View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5290-Insertion-6 (Length: 639)
Name: NF5290-Insertion-6
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290-Insertion-6 |
 | |
|
| [»] scaffold0283 (1 HSPs) |
| | |
|
| [»] scaffold0606 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-169; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 7 - 369
Target Start/End: Complemental strand, 44003230 - 44002862
Alignment:
| Q |
7 |
acaaacaattctatctttctatatattttacctaaaattgatcaaacaactctg------ataaaagaatattgatcatgattccctaaaatttcgccat |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44003230 |
acaaacaactctatctttctatatattttacctaaaattgatcaaacaactctcccattaataaaagaatattgatcatgattccctaaaatttcgccat |
44003131 |
T |
|
| Q |
101 |
gaatttctttactactactataaaatacgagattggttgtgtatgcataatgtggaatataatattttcctaaaatatttgacttgcaggagcactagtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44003130 |
gaatttctttactactactataaaatacaagattggttgtgtatgcataacgtggaatataatattttcctaaaatatttgacttgcaagagcactagtc |
44003031 |
T |
|
| Q |
201 |
tagcatgccgcacaccagacccgatcttagaggagtgcaaacagctcaactaagttgggcctctaaaatgtatgggcctaaaaataatatagcctaatat |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44003030 |
taccatgccgcacaccagacccgatcttagaggagtgcaaacagctcaactaagttaggcctctaaaatgtatgggcctaaaaataatatagcctaatat |
44002931 |
T |
|
| Q |
301 |
ccacaccccgtttaaataacaaaaacatatgttccttctttttctttcttcggtacgcggttgggtttc |
369 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44002930 |
ccacaccccattcaaataacaaaaacatattttccttcttcttctttcttcggtacgcggttgggtttc |
44002862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 387 - 638
Target Start/End: Original strand, 19808903 - 19809151
Alignment:
| Q |
387 |
gctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaat |
486 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||| ||| | |
|
|
| T |
19808903 |
gctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga---aaagt |
19808999 |
T |
|
| Q |
487 |
actaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcat |
586 |
Q |
| |
|
||| |||||||| ||| |||||| |||||||| |||||||||||| |||||| |||| || ||| ||||| |||||||||||| ||||||||||| |||| |
|
|
| T |
19809000 |
actgaaaattctctggtggttcttggttttctactgcttttgtcagtttatgaattgcttacttattttgatgaagatgaagtcttggagcttttcgcat |
19809099 |
T |
|
| Q |
587 |
ctgttgctcagcacaagatagctattgaactgtttgagaccgtgggttttgc |
638 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||| ||||| |||||||||| |
|
|
| T |
19809100 |
ttgttgctcagcacaagacagccgtggaactgtttcagaccctgggttttgc |
19809151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 347
Target Start/End: Original strand, 28105635 - 28105727
Alignment:
| Q |
258 |
ggcctctaaaatgtatgggcctaaaaataatatagcctaatatccacaccccgtttaaataa---caaaaacatatgttccttctttttcttt |
347 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||||||||||| | ||||||| | |||||| ||||||| ||||||||||||||||||| |
|
|
| T |
28105635 |
ggcctctaaaatgcacgggcctaaaaaaaatatagcctaattccaacaccccactcaaataaaataaaaaacacatgttccttctttttcttt |
28105727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 356
Target Start/End: Original strand, 25061748 - 25061836
Alignment:
| Q |
271 |
tatgggcctaaaaataatat--agcctaatatccacaccccgtttaaataacaaaaaca-tatgttccttctttttctttcttcggtac |
356 |
Q |
| |
|
|||||||||||||| || || || ||||||||||| ||| |||||||| ||||| | |||||| |||||||||||||||||||||| |
|
|
| T |
25061748 |
tatgggcctaaaaaaaaaattaagtctaatatccaccccctacttaaataaaaaaaaaaatatgttacttctttttctttcttcggtac |
25061836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 356
Target Start/End: Original strand, 41908064 - 41908108
Alignment:
| Q |
311 |
tttaaataacaaaaacatatgttccttctttttctttcttcggtac |
356 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
41908064 |
tttaaataaaaaaaa-atatgttacttctttttctttcttcggtac |
41908108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 3799925 - 3799877
Alignment:
| Q |
321 |
aaaaacatatgttccttctttttctttcttcggtacgcggttgggtttc |
369 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| |||||| ||||||||| |
|
|
| T |
3799925 |
aaaaacataggtttcttctttttctttcttcattacgcgtttgggtttc |
3799877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 27)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 376 - 638
Target Start/End: Original strand, 39216646 - 39216908
Alignment:
| Q |
376 |
catatttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaaca |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39216646 |
catatttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaaca |
