View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5290-Insertion-8 (Length: 469)

Name: NF5290-Insertion-8
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5290-Insertion-8
NF5290-Insertion-8
[»] chr6 (5 HSPs)
chr6 (8-458)||(24480503-24480947)
chr6 (105-448)||(24470533-24470878)
chr6 (8-88)||(24470277-24470357)
chr6 (398-442)||(31720051-31720095)
chr6 (383-448)||(14758010-14758075)
[»] chr8 (5 HSPs)
chr8 (383-448)||(17687642-17687707)
chr8 (387-448)||(24634979-24635040)
chr8 (398-439)||(15598424-15598465)
chr8 (398-444)||(1210180-1210226)
chr8 (398-448)||(17879296-17879346)
[»] chr5 (3 HSPs)
chr5 (400-448)||(19903294-19903342)
chr5 (402-444)||(13545949-13545991)
chr5 (400-448)||(6037768-6037816)
[»] chr1 (8 HSPs)
chr1 (398-448)||(10153702-10153752)
chr1 (383-448)||(25399038-25399103)
chr1 (398-442)||(23917503-23917547)
chr1 (402-448)||(11105075-11105121)
chr1 (402-442)||(14968977-14969017)
chr1 (383-444)||(2819657-2819717)
chr1 (398-435)||(21684424-21684461)
chr1 (402-442)||(23486311-23486351)
[»] chr7 (8 HSPs)
chr7 (383-448)||(1878687-1878752)
chr7 (398-440)||(9762358-9762400)
chr7 (402-440)||(10254770-10254808)
chr7 (402-448)||(12598351-12598397)
chr7 (398-444)||(18362009-18362055)
chr7 (383-448)||(12222864-12222927)
chr7 (395-444)||(15467586-15467635)
chr7 (383-444)||(15871508-15871568)
[»] chr4 (6 HSPs)
chr4 (383-448)||(23087353-23087418)
chr4 (383-449)||(32491215-32491280)
chr4 (399-440)||(24619321-24619362)
chr4 (398-435)||(13693476-13693513)
chr4 (404-448)||(8860341-8860385)
chr4 (402-442)||(32468922-32468962)
[»] chr2 (5 HSPs)
chr2 (383-448)||(27939649-27939714)
chr2 (400-448)||(26704301-26704349)
chr2 (401-448)||(25564316-25564363)
chr2 (398-440)||(40202777-40202819)
chr2 (400-448)||(24109791-24109839)
[»] scaffold0340 (1 HSPs)
scaffold0340 (398-442)||(17636-17680)
[»] chr3 (8 HSPs)
chr3 (398-448)||(1463956-1464006)
chr3 (398-448)||(17769432-17769482)
chr3 (398-448)||(19070733-19070783)
chr3 (398-448)||(19658414-19658464)
chr3 (105-178)||(54480547-54480620)
chr3 (398-444)||(16305587-16305633)
chr3 (398-439)||(7921141-7921182)
chr3 (399-444)||(18122054-18122099)
[»] scaffold0859 (1 HSPs)
scaffold0859 (398-444)||(2656-2702)
[»] scaffold0043 (1 HSPs)
scaffold0043 (398-444)||(2216-2262)
[»] scaffold0010 (1 HSPs)
scaffold0010 (400-448)||(135831-135879)


Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 458
Target Start/End: Original strand, 24480503 - 24480947
Alignment:
Q  8 ctaattttaaaatatatgctaacctcccatacactcttatcaaataatcatacattccttcttagttattactgttactttatccattcnnnnnnncaa- 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| |||||       |||     
T  24480503 ctaattttaaaatatatgctaacctcccatacactcttatcaaataaacagacattccttcttagttattacttttactttatgcattcaaaaaaacaaa 24480602  T
Q  107 -gacataaagttttataatagcataattacaatttcgggaatgctgctataaaccaaaagcacgtcatccataatttactacccaaatacttctccagat 205  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24480603 agacataaagttttataatagcataattacaatttcgagaatgctgctataaaccaaaagcacgtcattcataatttactacccaaatacttctccagat 24480702  T
Q  206 ccacatacaatgacattattcatgagagtagctattttagcagcaaaaatttgttttcaaacatgatacttgcttatcacctacaaaacaaatgtgattg 305  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  24480703 ccacatacaatgacattattcatgagagttgctattttagcagcaaaaat--------aaacatgatacttgcttatcacctacaaaacaaatgtgattg 24480794  T
Q  306 ttttgtccagaattgagggttgatgatcgtgcctttatccctcactgtccatgtacctatacccttgtttttcattatgtgcatcaacacaattagaatt 405  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || ||||||||    
T  24480795 ttttgtcaagaattgagggttgatgatcgtgcctttatccctcactgtccatgtacctatgcccttgtttttcattatgtgcgtcaacccacttagaatt 24480894  T
Q  406 tcttataaaccgtcatatcttagaaattcttaagtcttagagtgggatctgtg 458  Q
    ||||||||||| |||||||||||||||||||||||||||||||  ||||||||    
T  24480895 tcttataaaccatcatatcttagaaattcttaagtcttagagtctgatctgtg 24480947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 105 - 448
Target Start/End: Original strand, 24470533 - 24470878
Alignment:
