View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5290_high_17 (Length: 473)

Name: NF5290_high_17
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5290_high_17
NF5290_high_17
[»] chr3 (11 HSPs)
chr3 (18-471)||(38027076-38027530)
chr3 (21-471)||(38031915-38032357)
chr3 (21-471)||(38038176-38038622)
chr3 (24-471)||(38041574-38042015)
chr3 (203-471)||(38034863-38035130)
chr3 (256-471)||(50906890-50907105)
chr3 (47-471)||(55082770-55083174)
chr3 (202-471)||(50913300-50913571)
chr3 (44-155)||(50907192-50907302)
chr3 (27-138)||(50912804-50912915)
chr3 (391-419)||(55084781-55084809)
[»] chr8 (1 HSPs)
chr8 (21-471)||(21607885-21608332)
[»] chr2 (1 HSPs)
chr2 (297-377)||(3072268-3072348)
[»] chr4 (11 HSPs)
chr4 (374-471)||(27424579-27424676)
chr4 (374-472)||(27421999-27422097)
chr4 (374-443)||(27411549-27411618)
chr4 (374-443)||(27567233-27567302)
chr4 (374-449)||(27419158-27419233)
chr4 (371-450)||(27523489-27523568)
chr4 (374-449)||(27571601-27571676)
chr4 (377-443)||(27526205-27526271)
chr4 (374-415)||(27479004-27479045)
chr4 (374-415)||(27486064-27486105)
chr4 (371-443)||(27476662-27476734)


Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 38027076 - 38027530
Alignment:
Q  18 tatatcttgtctgaaacatgtaaagaaggtctctttcacaaacctaatccttagtgaaaacctccaagacagtgccatgtgatcattaataagacatgtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38027076 tatatcttgtctgaaacatgtaaagaaggtctctttcacaaacctaatccttagtgaaaacctccaagacagtgccatgtgatcattaataagacatgtc 38027175  T
Q  118 tccaactaaaccaaattgaataactcattcgccataca-ttagtttcttaagagttaagtctatatatacccctcattggattctcaagcaacacaaata 216  Q
    ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38027176 tccaactaaactaaattgaataactcattcaccatacaattagtttcttaagagttaagtctatatatacccctcattggattttcaagcaacacaaata 38027275  T
Q  217 attcttaccttaaagcaatcagaactcaagtccactttcttctactacttctttgagatcattctgttgtgaagaaacaaaaacaagaatgggttttcgc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38027276 attcttaccttaaagcaatcagaactcaagtccactttcttctactacttctttgagatcattctgttgtgaagaaacaaaaacaagaatgggttttcgc 38027375  T
Q  317 ttacctgttattagaagatcatcacttagtgcaagtcaatcatctagcaaacaagtggaagttccaaaaggccatcttgcagtgtatgttggagagaaaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38027376 ttacctgttattagaagatcatcacttagtgcaagtcaatcatctagcaaacaagtggaagttccaaaaggccatcttgcagtgtatgttggagagaaaa 38027475  T
Q  417 tgagaaggtttatgattccagtatcatttttgaatgagcctttatttcaagaatt 471  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  38027476 tgagaaggtttatgattcccgtatcattcttgaatgagcctttatttcaagaatt 38027530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 21 - 471
Target Start/End: Original strand, 38031915 - 38032357
Alignment:
Q  21 atcttgtctgaaacatgtaaagaaggtctctttcacaaacctaatccttagtgaaaacctccaagacagtgccatgtgatcattaataagacatgtctcc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| |     
T  38031915 atcttgtctgaaacatgtaaagaaggtctctttcacaaacctaatcctcagtgaaaacctccaagacagtggcatgtgatcattaatgagacatgtccct 38032014  T
Q  121 aactaaaccaaattgaataactcattcgccataca-ttagtttcttaagagttaagtctatatatacccctcattggattctcaagcaacacaaataatt 219  Q
    |||||||||  |||||||||||||||| ||||||| || ||||||||||       |||||||||||||||| |||||||  ||||||||||||||||||    
T  38032015 aactaaaccccattgaataactcattcaccatacaattggtttcttaag-------tctatatatacccctctttggatttacaagcaacacaaataatt 38032107  T
