View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290-Insertion-9 (Length: 458)
Name: NF5290-Insertion-9
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290-Insertion-9 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 2161157 - 2160791
Alignment:
| Q |
8 |
aaaagaataacaaacaagttagatcagccttgtctaaggtatttcttgaaacattataaagtgcaagtttgtgaaggagattccaagattccctcgtttg |
107 |
Q |
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| T |
2161157 |
aaaagaataacaaacaagttagatcagccttgtctaaggtatttcttgaaacattatcaagtgcaagtttgtgaaggagattccaagattcactcgtttg |
2161058 |
T |
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| Q |
108 |
tgcagcatcagggaaacgatagaaacatgtaaagtgtcatccaggtcaataaaatttgatgagtgccattgtagcgaccattcaaaacccaccaattctt |
207 |
Q |
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| T |
2161057 |
tgcagcatcagggaaacgatagaaacatgtaaagtgtcatccaggtcaataaaatttgatgagtgccattgtagcgaccattcaaaacccaccgattctt |
2160958 |
T |
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| Q |
208 |
ctcattctgtcaagtgcaaatgctgcatcgaatccgaatcccaaactcaaccttatctcctcaattttgctggcatataccaaagtctcacacacaaaaa |
307 |
Q |
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| T |
2160957 |
ctcattctgtcaagtgcaaatgctgcatcgaatccgaatcccaaactcaaccttatctcctcaattttgctggcatataccaaagtctcacacacaaaaa |
2160858 |
T |
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| Q |
308 |
tactcccagttggtacgtccaaatgaggtcttgggctacccacccaaatccggaagctccagctggaaaaa |
378 |
Q |
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| T |
2160857 |
tactcccagttggtacgtccaaatgaggtcttgggtt----acccaaatccggaagctccagctggaaaaa |
2160791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 373 - 458
Target Start/End: Complemental strand, 2160748 - 2160663
Alignment:
| Q |
373 |
gaaaaatactcaccattctgattttgtaatgccctcaatgaatttcttatgttgctatatgggttaggtgtctctcattattgtgc |
458 |
Q |
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| T |
2160748 |
gaaaaatactcaccattctggttttgtaatgccctcaatgaatttcttatgttgctatatgggttaggtgtctatcattattgtgc |
2160663 |
T |
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