Q  105 aagacataaagttttataatagcataattacaatttcgggaatgctgctataaaccaaaagcacgtcatccataatttactacccaaatacttctccaga 204  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24470533 aagacataaagtcttataatagcataattacaatttcgagaatgctgctataaaccaaaagcacgtcattcataatttactacccaaatacttctccaga 24470632  T
Q  205 tccacatacaatgacat---tattcatgagagtagctattttagcagcaaaaatttgttttcaaacatgatacttgcttatcacctacaaaacaaatgtg 301  Q
     ||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||     
T  24470633 cccacatacaatgacatctttattcatgacagtagctattttagcagcaaaaatttgttatcaaacatggtacttgcttatcacctacaaaacaaatgtc 24470732  T
Q  302 attgttttgtccagaattgagggttgatgatcgtgcctttatccctcactgtccatgtacctatacccttgtttttcattatgtgcatcaacacaattag 401  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| |||||||||||||| ||||    
T  24470733 attgttttgtcgagaattgagggttgatgatcgtgcctttatccctcactgtccatgtacctatgcccctgttttt-attctgtgcatcaacacacttag 24470831  T
Q  402 aatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  24470832 aatttcttataaaccgtcatatcttagaaattcataagtcttagagt 24470878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 24470277 - 24470357
Alignment:
Q  8 ctaattttaaaatatatgctaacctcccatacactcttatcaaataatcatacattccttcttagttattactgttacttt 88  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||||| || ||||||||||||| ||| ||| ||||||||    
T  24470277 ctaattttaaaatatatactaacctcccctacactcatatcaaataaacagacattccttcttacttaataccgttacttt 24470357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 31720051 - 31720095
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaagtct 442  Q
    |||||||||||||||||   |||||||||||||||||||||||||    
T  31720051 ttagaatttcttataaattttcatatcttagaaattcttaagtct 31720095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 448
Target Start/End: Complemental strand, 14758075 - 14758010
Alignment:
Q  383 tgtgcatcaacacaattagaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    |||||||||| ||| |||||||||||||| ||   | |||||||| |||||||| |||||||||||    
T  14758075 tgtgcatcaaaacacttagaatttcttatcaatttttatatcttataaattctttagtcttagagt 14758010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 383 - 448
Target Start/End: Complemental strand, 17687707 - 17687642
Alignment:
Q  383 tgtgcatcaacacaattagaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    |||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  17687707 tgtgcatcaaaacacttagaatttcttataaactttcatatcttagaaattcttaagtcttagagt 17687642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 448
Target Start/End: Complemental strand, 24635040 - 24634979
Alignment:
Q  387 catcaacacaattagaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    |||||| ||| ||| ||||||||||||||  |||||||||||||||||||||||||||||||    
T  24635040 catcaaaacacttataatttcttataaactttcatatcttagaaattcttaagtcttagagt 24634979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 439
Target Start/End: Complemental strand, 15598465 - 15598424
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaag 439  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  15598465 ttagaatttcttataaactttcatatcttagaaattcttaag 15598424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 444
Target Start/End: Original strand, 1210180 - 1210226
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaagtctta 444  Q
    ||||||||||||||||||  |||||| ||||||||||| ||||||||    
T  1210180 ttagaatttcttataaactttcatatattagaaattctaaagtctta 1210226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 448
Target Start/End: Complemental strand, 17879346 - 17879296
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    ||||||||||||||||||  ||| | ||||||||||| |||||||||||||    
T  17879346 ttagaatttcttataaactttcacaccttagaaattcataagtcttagagt 17879296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 19903342 - 19903294
Alignment:
Q  400 agaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  19903342 agaatttcttataaactttcatatcttagaaattcttaagtcttagagt 19903294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 444
Target Start/End: Original strand, 13545949 - 13545991
Alignment:
Q  402 aatttcttataaaccgtcatatcttagaaattcttaagtctta 444  Q
    |||||||||| |||| ||||||||||||||||||| |||||||    
T  13545949 aatttcttatcaaccttcatatcttagaaattcttgagtctta 13545991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 6037816 - 6037768