Q  220 cttaccttaaagcaatcagaactcaagtccactttcttctactacttctttgagat--cattctgttgtgaagaaacaaaaacaagaatgggttttcgct 317  Q
    |||||||| ||||||||||||||||||| |||||     |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  38032108 cttaccttgaagcaatcagaactcaagttcactta----tactacttctttgagatttcattctgttgtgaagaaacaaaaacaagaatgggttttcgct 38032203  T
Q  318 tacctgttattagaagatcatcacttagtgcaagtcaatcatctagcaaacaagtggaagttccaaaaggccatcttgcagtgtatgttggagagaaaat 417  Q
    |||||| ||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38032204 tacctggtattagacgatcatcatttagtgcaagtcaatcatctatcaaacaagtggaagttccaaaaggctatcttgcagtgtatgttggagagaaaat 38032303  T
Q  418 gagaaggtttatgattccagtatcatttttgaatgagcctttatttcaagaatt 471  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38032304 gagaaggtttatgattccagtatcattcttgaatgagcctttatttcaagaatt 38032357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 471
Target Start/End: Original strand, 38038176 - 38038622
Alignment:
Q  21 atcttgtctgaaacatgtaaagaaggtctctttcacaaacctaatccttagtgaaaacctccaagacagtg--ccatgtgatcattaataagacatgtct 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||  |||||||||||||||| || |||||||    
T  38038176 atcttgtctgaaacatgtaaagaaggtctctttcacaagcctaatcctaagtgaaaacctccaagacagtgttccatgtgatcattaatgagccatgtct 38038275  T
Q  119 ccaactaaaccaaattgaataactcattcgccatacattagtttcttaagagttaagtctatatatacccctcattggattctcaagcaacacaaataat 218  Q
    ||||||||||| | ||||| | ||| ||| ||||||| | | ||   ||      |||||||||||||||  |||||| ||   ||||||||||||| ||    
T  38038276 ccaactaaaccca-ttgaacagctccttcaccatacaatcggtttgcaa------agtctatatatacccaccattgggtttagaagcaacacaaatcat 38038368  T
Q  219 tcttaccttaaagcaatcagaactcaagtccactt---tcttctactacttctttgagatcattctgttgtgaagaaacaaaaacaagaatgggttttcg 315  Q
    |||||||   ||||| ||| || |||||| |||||   | ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  38038369 tcttaccccgaagca-tcataattcaagttcacttattttttctactacttctttgagatcattctgttgtgaagaagcaaaaa-aagaatgggttttcg 38038466  T
Q  316 cttacctgttattagaagatcatcacttagtgcaagtcaatcatctagcaaacaagtggaagttccaaaaggccatcttgcagtgtatgttggagagaaa 415  Q
    |||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38038467 cttacctggtattagacgatcatcatttagtgcaagtcaatcatctagcaaacaagtggaagtcccaaaaggccatcttgcagtgtatgttggagagaaa 38038566  T
Q  416 atgagaaggtttatgattccagtatcatttttgaatgagcctttatttcaagaatt 471  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||    
T  38038567 atgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaatt 38038622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 24 - 471
Target Start/End: Original strand, 38041574 - 38042015
Alignment:
Q  24 ttgtctgaaacatgtaaagaaggtctctttcacaaacctaatccttagtgaaaacctccaagacagtgccatgtgatcattaataagacatgtctccaac 123  Q
    ||||||||||||||| ||  | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |  |||||||||| |    
T  38041574 ttgtctgaaacatgtgaaacaagtctctttcacaagcctaatccttagtgaaaacctccaagacagtgccatgtgatcattattgaaccatgtctccagc 38041673  T
Q  124 taaaccaaattgaataactcattcgccataca-ttagtttcttaagagttaagtctatatatacccctcattggattctcaagcaacacaaataattctt 222  Q
    |||||| | | ||| | ||||||| ||||||| || ||||       |   ||||||||||||| | ||||||| ||  |||||||||||||| ||||||    
T  38041674 taaaccca-tcgaacacctcattcaccatacaattggttt-------gcacagtctatatatactcatcattgggtttacaagcaacacaaatcattctt 38041765  T