39216745 |
T |
|
| Q |
476 |
tgagtgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttgga |
575 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39216746 |
tgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttttgtcaatttatggattggttacttcttttggtgaagatgaagttttgga |
39216845 |
T |
|
| Q |
576 |
gctttttgcatctgttgctcagcacaagatagctattgaactgtttgagaccgtgggttttgc |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39216846 |
gctttttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgc |
39216908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 387 - 638
Target Start/End: Complemental strand, 39396834 - 39396583
Alignment:
| Q |
387 |
gctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaat |
486 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||| | || |||| || |||||| |
|
|
| T |
39396834 |
gctagaagaactgatgagaatctcaccaactattagaccttgtgtaagagaagaagcactgaagctagcacatgatttgagagcttacattagagaaaat |
39396735 |
T |
|
| Q |
487 |
actaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcat |
586 |
Q |
| |
|
||| ||||||||||||||||||| |||||| | ||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
39396734 |
actgaaaattctttggcggttcttggttttttgttgcttttgtcaatttatggattgcttacttctttcgatgaagatgaagttttggagctttttgcat |
39396635 |
T |
|
| Q |
587 |
ctgttgctcagcacaagatagctattgaactgtttgagaccgtgggttttgc |
638 |
Q |
| |
|
| |||||||||||||||| |||||| || |||||||||||| |||||||||| |
|
|
| T |
39396634 |
cggttgctcagcacaagacagctatggagctgtttgagaccctgggttttgc |
39396583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 387 - 638
Target Start/End: Original strand, 39371117 - 39371368
Alignment:
| Q |
387 |
gctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaat |
486 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| | |||||||||||||| |||||||||||||||||| ||||| ||||| | ||||||| |||||| |
|
|
| T |
39371117 |
gctagaacaacttatgaaaatctcaccaaatattgagccttgtgtaagagatgaagcattgaagctagcacttgatatgaaagccaacatgaaagaaaat |
39371216 |
T |
|
| Q |
487 |
actaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcat |
586 |
Q |
| |
|
| ||||||| |||||| |||||| |||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
39371217 |
agtaaaaatcctttggtggttcttggttttctattgcttttgtcaaattatggattggttacttcttttgatgaagatgaacttttggagctttttgcat |
39371316 |
T |
|
| Q |
587 |
ctgttgctcagcacaagatagctattgaactgtttgagaccgtgggttttgc |
638 |
Q |
| |
|
||||||| |||||||||||||||| || ||||||| ||| |||||||||| |
|
|
| T |
39371317 |
ttgttgctgagcacaagatagctatggagctgtttggaaccatgggttttgc |
39371368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 391 - 595
Target Start/End: Complemental strand, 39196688 - 39196484
Alignment:
| Q |
391 |
gaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatacta |
490 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| ||| |||||| |
|
|
| T |
39196688 |
gaacaactgatgagaatctcaccagatattaaaccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaacatgaatgacaatactg |
39196589 |
T |
|
| Q |
491 |
aaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgt |
590 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
39196588 |
aaaattctttggcggttcttggctttctgctgcttttgtcaatttataaattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgt |
39196489 |
T |
|
| Q |
591 |
tgctc |
595 |
Q |
| |
|
||||| |
|
|
| T |
39196488 |
tgctc |
39196484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 387 - 638
Target Start/End: Original strand, 39138646 - 39138894
Alignment:
| Q |
387 |
gctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaat |
486 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||||| |||||||||||||||||||||||||||| || || ||||| ||||||||| ||||| |
|
|
| T |
39138646 |
gctagaacaactgatgagaatctcaccgaagattaaacctgatgtaagagaagaagcattgaagctagcacttaatctgaaagctaacatga---aaaat |
39138742 |
T |
|
| Q |
487 |
actaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcat |
586 |
Q |
| |
|
||| |||||||| ||| ||||||||||||||| ||| |||||||| |||||| |||| || ||| ||||| |||||||||||| ||||||||||| ||| |
|
|
| T |
39138743 |
actgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttattttgatgaagatgaagtcttggagcttttcacat |
39138842 |
T |
|
| Q |
587 |
ctgttgctcagcacaagatagctattgaactgtttgagaccgtgggttttgc |
638 |
Q |
| |
|
||||||||||||||||| |||| | ||||||||| ||||| |||||||||| |
|
|
| T |
39138843 |
ttgttgctcagcacaagacagctgtggaactgtttaagaccctgggttttgc |
39138894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 387 - 638
Target Start/End: Complemental strand, 39421365 - 39421117
Alignment:
| Q |
387 |
gctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaat |
486 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| || ||||||||||| |||| ||| |||||| |
|
|
| T |
39421365 |
gctagaacaactgatgaaaatctcaccacatattaaaacttgtgtaaaagaagaagcattgaagctcgctcttgatttgaaagctaatatggaagaaaat |
39421266 |
T |
|
| Q |
487 |
actaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcat |
586 |
Q |
| |
|
||| ||||| ||||| ||||||||||||| ||||||||||||||||| ||||||| ||| ||| |||||||||||| |||||||||||||||| |
|
|
| T |
39421265 |
actgaaaataatttgg---ttctcggttttctactgcttttgtcaatttaccaattggttacttatttcaatgaagatgaagtgttggagctttttgcat |
39421169 |
T |
|
| Q |
587 |
ctgttgctcagcacaagatagctattgaactgtttgagaccgtgggttttgc |
638 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| |||||||||| |
|
|
| T |
39421168 |
ttgttgctcagcacaagatagcagttgagttgtttgagaccctgggttttgc |
39421117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 387 - 638
Target Start/End: Original strand, 39153059 - 39153310
Alignment:
| Q |
387 |
gctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaat |
486 |
Q |
| |
|
||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| || ||| |||||||||| |||| || | |||||| |
|
|
| T |
39153059 |
gctagaacaactgatgagaatctcaccgaagattaaaccttgtgtaagagaagaagcattgaaactcgcacatgatttgaaagctaaaataaaagaaaat |
39153158 |
T |
|
| Q |
487 |
actaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcat |
586 |
Q |
| |
|
||| |||||||||||| |||||| |||||||| ||| ||||||| ||||||||||||||| ||||||| | | |||||||||| |||||||||||||||| |
|
|
| T |
39153159 |
actgaaaattctttggtggttcttggttttctactggttttgtcgatttatggattggttacttctttcgataaagatgaagtcttggagctttttgcat |
39153258 |
T |
|
| Q |
587 |
ctgttgctcagcacaagatagctattgaactgtttgagaccgtgggttttgc |
638 |
Q |
| |
|
||||||||| ||||||| ||| | ||||| ||| |||| |||||||||| |
|
|
| T |
39153259 |
ttgttgctcaacacaagactgctgtggaactatttcggaccctgggttttgc |
39153310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 387 - 611
Target Start/End: Complemental strand, 39380676 - 39380452
Alignment:
| Q |
387 |
gctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaat |
486 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||| || ||||||||||||||||||| ||| ||||||| ||||||||||| || |||| || || ||| |
|
|
| T |
39380676 |
gctagaacaactgatgagagtctcaccgaatattgaagattgtgtaagagaagaagcactgacgctagcacttgatttgaaagcttacataagagagaat |
39380577 |
T |
|
| Q |
487 |
actaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcat |
586 |
Q |
| |
|
||| || ||||| |||||||||| || ||||| |||||||||||||||||||||||| || ||||||| | |||||||||| |||||||||||||||||| |
|
|
| T |
39380576 |
actgaagattctgtggcggttcttggatttctactgcttttgtcaatttatggattgcttacttctttcgatgaagatgaaattttggagctttttgcat |
39380477 |
T |
|
| Q |
587 |
ctgttgctcagcacaagatagctat |
611 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39380476 |
tggttgctcagcacaagatagctat |
39380452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 424 - 638
Target Start/End: Complemental strand, 39472909 - 39472695
Alignment:
| Q |
424 |
ccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggcggttctcggttttcttctgc |
523 |
Q |
| |
|
|||||||||| | |||| ||||||||||| ||| ||||||||||| |||||||| ||||||||| |||||||||||| ||||| |||||||| |||| |
|
|
| T |
39472909 |
ccttgtgtaaaaaaagacgcattgaagctcgcacttgatttgaaagttaacatgaaagaaaatactgaaaattctttggtagttcttggttttctactgc |
39472810 |
T |
|
| Q |
524 |
ttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaagatagctattgaactgtttga |
623 |
Q |
| |
|
||||||||||||||| |||| || ||||||||| |||||||||||| |||||||| || |||| |||||||||||||||||||||| | ||||||||| |
|
|
| T |
39472809 |
ttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaagatagctgtggaactgtttcg |
39472710 |
T |
|
| Q |
624 |
gaccgtgggttttgc |
638 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
39472709 |
gaccttgggttttgc |
39472695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 417 - 638
Target Start/End: Complemental strand, 44895259 - 44895038
Alignment:
| Q |
417 |
tattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggcggttctcggtttt |
516 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||| | | || ||| ||||||| | | ||||||| |||||||||||| |||||| |||||| |
|
|
| T |
44895259 |
tattaaacctcgtgtaagagaacaagcattgaagctagcacataaattcaaagctaacataaaaggaaatactgaaaattctttggtggttcttggtttt |
44895160 |
T |
|
| Q |
517 |
cttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaagatagctattgaac |
616 |
Q |
| |
|
|| |||||||||||||||||||||||| || ||||||| | ||||| |||||||||||||||||||||| |||||||||||||||||||||| | |||| |
|
|
| T |
44895159 |