Alignment:
Q  400 agaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    ||||||||||||||||  |||||| ||| |||||| |||||||||||||    
T  6037816 agaatttcttataaactttcatatgttaaaaattcataagtcttagagt 6037768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 448
Target Start/End: Complemental strand, 10153752 - 10153702
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  10153752 ttagaatttcttataaactttcatatcttagaaattctttagtcttagagt 10153702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 448
Target Start/End: Complemental strand, 25399103 - 25399038
Alignment:
Q  383 tgtgcatcaacacaattagaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    |||||||||| | | ||| ||||||||||||||  |||||||||||||||||||||||| ||||||    
T  25399103 tgtgcatcaaaatacttaaaatttcttataaactttcatatcttagaaattcttaagtcatagagt 25399038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 23917547 - 23917503
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaagtct 442  Q
    ||||||||||||||||||  |||||||||||||||||||||||||    
T  23917547 ttagaatttcttataaactatcatatcttagaaattcttaagtct 23917503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 448
Target Start/End: Complemental strand, 11105121 - 11105075
Alignment:
Q  402 aatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    ||||||||||||||  |||||||||||||||||||||||| ||||||    
T  11105121 aatttcttataaactttcatatcttagaaattcttaagtcctagagt 11105075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 442
Target Start/End: Original strand, 14968977 - 14969017
Alignment:
Q  402 aatttcttataaaccgtcatatcttagaaattcttaagtct 442  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  14968977 aatttcttataaactttcatatcttagaaattcttaagtct 14969017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 444
Target Start/End: Original strand, 2819657 - 2819717
Alignment:
Q  383 tgtgcatcaacacaattagaatttcttataaaccgtcatatcttagaaattcttaagtctta 444  Q
    |||||||||| ||| |||||||||||||  |||  |||||||||||||||||| ||||||||    
T  2819657 tgtgcatcaa-acacttagaatttcttaacaactttcatatcttagaaattctaaagtctta 2819717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Original strand, 21684424 - 21684461
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattct 435  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  21684424 ttagaatttcttataaactttcatatcttagaaattct 21684461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 23486351 - 23486311
Alignment:
Q  402 aatttcttataaaccgtcatatcttagaaattcttaagtct 442  Q
    ||||||||||||||  |||||||||||||||||| ||||||    
T  23486351 aatttcttataaactttcatatcttagaaattctgaagtct 23486311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 448
Target Start/End: Original strand, 1878687 - 1878752
Alignment:
Q  383 tgtgcatcaacacaattagaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    |||||||||| ||| |||| ||||||||| |||  |||||||||| ||||||||||||||||||||    
T  1878687 tgtgcatcaaaacacttagcatttcttatcaactttcatatcttaaaaattcttaagtcttagagt 1878752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 440
Target Start/End: Complemental strand, 9762400 - 9762358
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaagt 440  Q
    ||||||||||||||||||  ||| |||||||||||||||||||    
T  9762400 ttagaatttcttataaactttcaaatcttagaaattcttaagt 9762358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 440
Target Start/End: Original strand, 10254770 - 10254808
Alignment:
Q  402 aatttcttataaaccgtcatatcttagaaattcttaagt 440  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  10254770 aatttcttataaactttcatatcttagaaattcttaagt 10254808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 448
Target Start/End: Original strand, 12598351 - 12598397
Alignment:
Q  402 aatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    |||||||||| |||| ||| ||||||||||||| |||||||||||||    
T  12598351 aatttcttatcaaccttcacatcttagaaattcataagtcttagagt 12598397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 444
Target Start/End: Original strand, 18362009 - 18362055
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaagtctta 444  Q