Q  223 accttaaagcaatcagaactcaagtccactt---tcttctactacttctttgagatcattctgttgtgaagaaacaaaaacaagaatgggttttcgctta 319  Q
    |||| |||||| ||| |||||||||  ||||   | |||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  38041766 acctcaaagca-tcataactcaagttaacttattttttctactacttcgttgagatcattcagtcgtgaagaaacaaaa-caagaatgggttttcgctta 38041863  T
Q  320 cctgttattagaagatcatcacttagtgcaagtcaatcatctagcaaacaagtggaagttccaaaaggccatcttgcagtgtatgttggagagaaaatga 419  Q
    |||| ||||||| |||||||| ||| |||| |||| ||||| ||||||||| ||||||| ||||||||| || | || ||||||||||||||| ||||||    
T  38041864 cctggtattagacgatcatcatttactgcaggtcagtcatccagcaaacaaatggaagtcccaaaaggctatttagcggtgtatgttggagaggaaatga 38041963  T
Q  420 gaaggtttatgattccagtatcatttttgaatgagcctttatttcaagaatt 471  Q
      |||||  ||||||||||| |||| |||||||||||||| |||||||||||    
T  38041964 agaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaatt 38042015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 203 - 471
Target Start/End: Original strand, 38034863 - 38035130
Alignment:
Q  203 aagcaacacaaataattcttaccttaaagcaatcagaactcaagtccactt-tcttctactacttctttgagatcattctgttgtgaagaaacaaaaaca 301  Q
    ||||||||||||| ||||||||||  ||||| ||| || |||||| ||||| | || | ||||| |||||||||||||||||| ||||||| ||||| ||    
T  38034863 aagcaacacaaatcattcttacctcgaagca-tcataattcaagttcacttatttttttctactactttgagatcattctgttctgaagaagcaaaa-ca 38034960  T
Q  302 agaatgggttttcgcttacctgttattagaagatcatcacttagtgcaagtcaatcatctagcaaacaagtggaagttccaaaaggccatcttgcagtgt 401  Q
    |||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  38034961 agaatgggttttcgtttacctgctattagacgatcatcatttagtgcaagtcaatcatctaacaaacaagtggaagtcccaaaaggccatcttgcggtgt 38035060  T
Q  402 atgttggagagaaaatgagaaggtttatgattccagtatcatttttgaatgagcctttatttcaagaatt 471  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||    
T  38035061 atgttggagagaaaatgcgaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaatt 38035130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 256 - 471
Target Start/End: Complemental strand, 50907105 - 50906890
Alignment:
Q  256 ttctactacttctttgagatcattctgttgtgaagaaacaaaaacaagaatgggttttcgcttacctgttattagaagatcatcacttagtgcaagtcaa 355  Q
    ||||||||||||||||||||||||| || || ||||||||||| |||||||||||||||||||||||| |||||||   |||||| ||||||||||||||    
T  50907105 ttctactacttctttgagatcattcagtcgtcaagaaacaaaa-caagaatgggttttcgcttacctggtattagacagtcatcatttagtgcaagtcaa 50907007  T
Q  356 tcatctagcaaacaagtggaagttccaaaaggccatcttgcagtgtatgtt-ggaga-gaaaatgagaaggtttatgattccagtatcatttttgaatga 453  Q
    || ||||||||||||||||| || ||||||||| || |||| ||||||||| ||||| ||||||||| |||||| |||||||||| ||||| ||||||||    
T  50907006 tcgtctagcaaacaagtggacgtcccaaaaggctattttgcggtgtatgttaggagaggaaaatgag-aggtttttgattccagtgtcattcttgaatga 50906908  T
Q  454 gcctttatttcaagaatt 471  Q
    ||||| ||||||||||||    
T  50906907 gccttcatttcaagaatt 50906890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 47 - 471
Target Start/End: Complemental strand, 55083174 - 55082770
Alignment:
Q  47 tctctttcacaaacctaatccttagtgaaaacctccaagacagtgccatgtgatcattaataagacatgtctccaactaaaccaaattgaataactcatt 146  Q
    |||||||||||| ||||||||| ||||| ||||||||| |||  ||||||||||||||| | ||  |||||||| ||||||||  ||||||||||||||     