ctactgcttttgtcaatttatggattgattacttctttcgatgaaggcgaagttttggagctttttgcatttgttgctcagcacaagatagctgtggaac |
44895060 |
T |
|
| Q |
617 |
tgtttgagaccgtgggttttgc |
638 |
Q |
| |
|
| ||| |||| | |||||||| |
|
|
| T |
44895059 |
tttttcggaccctcggttttgc |
44895038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 391 - 602
Target Start/End: Complemental strand, 39205920 - 39205709
Alignment:
| Q |
391 |
gaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatacta |
490 |
Q |
| |
|
||||||||||||| ||||||||| |||| |||||||||| |||||| |||||||||||||||||||||| |||||| |||| |||| ||||||||| |
|
|
| T |
39205920 |
gaacaactgatgagaatctcaccagttattgaaccttgtgtgagagaaaaagcattgaagctagcatttgacttgaaagctaagatgaaagaaaatactg |
39205821 |
T |
|
| Q |
491 |
aaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgt |
590 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||||||||| |||||| |||| ||| |||||||| | ||||||||||||| ||| |||| |||| ||| |
|
|
| T |
39205820 |
aaaattctatggcggttcttggttttctactgcttttgtcgatttataaattgcttgattcttttgataaagatgaagttttcgagattttggcatttgt |
39205721 |
T |
|
| Q |
591 |
tgctcagcacaa |
602 |
Q |
| |
|
||||| |||||| |
|
|
| T |
39205720 |
tgctctgcacaa |
39205709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 391 - 602
Target Start/End: Original strand, 39223715 - 39223926
Alignment:
| Q |
391 |
gaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatacta |
490 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||||||| |||||| |||||||||||||||||| |||||| ||| ||||||| || |||||| |
|
|
| T |
39223715 |
gaacaactgatgagaatctcaccagatattgaaccttgtgagagagaaaaagcattgaagctagcatatgatttaaaagaaaacatgaaagacaatactg |
39223814 |
T |
|
| Q |
491 |
aaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgt |
590 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||||||||||||||||| |||| ||| ||| |||| ||||||||||||| |||| |||||||||| ||| |
|
|
| T |
39223815 |
aaaaatctttggcggttcttggttttctgctgcttttgtcaatttataaattgcttgattcatttgatgaagatgaagttctggatctttttgcatttgt |
39223914 |
T |
|
| Q |
591 |
tgctcagcacaa |
602 |
Q |
| |
|
||||| |||||| |
|
|
| T |
39223915 |
tgctctgcacaa |
39223926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 387 - 594
Target Start/End: Complemental strand, 39387676 - 39387469
Alignment:
| Q |
387 |
gctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaat |
486 |
Q |
| |
|
||||||||||||||||| || |||||| | ||| || ||||||||| | ||||||||||||||||||| |||||| ||| ||||||||| |||||| |
|
|
| T |
39387676 |
gctagaacaactgatgagaacctcaccaaaaattgaaacttgtgtaaaaaaagaagcattgaagctagcgcgtgatttaaaagctaacatgaaagaaaat |
39387577 |
T |
|
| Q |
487 |
actaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcat |
586 |
Q |
| |
|
||| ||||||||||||| ||||| |||||||| |||||||||||||||||||| || ||| || ||||| |||||||||||||||||||||||||||| |
|
|
| T |
39387576 |
actgaaaattctttggccgttcttggttttctgctgcttttgtcaatttatgggctgcttgattattttgacgaagatgaagttttggagctttttgcat |
39387477 |
T |
|
| Q |
587 |
ctgttgct |
594 |
Q |
| |
|
||||||| |
|
|
| T |
39387476 |
ttgttgct |
39387469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 392 - 622
Target Start/End: Original strand, 39604321 - 39604551
Alignment:
| Q |
392 |
aacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaa |
491 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||| ||||||||||| | |
|
|
| T |
39604321 |
aacaactgatgagaatcaaaccacatattaaacctcgtgtaagagaagaagcaatgaagctagcacttaatttgaaatctaacataagtgaaaataccga |
39604420 |
T |
|
| Q |
492 |
aaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgtt |
591 |
Q |
| |
|
||||| |||| ||||| |||||||| || ||| |||||||||||||||||| | ||||||| | ||||||||||||||| ||||||| | | || | |
|
|
| T |
39604421 |
aaatttggtggcagttctgggttttctactccttgtgtcaatttatggattggctccttctttcgatgaagatgaagttttaaagcttttcgagtttgct |
39604520 |
T |
|
| Q |
592 |
gctcagcacaagatagctattgaactgtttg |
622 |
Q |
| |
|
|||||| ||||||||||| | || ||||||| |
|
|
| T |
39604521 |
gctcaggacaagatagctgtagagctgtttg |
39604551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 391 - 609
Target Start/End: Original strand, 39099591 - 39099809
Alignment:
| Q |
391 |
gaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatacta |
490 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||| ||| || | ||||||||| || ||||||| |||| |
|
|
| T |
39099591 |
gaacaactgatgagaatctcaccacatatcaaaccttgtgtaagagaagaagcgatgaagctggcacttaagttgaaatcttttataagtgaaactactg |
39099690 |
T |
|
| Q |
491 |
aaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgt |
590 |
Q |
| |
|