    ||||||||||||||||||  ||||||||||||||||||  |||||||    
T  18362009 ttagaatttcttataaactttcatatcttagaaattctagagtctta 18362055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 448
Target Start/End: Original strand, 12222864 - 12222927
Alignment:
Q  383 tgtgcatcaacacaattagaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    |||||||||| ||| |||||||| ||||| |||  ||||||||||| |||||||||||||||||||    
T  12222864 tgtgcatcaa-acacttagaatt-cttattaactttcatatcttagtaattcttaagtcttagagt 12222927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 15467635 - 15467586
Alignment:
Q  395 caattagaatttcttataaaccgtcatatcttagaaattcttaagtctta 444  Q
    ||||||||||||||||| |||  ||||||||||||||||||  |||||||    
T  15467635 caattagaatttcttatcaactttcatatcttagaaattctagagtctta 15467586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 444
Target Start/End: Original strand, 15871508 - 15871568
Alignment:
Q  383 tgtgcatcaacacaattagaatttcttataaaccgtcatatcttagaaattcttaagtctta 444  Q
    ||||||||| |||| ||||||||||||||||||  ||||||| || ||||| ||||||||||    
T  15871508 tgtgcatca-cacacttagaatttcttataaactttcatatcctataaatttttaagtctta 15871568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 448
Target Start/End: Complemental strand, 23087418 - 23087353
Alignment:
Q  383 tgtgcatcaacacaattagaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    |||||||||| ||| ||||||| ||||| ||||  ||||| |||||||||||||||||||||||||    
T  23087418 tgtgcatcaaaacacttagaatatcttacaaactttcataccttagaaattcttaagtcttagagt 23087353  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 449
Target Start/End: Original strand, 32491215 - 32491280
Alignment:
Q  383 tgtgcatcaacacaattagaatttcttataaaccgtcatatcttagaaattcttaagtcttagagtg 449  Q
    |||||||||| ||| ||||||||||||| ||||  ||||||||||||| |||||||||| |||||||    
T  32491215 tgtgcatcaa-acacttagaatttcttacaaactttcatatcttagaatttcttaagtcatagagtg 32491280  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 24619362 - 24619321
Alignment:
Q  399 tagaatttcttataaaccgtcatatcttagaaattcttaagt 440  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  24619362 tagaatttcttataaactttcatatcttagaaattcttaagt 24619321  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 13693513 - 13693476
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattct 435  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  13693513 ttagaatttcttataaactttcatatcttagaaattct 13693476  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 448
Target Start/End: Complemental strand, 8860385 - 8860341
Alignment:
Q  404 tttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    ||||||||||||  |||||||||||||||||||| |||| |||||    
T  8860385 tttcttataaactttcatatcttagaaattcttatgtctcagagt 8860341  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 442
Target Start/End: Original strand, 32468922 - 32468962
Alignment:
Q  402 aatttcttataaaccgtcatatcttagaaattcttaagtct 442  Q
    ||||||||||||||  |||||||||| ||||||||||||||    
T  32468922 aatttcttataaactttcatatcttataaattcttaagtct 32468962  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 448
Target Start/End: Complemental strand, 27939714 - 27939649
Alignment:
Q  383 tgtgcatcaacacaattagaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    |||||| ||| ||| ||| ||||||||||||||  ||||||||||||||||||||||| |||||||    
T  27939714 tgtgcaacaaaacacttataatttcttataaactttcatatcttagaaattcttaagtattagagt 27939649  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 26704349 - 26704301
Alignment:
Q  400 agaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||||    
T  26704349 agaatttcttataaactttcatatcttagaaattcgtaagtcttagagt 26704301  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 448
Target Start/End: Original strand, 25564316 - 25564363
Alignment:
Q  401 gaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    |||||||||| ||||  ||||||| |||||||||||||||||||||||    
T  25564316 gaatttcttacaaactttcatatcatagaaattcttaagtcttagagt 25564363  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 440
Target Start/End: Original strand, 40202777 - 40202819
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaagt 440  Q