T  55083174 tctctttcacaagcctaatcctcagtgagaacctccaaaacaaagccatgtgatcattagtgagtaatgtctcctactaaaccccattgaataactcatc 55083075  T
Q  147 cgccatacattagtttcttaagagttaagtctatatatacccctcattggattctcaagcaacacaaataattcttaccttaaagcaatcagaactcaag 246  Q
    | ||||||| | | || | || |||  |   ||||||||| | |||| |  ||   |||||||| |||| |||| |||||| ||||| |||||| |||||    
T  55083074 caccatacaattggttttcaa-agtcta---tatatatactcatcatcgagtttagaagcaacaaaaatcattcataccttgaagca-tcagaattcaag 55082980  T
Q  247 tccactt---tcttctactacttctttgagatcattctgttgtgaagaaacaaaaacaagaatgggttttcgcttacctgttattagaagatcatcactt 343  Q
      || ||   | |||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |||||||||||||||| ||    
T  55082979 ctcatttctgttttctaccacttctttgagatcattctgttgtgaagaaataaaa-caagaatgggtttccgcttacctggtattagaagatcatcattt 55082881  T
Q  344 agtgcaagtcaatcatctagcaaacaagtggaagttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcat 443  Q
    ||||||||||||||||||| |||||||||                 || |||| || |||||||||||||||||||  |||||  |||||||||||||||    
T  55082880 agtgcaagtcaatcatctatcaaacaagt-----------------atattgctgtttatgttggagagaaaatgaagaggttcctgattccagtatcat 55082798  T
Q  444 ttttgaatgagcctttatttcaagaatt 471  Q
    ||||||||||||||||||||||||||||    
T  55082797 ttttgaatgagcctttatttcaagaatt 55082770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 202 - 471
Target Start/End: Original strand, 50913300 - 50913571
Alignment:
Q  202 caagcaacacaaataattcttaccttaaagcaatcagaactcaagtccactttcttctactacttctttgagatcattctgttgtgaagaaacaaaaaca 301  Q
    |||||||||||||| ||||||||||| ||||  ||| || |||| | | | |  |||| ||||| ||||| ||||||||||| ||||||||| |||||      
T  50913300 caagcaacacaaatcattcttaccttgaagc--tcataattcaaattcgcatatttcttctactactttgtgatcattctgtcgtgaagaaaaaaaaa-- 50913395  T
Q  302 agaatgggttttcgctt------acctgttattagaagatcatcacttagtgcaagtcaatcatctagcaaacaagtggaagttccaaaaggccatcttg 395  Q
    | || ||| |||| |||      ||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||| ||||||    
T  50913396 acaacggggtttcactttcacctacctggtattagaagatcatcatttagtgcaagtcaatcatctagcaaagaagtggaagtcccaaaaggctatcttg 50913495  T
Q  396 cagtgtatgttggagagaaaatgagaaggtttatgattccagtatcatttttgaatgagcctttatttcaagaatt 471  Q
    ||||||||||||||||||||||||  |||||  |||||||| ||||||| ||||||||||||||||||||||||||    
T  50913496 cagtgtatgttggagagaaaatgaagaggttcttgattccaatatcattcttgaatgagcctttatttcaagaatt 50913571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 50907302 - 50907192
Alignment:
Q  44 aggtctctttcacaaacctaatccttagtgaaaacctccaagacagtgccatgtgatcattaataagacatgtctccaactaaaccaaattgaataactc 143  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||  |||||| |||||    
T  50907302 aggtctgtttcacaagcctaatcctaagtgaaaacctccaagacagtgccatgtgatcattaatgagccatgtctccaactaaacc-cattgaacaactc 50907204  T
Q  144 attcgccataca 155  Q
    |||| |||||||    
T  50907203 attcaccataca 50907192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 50912804 - 50912915
Alignment:
Q  27 tctgaaacatgtaaagaaggtctctttcacaaacctaatccttagtgaaaacctccaagacagtgccatgtgatcattaataagacatgtctccaactaa 126  Q
    ||||||| |||| ||| |||||||| ||||||  |||||||| | ||||||||||||||||||||| |||||||||||||| ||  |||||||||| |||    
T  50912804 tctgaaagatgtgaagcaggtctctgtcacaagtctaatcctcaatgaaaacctccaagacagtgctatgtgatcattaatgagctatgtctccaattaa 50912903  T
