View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290-Insertion-5 (Length: 600)
Name: NF5290-Insertion-5
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 8 - 600
Target Start/End: Complemental strand, 42223731 - 42223139
Alignment:
| Q |
8 |
attgttttctgtggcgcagctgattctatatgcaacctattacaaatccacgaagatgcaaatagctgccagaaaagccaacaaaatagaggtggacctg |
107 |
Q |
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| T |
42223731 |
attgttttctgtggcgcagctgattctatatgcaacctattacaaatccacgaagatgcaaatagctgccagaaaagccaacaaaatagaggtggacctg |
42223632 |
T |
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| Q |
108 |
tcgcaggttgtggttgctaatggtaaccaacggtccaagtaaaattattgatcatgatggattaatgtggaaggccgacagactcgtctaacctcccatt |
207 |
Q |
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| T |
42223631 |
tcgcaggttgtggttgctaatggtaacaaacagtccaagtaaaattattgatcatgatggattaatgtggaaggccgacagactcgtctaacctcccatt |
42223532 |
T |
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| Q |
208 |
tcatcattgctactataaaattatgggaaatgctaatttatccttatcatctttcgttttccatccaaccttgttgggatgttttgtttttaaagatgca |
307 |
Q |
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| T |
42223531 |
tcatcattgctactataaaattatgggaaatgctaatttatccttatcatttttcgttttccatccaatcttgttgggatgttttgtttttaaagatgca |
42223432 |
T |
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| Q |
308 |
attttatcattgcctaaagcaatgcctgaagtttattaagcagcacacttctcttacagagttgcacttgcatcttttgggctgaaatgtaatcagatcg |
407 |
Q |
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| T |
42223431 |
attttatcattgcctaaagcaatgcctgaagtttattaagcagcacacttctcttacagagttgcacttgcatcttttgggctgaaatgtaatcagatca |
42223332 |
T |
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| Q |
408 |
catccacccaccagaattttaatttataaatatcttcttagtcaatttcatttcaccatattaattgttatttaccaagtaacagtcttcaggagcacat |
507 |
Q |
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| T |
42223331 |
catccacccaccagaattttaatttataaatatcttcttagtcaatttcatttcaccatattaattgttatttaccaagtaacagtcttcaggagcacat |
42223232 |
T |
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| Q |
508 |
tatgttatagaatacgttattcacgactttgatgttgaggtgggtgggaaaaaatttacattccaaaaagccccttacacagagaataataac |
600 |
Q |
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| T |
42223231 |
tatgttatagaatacgttattcacgactttgatgttgagatgggtgggaaaaaatttacattccaaaaagccccttacacagagaataataac |
42223139 |
T |
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