    ||||||||||||||||||  |||||||||| ||||||||||||    
T  40202777 ttagaatttcttataaactttcatatcttaaaaattcttaagt 40202819  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 24109791 - 24109839
Alignment:
Q  400 agaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    |||||| |||||||||  | ||||||||||||||||||||||| |||||    
T  24109791 agaattccttataaacttttatatcttagaaattcttaagtctcagagt 24109839  T

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Target: scaffold0340 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 17680 - 17636
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaagtct 442  Q
    ||||||||||||||||||  |||||||||||||||||||||||||    
T  17680 ttagaatttcttataaactttcatatcttagaaattcttaagtct 17636  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 448
Target Start/End: Complemental strand, 1464006 - 1463956
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    |||||||||||||| |||  |||||||||| ||||||||||||||||||||    
T  1464006 ttagaatttcttatcaactttcatatcttacaaattcttaagtcttagagt 1463956  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 448
Target Start/End: Original strand, 17769432 - 17769482
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    ||||||||||||||||||  ||||||||||||||| ||||| |||||||||    
T  17769432 ttagaatttcttataaactttcatatcttagaaatgcttaactcttagagt 17769482  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 448
Target Start/End: Original strand, 19070733 - 19070783
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    ||||||||||||||||||  ||||||||||||||| ||||| |||||||||    
T  19070733 ttagaatttcttataaactttcatatcttagaaatgcttaactcttagagt 19070783  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 448
Target Start/End: Original strand, 19658414 - 19658464
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    |||||||||||||| |||  |||||||||||||||| ||||||||||||||    
T  19658414 ttagaatttcttatcaactttcatatcttagaaattattaagtcttagagt 19658464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 54480547 - 54480620
Alignment:
Q  105 aagacataaagttttataatagcataattacaatttcgggaatgctgctataaaccaaaagcacgtcatccata 178  Q
    |||||||||  |||| ||| ||||| ||| |||||| | |||||||||||||||||||||||| ||||| ||||    
T  54480547 aagacataactttttgtaaaagcatgatttcaattttgagaatgctgctataaaccaaaagcatgtcattcata 54480620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 444
Target Start/End: Original strand, 16305587 - 16305633
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaagtctta 444  Q
    ||||||||||||||||||  ||||||||||||||||||  |||||||    
T  16305587 ttagaatttcttataaactttcatatcttagaaattctagagtctta 16305633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 439
Target Start/End: Original strand, 7921141 - 7921182
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaag 439  Q
    ||||||||||||||||||  ||||||||||||||||| ||||    
T  7921141 ttagaatttcttataaactttcatatcttagaaattcataag 7921182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 18122054 - 18122099
Alignment:
Q  399 tagaatttcttataaaccgtcatatcttagaaattcttaagtctta 444  Q
    ||||||||||||| |||  |||||||||||||||||| ||||||||    
T  18122054 tagaatttcttatcaactttcatatcttagaaattctaaagtctta 18122099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 444
Target Start/End: Complemental strand, 2702 - 2656
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaagtctta 444  Q
    |||||||||||||| |||  |||||||||||||||||| ||||||||    
T  2702 ttagaatttcttatcaactttcatatcttagaaattctaaagtctta 2656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 444
Target Start/End: Original strand, 2216 - 2262
Alignment:
Q  398 ttagaatttcttataaaccgtcatatcttagaaattcttaagtctta 444  Q
    ||||||||||||||||||  ||||||||||||||||||  |||||||    
T  2216 ttagaatttcttataaactttcatatcttagaaattctagagtctta 2262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 135879 - 135831
Alignment:
Q  400 agaatttcttataaaccgtcatatcttagaaattcttaagtcttagagt 448  Q
    |||| |||||||||||  |||||||||| |||||| |||||||||||||    
T  135879 agaaattcttataaactttcatatcttataaattcgtaagtcttagagt 135831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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