Q  127 accaaattgaat 138  Q
    |||  |||||||    
T  50912904 accccattgaat 50912915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 419
Target Start/End: Original strand, 55084781 - 55084809
Alignment:
Q  391 tcttgcagtgtatgttggagagaaaatga 419  Q
    |||||||||||||||||||||||||||||    
T  55084781 tcttgcagtgtatgttggagagaaaatga 55084809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 471
Target Start/End: Original strand, 21607885 - 21608332
Alignment:
Q  21 atcttgtctgaaacatgtaaagaaggtctctttcacaaacctaatccttagtgaaaacctccaagacagtg--ccatgtgatcattaataagacatgtct 118  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||  |||||||||||||||  || |||||||    
T  21607885 atcttgtctgaaacatgcaaagaaggtctctttcacaagcctaatcctaagtgaaaacctccaagacagtgtgccatgtgatcattaacgagccatgtct 21607984  T
Q  119 ccaactaaaccaaattgaataactcattcgccatacattagtttcttaagagttaagtctatatatacccctcattggattctcaagcaacacaaataat 218  Q
    ||||||||||| | ||||| | ||| ||| ||||||| | | ||  |||      |||||||||||||||  |||||| ||   |||||| |||||| ||    
T  21607985 ccaactaaaccca-ttgaacagctccttcaccatacaatcggtttgtaa------agtctatatatacccaccattgggtttagaagcaaaacaaatcat 21608077  T
Q  219 tcttaccttaaagcaatcagaactcaagtccactt---tcttctactacttctttgagatcattctgttgtgaagaaacaaaaacaagaatgggttttcg 315  Q
    ||||||||  ||||| ||| || |||||| |||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21608078 tcttacctcgaagca-tcataattcaagttcacttattttttctactacttctttgagatcattctgttgtgaagaaacaaaaacaagaatgggttttcg 21608176  T
Q  316 cttacctgttattagaagatcatcacttagtgcaagtcaatcatctagcaaacaagtggaagttccaaaaggccatcttgcagtgtatgttggagagaaa 415  Q
    |||||||| ||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21608177 cttacctggtattagacgatcatcatttagtgcaagtcaatcatctatcaaacaagtggaagttccaaaaggctatcttgcagtgtatgttggagagaaa 21608276  T
Q  416 atgagaaggtttatgattccagtatcatttttgaatgagcctttatttcaagaatt 471  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||    
T  21608277 atgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaatt 21608332  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 3072268 - 3072348
Alignment:
Q  297 aaacaagaatgggttttcgcttacctgttattagaagatcatcacttagtgcaagtcaatcatctagcaaacaagtggaag 377  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| |||||    
T  3072268 aaacaagaatgggttttcgcttacctggtattagacgatcatcatttagtgcaagtcaatcatctagcaaacaagaggaag 3072348  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 471
Target Start/End: Complemental strand, 27424676 - 27424579
Alignment:
Q  374 gaagttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcatttttgaatgagcctttatttcaagaatt 471  Q
    ||||| ||||||||| |||| ||||| |||||||||||  |||||||  ||||| |||||||||||||||  |||||  | |||| ||||||||||||    
T  27424676 gaagtcccaaaaggctatctcgcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaatt 27424579  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 472
Target Start/End: Complemental strand, 27422097 - 27421999
Alignment:
Q  374 gaagttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcatttttgaatgagcctttatttcaagaatta 472  Q
    ||||| ||||||||| |||| ||||| ||||||||||| | ||||| | ||||  |||||||||||||||  |||||  | || |||||||||||||||    
T  27422097 gaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaaacggttcgtgattccagtatcatacttgaaccaaccattatttcaagaatta 27421999  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 443
