View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290-Insertion-7 (Length: 530)
Name: NF5290-Insertion-7
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 102 - 516
Target Start/End: Original strand, 33381896 - 33382310
Alignment:
| Q |
102 |
ttttaacttttattacatttacacctattaattgacagcnnnnnnnnnnnncaaatagcttgttagatgttatataataaaccgaacttcatctcccttc |
201 |
Q |
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| T |
33381896 |
ttttaacttttattacatttacacttattaattgacagcaaaaagaaaaaactaatagcttgttagatgttatataataaaccgaacttcatctcccttc |
33381995 |
T |
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| Q |
202 |
ctaaactttcccttcaaaagatgggtagtgaatatcacacttcacacannnnnnnctttccttttcttgctcgaggtcatgtgataccaatggttgacat |
301 |
Q |
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| T |
33381996 |
ccgcactttcccttcaaaagatgggtagtgaatatcacacttcacacatttttttctttccttttcttgctcgaggtcatgtgataccaatggttgacat |
33382095 |
T |
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| Q |
302 |
ggccaaattatttgctgcaaatggtgtcaaagccacaattattactacaccactcaataaaccttgtatctccaaatcaatagaaaaatccaaacttagt |
401 |
Q |
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| T |
33382096 |
ggccaaattatttgctgcaaaaggtgtcaaagccacaattattactacacccctcaataaaccttgtatctccaaatctatagaaaaatccaaacttagt |
33382195 |
T |
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| Q |
402 |
ggccacaatattcatatccaaaccataaaatttcctagctcagaggctggtttaccagatgggtgtgaaaatatggactcaatcccttcaccacaattct |
501 |
Q |
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| T |
33382196 |
ggccacaatattcatatccaaaccataaagtttcctagctcagaggctggtttaccagatgggtgtgaaaatatggactcaatcccttcaccacaattct |
33382295 |
T |
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| Q |
502 |
ttcctaagttttgta |
516 |
Q |
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| T |
33382296 |
ttcctaagttttgta |
33382310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 33381820 - 33381849
Alignment:
| Q |
8 |
cataccttgttaaccggttgttctcttgta |
37 |
Q |
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| T |
33381820 |
cataccttgttaaccggttgttctcttgta |
33381849 |
T |
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