||||||| |||||||||| |||||||| || ||| ||||||||||| ||||| | ||||||||| ||||||||||||||| ||||||||| | || |
|
|
| T |
39099691 |
aaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgc |
39099790 |
T |
|
| Q |
591 |
tgctcagcacaagatagct |
609 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39099791 |
tgctcagcacaagatagct |
39099809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 443 - 635
Target Start/End: Complemental strand, 39478420 - 39478229
Alignment:
| Q |
443 |
cattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggatt |
542 |
Q |
| |
|
|||||||||||||| |||||||||| || |||| || ||||||||| ||||||||| ||| ||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
39478420 |
cattgaagctagcacatgatttgaaagcttacatcagagaaaatactgaaaattcttcggcagttcttgattttctactgcttttgtcaatttatggatt |
39478321 |
T |
|
| Q |
543 |
ggttgcttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaagatagctattgaactgtttgagaccgtgggttt |
635 |
Q |
| |
|
| || ||||||| | |||| ||||||||||||| ||||||||||||||||||| ||||||| |||||| || ||||||||||| ||||||| |
|
|
| T |
39478320 |
gcttacttctttcgaagaaggtgaagttttggag-tttttgcatctgttgctcaacacaagacagctatggagttgtttgagaccctgggttt |
39478229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 387 - 627
Target Start/End: Original strand, 44624782 - 44625022
Alignment:
| Q |
387 |
gctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaat |
486 |
Q |
| |
|
||||||| ||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |||||| ||||||||| |||||| |
|
|
| T |
44624782 |
gctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaat |
44624881 |
T |
|
| Q |
487 |
actaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcat |
586 |
Q |
| |
|
||| |||||| ||||| ||||||||| ||||| || ||||||| |||||||||||| | ||| ||||| |||||||||||| | ||||||||| || |
|
|
| T |
44624882 |
actgaaaattatttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaagatgaagtctaaaagctttttggat |
44624981 |
T |
|
| Q |
587 |
ctgttgctcagcacaagatagctattgaactgtttgagacc |
627 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
44624982 |
ctgttgctggatacaagatggctgaagaactgtttgagacc |
44625022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 421 - 609
Target Start/End: Complemental strand, 39413174 - 39412989
Alignment:
| Q |
421 |
aaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggcggttctcggttttcttc |
520 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||| |||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
39413174 |
aaaccttgtgtaa---aagaagcattgaagctagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttcttagttttctgt |
39413078 |
T |
|
| Q |
521 |
tgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaagatagct |
609 |
Q |
| |
|
||||||||||| ||| |||||||||| ||| ||| | |||||||||| | |||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
39413077 |
tgcttttgtcagtttgtggattggttacttttttggatgaagatgaaatcttggagctttttgcatttgttgctcaacacaagatagct |
39412989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 396 - 583
Target Start/End: Complemental strand, 39188927 - 39188740
Alignment:
| Q |
396 |
actgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaat |
495 |
Q |
| |
|
|||||||| |||||||||| | ||||||||| ||||||||| || ||| |||| |||||| ||||||| ||| ||||||||| ||||||| | |||| |
|
|
| T |
39188927 |
actgatgagaatctcacctgacattaaacctcatgtaagagaggatgcaatgaaactagcacttgatttaaaagctaacatgaaagaaaataatggaaat |
39188828 |
T |
|
| Q |
496 |
tctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttg |
583 |
Q |
| |
|
||||||| |||||| |||||||| || ||| | ||||||||||| |||||| ||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
39188827 |
tctttggtggttcttggttttctactccttctatcaatttatggtttggttccttctttcaatgaagatgatgttttaaagctttttg |
39188740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 405 - 638
Target Start/End: Complemental strand, 39425697 - 39425464
Alignment:
| Q |
405 |
aatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggcg |
504 |
Q |
| |
|
||||||||| |||||| |||| ||||| |||||||||| ||||| ||||| ||||||||||| ||||||| ||| |||| | | ||||||| ||| |
|
|
| T |
39425697 |
aatctcaccggatattagacctgatgtaaaagaagaagcaatgaagttagcacttgatttgaaagctaacataagtcaaaacaatgaaaattcagcggct |
39425598 |
T |
|
| Q |
505 |
gttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaaga |
604 |
Q |
| |
|
||||| |||||||| || ||| |||||||||||||| ||||| ||||||| | ||||| ||||||||| ||||||| | | |||| |||||||||| |
|
|
| T |
39425597 |
gttcttggttttctacttcttctgtcaatttatggactggttccttctttcgacgaagaagaagttttgaagcttttcgaacttgtttctcagcacaact |
39425498 |
T |
|
| Q |
605 |
tagctattgaactgtttgagaccgtgggttttgc |
638 |
Q |
| |
|
