View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_high_24 (Length: 379)
Name: NF5290_high_24
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 34985809 - 34986168
Alignment:
| Q |
1 |
tggctatcagaatttcaaaattaacataatgttacatccttttgtttatatttgcagatgagtgcagaatttcatttaccaagtcctgttataccaactc |
100 |
Q |
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| T |
34985809 |
tggctatcagaatttcaaaattaacataatgttacatccttttatttatatttgcagatgagtgcagaatttcatttaccaagtcctgttataccaactc |
34985908 |
T |
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| Q |
101 |
ggaagtgtgtttttgcaagatatagcaaacaattcactcataacatatgggctgttgttgatgtatctttggaggacattttacaatctccttcaaacaa |
200 |
Q |
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| T |
34985909 |
ggaagtgtgtttttgcaagatatagcaaacaattcactcataacatatgggctgttgttgatgtatctttggaggacattttacaatctccttctaacaa |
34986008 |
T |
|
| Q |
201 |
ttttcataagagaccttcaggctgtttgattgaaggaatgcccgatggaaactccaaggttcgatacatacatatactccttttagttttgattataaac |
300 |
Q |
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| T |
34986009 |
ttttcataaaagaccttctggctgtttgattgaaggaatgcccgatggaaactccaaggtttgatacatacatatactgcttttagttttgattataaac |
34986108 |
T |
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| Q |
301 |
aaaaactggagtataatagttcagttttgatgttttaattaccttaggttatatggttgg |
360 |
Q |
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| T |
34986109 |
aaaaaatggagtataatagttcagttttgatgttttaattaccttaggttatatggttgg |
34986168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 49 - 303
Target Start/End: Original strand, 34994221 - 34994475
Alignment:
| Q |
49 |
tatttgcagatgagtgcagaatttcatttaccaagtcctgttataccaactcggaagtgtgtttttgcaagatatagcaaacaattcactcataacatat |
148 |
Q |
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|||||||||||||||||||||||| |||| || |||||| |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
34994221 |
tatttgcagatgagtgcagaattttatttgcctagtccttttataccaactcgggagtgtgtgtttgcaagatatagcaaacaatttactcataacatat |
34994320 |
T |
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| Q |
149 |
gggctgttgttgatgtatctttggaggacattttacaatctccttcaaacaattttcataagagaccttcaggctgtttgattgaaggaatgcccgatgg |
248 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| |
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| T |
34994321 |
gggctgttgttgatgtatctttggaggacattttaccttctttctcaaacaattttcataaaagaccttcaggctgtttgattataggaatgcccaatgg |
34994420 |
T |
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| Q |
249 |
aaactccaaggttcgatacatacatatactccttttagttttgattataaacaaa |
303 |
Q |
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|||||||||||||| |||||||||||||||| |||| |||| |||||| |||| |
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| T |
34994421 |
aaactccaaggttctttacatacatatactccctttaattttctttataagcaaa |
34994475 |
T |
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