View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_high_2 (Length: 666)
Name: NF5290_high_2
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 308
Target Start/End: Complemental strand, 25992673 - 25992375
Alignment:
| Q |
10 |
gcaaaggcaaacaagaaacaaatatataaaaaagttcttgacgtcatctctaatttttaagtgatgatatatgagatacaagtgcttgatttgtattttt |
109 |
Q |
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| T |
25992673 |
gcaaaggcaaacaagaaacaaatatataaaaaagttcttgacgccatctctaatttttaagtgatgatatatgagatacaagtgcttgatttgtattttt |
25992574 |
T |
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| Q |
110 |
ataatgaaattttttggataaaattttacacaaatgacaccttgacaatgggaatgattaaaaaatgtttagatagaaatcggtcaaaagatgtttagaa |
209 |
Q |
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| T |
25992573 |
ataatgaaattttttggataaaatttcacacaaatgacaccttgacaatgtgaatgattaaaaaatgtttagatagaaatcggtcaaaagatgtttagaa |
25992474 |
T |
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| Q |
210 |
aggaaaaaattgattatttagaaatgaatatgtgaaaaaagaggaatatgtgtaatgggattaagcccccttagtgtttttctatgcttaaaccttatt |
308 |
Q |
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| T |
25992473 |
agaaaaaaattgattatttagatatgaatatgtgaaaaaagaggaatatgtgtaatgggattcagcccccttggtgtttttctatgcttaaaccttatt |
25992375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 25988565 - 25988282
Alignment:
| Q |
10 |
gcaaaggcaaacaagaaacaaatatataaaaaagttcttgacgtcatctctaatttttaagtgatgatatatgagatacaagtgcttgatttgtattttt |
109 |
Q |
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| T |
25988565 |
gcaaaggcaaacaagaaacaaatatataaaaaagttcttgacgccatctctaatttttaagtgatgatatatgagatacaagtgcttgatttgtattttt |
25988466 |
T |
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| Q |
110 |
ataatgaaattttttggataaaattttacacaaatgacaccttgacaatgggaatgattaaaaaatgtttagatagaaatcggtcaaaagatgtttagaa |
209 |
Q |
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| T |
25988465 |
ataatgaaattttttggataaaatttcacacaaatgacaccttgacaatgtgaatgattaaaaaatgtttagatagaaatcggtcaaaagatgtttagaa |
25988366 |
T |
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| Q |
210 |
aggaaaaaattgattatttagaaatgaatatgtgaa-----aaaagaggaatatgtgtaatgggattaagcccccttagtgttt |
288 |
Q |
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| T |
25988365 |
aggaaaaaattgattatttagaaatgaatatgtgaaaaattaaaagaggaatatgtgtaatgggattcaacccccttattgttt |
25988282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 431 - 649
Target Start/End: Complemental strand, 25991913 - 25991693
Alignment:
| Q |
431 |
aatttgtgctttttaaaaatgaatttgttaatgtgtannnnnnngt--ggtgtccgggatttgaatcggaccttaaatataatatgcattgtcctcacca |
528 |
Q |
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| T |
25991913 |
aatttgtgcttctttaaaatgaatttgttaatgtgtatttttttttatggtgtctgagattcgaatcgaaacttgcatatattatgtattgtcctcacca |
25991814 |
T |
|
| Q |
529 |
acttagctaaaaggaacttttaaggtgtataaatatatgcatacgccctaacttagtttacactttgttttaattagattagatgtcaaaaccaagttta |
628 |
Q |
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| T |
25991813 |
acttagctaaaggggacttttaaggtgtataaatatatgcatacgccctaacttagtttacactttgttttaattagattagatgtcaaaaccaagttta |
25991714 |
T |
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| Q |
629 |
gaatttttcttattgagcaat |
649 |
Q |
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|||||| |||||||| |||| |
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| T |
25991713 |
aaattttgcttattgaacaat |
25991693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 341 - 431
Target Start/End: Complemental strand, 25992342 - 25992252
Alignment:
| Q |
341 |
tgaatatttggacaacacgttagagagattaaaaggaataattattactgtttcaaatctagtaaatttttattatagcagatacttatca |
431 |
Q |
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| T |
25992342 |
tgaatatttggacaacacgttcgagagattaaaaggaataattattactgttttaaatcttgtaaatttttattatagcagatacttatca |
25992252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 569 - 649
Target Start/End: Complemental strand, 25986157 - 25986077
Alignment:
| Q |
569 |
atacgccctaacttagtttacactttgttttaattagattagatgtcaaaaccaagtttagaatttttcttattgagcaat |
649 |
Q |
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| T |
25986157 |
atacgccctagcttagtttacactttgttttaatgagattagatgtcaaaaccaagtttagaattttgcttattgagcaat |
25986077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 431 - 467
Target Start/End: Complemental strand, 25986208 - 25986172
Alignment:
| Q |
431 |
aatttgtgctttttaaaaatgaatttgttaatgtgta |
467 |
Q |
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| T |
25986208 |
aatttgtgcttatttaaaatgaatttgttaatgtgta |
25986172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 539
Target Start/End: Original strand, 2817384 - 2817429
Alignment:
| Q |
494 |
tcggaccttaaatataatatgcattgtcctcaccaacttagctaaa |
539 |
Q |
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| T |
2817384 |
tcggaccttacatatattatgcattgtccttaccaactgagctaaa |
2817429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 538
Target Start/End: Original strand, 42043077 - 42043121
Alignment:
| Q |
494 |
tcggaccttaaatataatatgcattgtcctcaccaacttagctaa |
538 |
Q |
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| T |
42043077 |
tcggaccttaaatatattatgcattgtccataccaactgagctaa |
42043121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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