View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_high_10 (Length: 552)
Name: NF5290_high_10
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 24 - 542
Target Start/End: Complemental strand, 30952569 - 30952035
Alignment:
| Q |
24 |
ggcatacagggctgcatataaaacaccagttggaatatctccatacagaatggtatatggaaaatcttgtcatatagcaactgaattacaacacaaagcc |
123 |
Q |
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| T |
30952569 |
ggcatatagggctgcatacaaaacaccacttggaatatctccatatagaatggtatatggcaaagcttgtcatataccaactgaatcacaacacaaagcc |
30952470 |
T |
|
| Q |
124 |
ttgttggctttaaagaaacttaaatgggagtcgcaaaat-----------------gctgtaactccatgaattagaagaaaatagtcttattacttatg |
206 |
Q |
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| T |
30952469 |
ttgttggctctaaagaaacttaacttggacttgcaaaatactaggagtctcgaaatgctgcaactccataaattagaagaaaatagtcttattacttat- |
30952371 |
T |
|
| Q |
207 |
aaaatgcagaagtttacaagtccaaggttaagaaatggcatgatgccaagattcgaaaaaaggaattccaagtgggggagaaagtcttactttgtaactc |
306 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30952370 |
aaaatttagaagtttacaagtccaaggttaggaaatggcatgatgccaagattcgaaaaaaggaattccaagtgggggagaaagtcttactctgtaactc |
30952271 |
T |
|
| Q |
307 |
caaactaaaactatttcctaaaaaattaaattcaagatggtttagaccttttgtgatttctcaagtcttccccaatggaacaattacattgaaagaggat |
406 |
Q |
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| T |
30952270 |
caaactaaacctatttcctaaaaaattaaattcaagatggtttagaccttttgtgatttctcaagtcttcccctatggaacaattacattgaaagaggat |
30952171 |
T |
|
| Q |
407 |
tatgtacgtaaattcaaggtgaacgccagagagtcaagcactacttgattctggataacataaccaacaatagaaggtcgataaattttggagaagcttc |
506 |
Q |
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| T |
30952170 |
tatgtatggaaattcaaggtgaacgccagagagtcaagcactacttgattctggataacataaccaacaatagaaggtcgataaattttggagaagcttc |
30952071 |
T |
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| Q |
507 |
aacaaacttggaatcaacctccctagccctcctatg |
542 |
Q |
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| T |
30952070 |
aacaaacttggaatcaacctccctagccctcctatg |
30952035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 148 - 491
Target Start/End: Complemental strand, 30946523 - 30946189
Alignment:
| Q |
148 |
tgggagtcgcaaaatgctgtaactccatgaattagaagaaaatagtcttattacttatgaaaatgcagaagtttacaagtccaaggttaagaaatggcat |
247 |
Q |
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| T |
30946523 |
tgggagtcgcaaaatgctgcaactccatgaattagaagaaaatagtcttattacttatgaaaatgcagaagtt-acaagtccaaggttaataaatggcat |
30946425 |
T |
|
| Q |
248 |
gatgccaagattcgaaaaaaggaattccaagtgggggagaaagtcttactttgtaactccaaactaaaactatttcctaaaaaattaaattcaagatggt |
347 |
Q |
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| T |
30946424 |
gatgccaatattcaaaaaaaggaattccaagtaggggagaaagtcttactctgtaactccaaactaaagctatttcctagaaaattaaattcaagatggt |
30946325 |
T |
|
| Q |
348 |
ttagaccttttgtgatttctcaagtcttccccaatggaacaattacattgaaagaggattatgtacgtaaattcaaggtgaacgccagagagtcaagcac |
447 |
Q |
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| T |
30946324 |
ttagacc--------tttcttaagtcttctccaatggaacaattacattgacagaggattatgtatggaaattcaagttgaacgccaaagagtcaagcac |
30946233 |
T |
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| Q |
448 |
tacttgattctggataacataaccaacaatagaaggtcgataaa |
491 |
Q |
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| T |
30946232 |
tacttgattctggataacataactaacaatagaaggtcgataaa |
30946189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 30946584 - 30946542
Alignment:
| Q |
104 |
ctgaattacaacacaaagccttgttggctttaaagaaacttaa |
146 |
Q |
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| T |
30946584 |
ctgaattacaacaaaaacccttgttggcttgaaagaaacttaa |
30946542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 13208388 - 13208261
Alignment:
| Q |
168 |
aactccatgaattagaagaaaatagtcttattacttatgaaaatgcagaagtttacaagtccaaggttaagaaatggcatgatg-ccaagattcgaaaaa |
266 |
Q |
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|||||||||| |||||||| |||| ||||||||||| || |||||| || |||| |||||||| ||||||||||| ||||||| ||||||| |||| |
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| T |
13208388 |
aactccatgagttagaagagcatagacttattacttaggagaatgcacaaatttaaaagtccaaagttaagaaatgacatgatgttaaagattcagaaaa |
13208289 |
T |
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| Q |
267 |
aggaattccaagtgggggagaaagtctta |
295 |
Q |
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| T |
13208288 |
gagaattccaagt-ggggagaaagtctta |
13208261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 17059500 - 17059535
Alignment:
| Q |
219 |
tttacaagtccaaggttaagaaatggcatgatgcca |
254 |
Q |
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| T |
17059500 |
tttacaagtccaaggttaagaagtggcatgatgcca |
17059535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 542
Target Start/End: Original strand, 26280191 - 26280268
Alignment:
| Q |
465 |
cataaccaacaatagaaggtcgataaattttggagaagcttcaacaaacttggaatcaacctccctagccctcctatg |
542 |
Q |
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|||||| ||||| ||||||| ||| ||| ||| |||| |||| ||| |||||||||| |||||||||||||||||| |
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| T |
26280191 |
cataactaacaagagaaggttgatgaatgttgacaaagcatcaaaaaatttggaatcaagctccctagccctcctatg |
26280268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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