Target Start/End: Complemental strand, 27411618 - 27411549
Alignment:
Q  374 gaagttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcat 443  Q
    ||||| ||||||||| |||| ||||| ||||||||||| | ||||||| ||||  |||||||||||||||    
T  27411618 gaagtcccaaaaggctatctcgcagtctatgttggagatagaatgagacggttcgtgattccagtatcat 27411549  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 443
Target Start/End: Original strand, 27567233 - 27567302
Alignment:
Q  374 gaagttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcat 443  Q
    ||||| ||||||||| |||| ||||| ||||||||||| | ||||||| ||||  |||||||||||||||    
T  27567233 gaagtcccaaaaggctatctcgcagtctatgttggagatagaatgagacggttcgtgattccagtatcat 27567302  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 449
Target Start/End: Complemental strand, 27419233 - 27419158
Alignment:
Q  374 gaagttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcatttttga 449  Q
    ||||| ||||||||| |||| ||||| ||||||||||| | ||||||  ||||  ||||||||||||||| |||||    
T  27419233 gaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttga 27419158  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 450
Target Start/End: Complemental strand, 27523568 - 27523489
Alignment:
Q  371 gtggaagttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcatttttgaa 450  Q
    ||||| |||||||| ||| |||| |||||||| || |||||||||||||   ||||| ||||||| ||||||| ||||||    
T  27523568 gtggacgttccaaagggctatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaa 27523489  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 449
Target Start/End: Original strand, 27571601 - 27571676
Alignment:
Q  374 gaagttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcatttttga 449  Q
    ||||| ||||||||| |||| ||||| ||||||||||| | ||||||  ||||  ||||||||||||||| |||||    
T  27571601 gaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttga 27571676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 443
Target Start/End: Complemental strand, 27526271 - 27526205
Alignment:
Q  377 gttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcat 443  Q
    |||||||| ||  |||| |||||||||||||||||||||||||   ||||| ||||||| |||||||    
T  27526271 gttccaaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcat 27526205  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 27479045 - 27479004
Alignment:
Q  374 gaagttccaaaaggccatcttgcagtgtatgttggagagaaa 415  Q
    ||||||||||| ||| || |||||||||||||||||||||||    
T  27479045 gaagttccaaagggctatgttgcagtgtatgttggagagaaa 27479004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 27486105 - 27486064
Alignment:
Q  374 gaagttccaaaaggccatcttgcagtgtatgttggagagaaa 415  Q
    ||||||||||| ||| || |||||||||||||||||||||||    
T  27486105 gaagttccaaagggctatgttgcagtgtatgttggagagaaa 27486064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 443
Target Start/End: Original strand, 27476662 - 27476734
Alignment:
Q  371 gtggaagttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcat 443  Q
    ||||| |||||||| ||  |||| |||||||||||||| ||||||||||   ||||| ||||||| |||||||    
T  27476662 gtggacgttccaaagggatatctagcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcat 27476734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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