||||| | || ||||||| | || |||||||||| |
|
|
| T |
39425497 |
tagctgtagagctgtttggggccatgggttttgc |
39425464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 395 - 602
Target Start/End: Complemental strand, 39493613 - 39493406
Alignment:
| Q |
395 |
aactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaa |
494 |
Q |
| |
|
|||||| |||||||||||| |||||| |||| ||||| |||||||||| ||||||||||| ||||| ||||| ||||||| ||| |||| || |||| |
|
|
| T |
39493613 |
aactgaggaaaatctcaccagatattagacctcatgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaa |
39493514 |
T |
|
| Q |
495 |
ttctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgttgct |
594 |
Q |
| |
|
||| | |||||||| |||||||| || ||| |||||||||||||| ||||| | ||||| | ||| ||||| ||||| |||| |||| | |||| || |
|
|
| T |
39493513 |
ttcagttgcggttctaggttttctactccttctgtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttct |
39493414 |
T |
|
| Q |
595 |
cagcacaa |
602 |
Q |
| |
|
|||||||| |
|
|
| T |
39493413 |
cagcacaa |
39493406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 391 - 635
Target Start/End: Original strand, 2362683 - 2362927
Alignment:
| Q |
391 |
gaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatacta |
490 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||||||| ||| ||||||||||| ||||||||||| || | ||||| || |||| | ||||||||| |
|
|
| T |
2362683 |
gaacaactgatgagaatctcaccacatgttaaacctcatgtgcgagaagaagcaatgaagctagcacttaaactgaaagcttacattggcgaaaatactg |
2362782 |
T |
|
| Q |
491 |
aaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgt |
590 |
Q |
| |
|
||||| | || | ||||| || ||| | || ||| |||||||||||||||||||| ||||||| | |||||||||| |||| ||||||||| | || |
|
|
| T |
2362783 |
aaaatccagtgccagttctggggtttttgctccttctgtcaatttatggattggtttcttctttcgatgaagatgaaattttaaagctttttgggtttgc |
2362882 |
T |
|
| Q |
591 |
tgctcagcacaagatagctattgaactgtttgagaccgtgggttt |
635 |
Q |
| |
|
|||||| ||||||||| || | || ||||||| ||| ||||||| |
|
|
| T |
2362883 |
tgctcaacacaagatatctgtagagctgtttgggactatgggttt |
2362927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 387 - 569
Target Start/End: Original strand, 44615406 - 44615591
Alignment:
| Q |
387 |
gctagaacaactgatgaaaatctcacc---tcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaa |
483 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||| ||||||||||||| ||||| ||||||||||| | ||| |||||| ||||||||| ||| |
|
|
| T |
44615406 |
gctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaa |
44615505 |
T |
|
| Q |
484 |
aatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagt |
569 |
Q |
| |
|
||||| |||||||||||| || ||| || ||||| || |||| || ||||| ||||||||| || |||| |||||||||||| |
|
|
| T |
44615506 |
aataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaagatgaagt |
44615591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 395 - 622
Target Start/End: Original strand, 39144604 - 39144831
Alignment:
| Q |
395 |
aactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaa |
494 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| ||||| |||||||||| ||||||||||| ||||||||||| | || || ||| |||| || |||| |
|
|
| T |
39144604 |
aactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaagctagcacttgatttgaaagccaatataagtcaaaacacagaaaa |
39144703 |
T |
|
| Q |
495 |
ttctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgttgct |
594 |
Q |
| |
|
||| |||| |||| |||||||| || ||| ||||||||||||| ||| | | ||||| ||||||||| ||||| ||||||||| | |||| || |
|
|
| T |
39144704 |
ttcagcggcgattctaggttttctactccttctgtcaatttatgggctgggtccatctttcaatgaagatgatgttttaaagctttttggacttgtttct |
39144803 |
T |
|
| Q |
595 |
cagcacaagatagctattgaactgtttg |
622 |
Q |
| |
|
|||||| | |||||| | || ||||||| |
|
|
| T |
39144804 |
cagcacgacatagctgtagagctgtttg |
39144831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #25
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 391 - 485
Target Start/End: Original strand, 39126490 - 39126584
Alignment:
| Q |
391 |
gaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaa |
485 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| |||||||||| || | |||||||||||||| |||||||| |
|
|
| T |
39126490 |
gaacaactgatgagaatctcactaaatattgaacctcgtgtaagagaagaagcaatgaagctagctcttaaattgaaatctaacataagtgaaaa |
39126584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 18482861 - 18482791
Alignment:
| Q |
235 |
gtgcaaacagctcaactaagttgggcctctaaaatgtatgggccta-aaaataatatagcctaatatccac |
304 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||||||||||||||| |||| |||||||||||||| |||| |
|
|
| T |
18482861 |
