctacacagccaaaatttaagtgactcgcaagata |
14103357 |
T |
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| Q |
108 |
tgaagccaaatacaaaatggtataaaccatagcaaaa |
144 |
Q |
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| T |
14103358 |
tgaagccaaatacaaaatggtataaaacatagcaaaa |
14103394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 295
Target Start/End: Original strand, 14129388 - 14129508
Alignment:
| Q |
171 |
atgcagtttacag-acaagcttgcattgcctcatcacttttgtgttcaaaatcaaatcagcccactaagaaagaatccctgctcttccataaaccgattc |
269 |
Q |
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| T |
14129388 |
atgcagttgacaggacaagcttgaattgcctcatcaatttggggttca-----gaatcagcccactgagaaacaacccttgctcttccataaactgattc |
14129482 |
T |
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| Q |
270 |
tatagcaaaagtcttttcatctaaca |
295 |
Q |
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| T |
14129483 |
tatagcaaaagtcttttcagctaaca |
14129508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 14086358 - 14086449
Alignment:
| Q |
41 |
tttgaacgcaattctcaacgatatcaaggattgctacacagccaaaattcaagtgactcgcaagatatgaagccaaatacaaaatggtataa |
132 |
Q |
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| T |
14086358 |
tttgaccgcaattctcaacaatttcaaggatcgatacacgaccaaaatttatgtgattcacaagatatgaagccaaatgcagaatgttataa |
14086449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 14129303 - 14129358
Alignment:
| Q |
73 |
gctacacagccaaaattcaagtgactcgcaagatatgaagccaaatacaaaatggt |
128 |
Q |
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| T |
14129303 |
gctacacgaccaaaatttaagtaactcacaagatatgaagccaaatacataatggt |
14129358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 14117885 - 14117942
Alignment:
| Q |
231 |
ccactaagaaagaatccctgctcttccataaaccgattctatagcaaaagtcttttca |
288 |
Q |
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| T |
14117885 |
ccactgagaaacaatctttgctcttccataaactgattctatagtaaaagttttttca |
14117942 |
T |
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