gtgcaaaccgctcaatcgagttgggcctccaaaatgtatgggcctaaaaaaaaatatagcctaatacccac |
18482791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 542
Target Start/End: Complemental strand, 31606606 - 31606534
Alignment:
| Q |
470 |
ctaacatgagtgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggatt |
542 |
Q |
| |
|
||||||||| ||||||| || ||||||||||| |||||| |||||||| || ||| ||||||||||||||| |
|
|
| T |
31606606 |
ctaacatgaaagaaaataatagaaattctttggtggttcttggttttctactccttccgtcaatttatggatt |
31606534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 391 - 602
Target Start/End: Original strand, 33562293 - 33562504
Alignment:
| Q |
391 |
gaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatacta |
490 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
33562293 |
gaacaactgatgagaatctcaccagatattgaaccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaacatgaaagaaaatactg |
33562392 |
T |
|
| Q |
491 |
aaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgt |
590 |
Q |
| |
|
|| || |||||||||||| |||||||| ||||||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
33562393 |
aattttttttggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgt |
33562492 |
T |
|
| Q |
591 |
tgctcagcacaa |
602 |
Q |
| |
|
||||| |||||| |
|
|
| T |
33562493 |
tgctctgcacaa |
33562504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 387 - 625
Target Start/End: Original strand, 17060646 - 17060884
Alignment:
| Q |
387 |
gctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaat |
486 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||| ||||||||| ||| ||||| |||||||||||| ||| |||||| ||||||| | | |||| |
|
|
| T |
17060646 |
gctagaacaactgatgataatgtcaccaaatattaaatcttgtgtaaaagacgaagctttgaagctagcacatgagttgaaagctaacataaaagcaaat |
17060745 |
T |
|
| Q |
487 |
actaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcat |
586 |
Q |
| |
|
||| || |||| |||| ||||||||| ||||| || | ||||| ||||||||||| || ||| ||||| | |||||||||| ||||| |||||||||| |
|
|
| T |
17060746 |
actgaatattcattggaggttctcggatttctgttgatcttgtcggtttatggattgtttacttattttgatcaagatgaagtcttggatctttttgcat |
17060845 |
T |
|
| Q |
587 |
ctgttgctcagcacaagatagctattgaactgtttgaga |
625 |
Q |
| |
|
|||||||| ||||||||||| || | || |||||||||| |
|
|
| T |
17060846 |
ctgttgctgagcacaagatatctgtggagctgtttgaga |
17060884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 4177287 - 4177335
Alignment:
| Q |
321 |
aaaaacatatgttccttctttttctttcttcggtacgcggttgggtttc |
369 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
4177287 |
aaaaacacatgatccttctttttctttcttcagtacgcgtttgtgtttc |
4177335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 16060917 - 16060957
Alignment:
| Q |
312 |
ttaaataacaaaaacatatgttccttctttttctttcttcg |
352 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||||||||||||| |
|
|
| T |
16060917 |
ttaaataaaaaaaaaatatgttacttctttttctttcttcg |
16060957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 9e-44; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 388 - 606
Target Start/End: Original strand, 45342966 - 45343184
Alignment:
| Q |
388 |
ctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaata |
487 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||| |||| |||||| ||||| ||| | ||||| |
|
|
| T |
45342966 |
ctagaacaactgatgagaatcttgccaagtattaaaccttgtgtaagagaagaagcattcaagctagcacttgagttgaaagctaacgtgaaaggaaata |
45343065 |
T |
|
| Q |
488 |
ctaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatc |
587 |
Q |
| |
|
|| |||| || ||| ||||| |||||||| ||| ||||||||||| ||| |||| || ||||||||| | |||||||||| ||||||||||||| ||| |
|
|
| T |
45343066 |
ctgaaaaatcattgaacgttcttggttttctactgattttgtcaattcatgtattgcttacttcttttgataaagatgaagtcttggagctttttgtatc |
45343165 |
T |
|
| Q |
588 |
tgttgctcagcacaagata |
606 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
45343166 |
tgttgttcagcacaagata |
45343184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 426 - 609
Target Start/End: Original strand, 44730154 - 44730337
Alignment:
| Q |
426 |
ttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggcggttctcggttttcttctgctt |
525 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| ||| |||||| ||||||| | ||||||||| ||||||||| || ||||||||| ||||| || || |
|
|
| T |
44730154 |
ttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgatt |
44730253 |
T |
|
| Q |
526 |
ttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaagatagct |
609 |
Q |
| |
|
||| | |||||| ||||| || ||| |||| || ||||||||| | ||||||| |||||||||| | | |||||||||||| |
|
|
| T |
44730254 |
ttgacgatttatagattgcttacttactttgatggagatgaagtctctgagctttacgcatctgttgttgaacacaagatagct |
44730337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 510
Target Start/End: Complemental strand, 44950037 - 44949954
Alignment:
| Q |
427 |
tgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggcggttctc |
510 |
Q |
| |
|
||||| ||||| ||||| |||||||||||| ||| ||||||| ||| || | |||||||||||||||||||||| ||||||| |
|
|
| T |
44950037 |
tgtgttagagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctc |
44949954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 2546194 - 2546146
Alignment:
| Q |
321 |
aaaaacatatgttccttctttttctttcttcggtacgcggttgggtttc |
369 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
2546194 |
aaaaacatatgtttcttctttttctatcttcagtacgcgtttgggtttc |
2546146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 389 - 638
Target Start/End: Original strand, 16114369 - 16114618
Alignment:
| Q |
389 |
tagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatac |
488 |
Q |
| |
|
||||| ||||||||| ||| ||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||| || ||||||| || ||||| |
|
|
| T |
16114369 |
tagaagaactgatgagaatatcaccaactattaaacctcgtgtaagagaaaaagcattgaagctagcgcgcgatttgaaagcttacatgagagagaatac |
16114468 |
T |
|
| Q |
489 |
taaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatct |
588 |
Q |
| |
|
||||||||| | ||| ||| | |||||| | |||||||||||| ||||||||||| | ||| ||| | | || |||||||||||||||||||||||| |
|
|
| T |
16114469 |
taaaaattcatcggctgttgttggttttatgctgcttttgtcagtttatggattgctaacttatttcgataaatgcgaagttttggagctttttgcatct |
16114568 |
T |
|
| Q |
589 |
gttgctcagcacaagatagctattgaactgtttgagaccgtgggttttgc |
638 |
Q |
| |
|
|||||||||||||||| || ||| || |||||||||||| | |||||||| |
|
|
| T |
16114569 |
gttgctcagcacaagacagttatggagctgtttgagaccctcggttttgc |
16114618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 391 - 608
Target Start/End: Original strand, 51575989 - 51576206
Alignment:
| Q |
391 |
gaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatacta |
490 |
Q |
| |
|
|||||||| |||| ||||||||| ||||| |||||| |||| ||||||||||||||| |||| | |||||||| | |||| |||||||||||| |
|
|
| T |
51575989 |
gaacaactaatgagaatctcaccacatatcaaacctcatgtacaagaagaagcattgaaactagtcctcaatttgaaagcgtacattagtgaaaatactg |
51576088 |
T |
|
| Q |
491 |
aaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgt |
590 |
Q |
| |
|
||||||| ||| |||||| |||| ||| || ||| |||||||||||||||||||| ||| ||||| | |||||||| ||||| || ||||| || ||| |
|
|
| T |
51576089 |
aaaattccgtggtggttcttggttatctgctccttctgtcaatttatggattggttccttattttgataaagatgaaattttgaagtattttggatttgt |
51576188 |
T |
|
| Q |
591 |
tgctcagcacaagatagc |
608 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
51576189 |
tgctcagcacaaaatagc |
51576206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 504 - 608
Target Start/End: Original strand, 33152229 - 33152333
Alignment:
| Q |
504 |
ggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaag |
603 |
Q |
| |
|
|||||| |||||||| || ||| ||||||||||||| |||||| | ||||||| ||||||||||||||| ||||||||| | |||||||| |||||| |
|
|
| T |
33152229 |
ggttctgggttttctgctacttctgtcaatttatgggttggtttcatcttttgatgaagatgaagttttaaagctttttggaatcgttgctcaacacaag |
33152328 |
T |
|
| Q |
604 |
atagc |
608 |
Q |
| |
|
||||| |
|
|
| T |
33152329 |
atagc |
33152333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 510
Target Start/End: Complemental strand, 6017 - 5934
Alignment:
| Q |
427 |
tgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggcggttctc |
510 |
Q |
| |
|
||||| ||||| ||||| |||||||||||| ||| ||||||| ||| || | |||||||||||||||||||||| ||||||| |
|
|
| T |
6017 |
tgtgttagagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctc |
5934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0606 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0606
Description:
Target: scaffold0606; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 8646 - 8591
Alignment:
| Q |
233 |
gagtgcaaacagctcaactaagttgggcctctaaaatgtatgggcctaaaaataat |
288 |
Q |
| |
|
||||||||||||||||| || ||||||||| |||| |||||||||||||||||| |
|
|
| T |
8646 |
gagtgcaaacagctcaagcaaattgggcctccaaaagttatgggcctaaaaataat |
8591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 6333698 - 6333648
Alignment:
| Q |
306 |
ccccgtttaaataacaaaaacatatgttccttctttttctttcttcggtac |
356 |
Q |
| |
|
|||| ||||||||| ||||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
6333698 |
ccccatttaaataaaaaaaatatatgttacttatttttctttcttcggtac |
6333648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University