View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_high_27 (Length: 356)
Name: NF5290_high_27
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 15307663 - 15308007
Alignment:
| Q |
1 |
cgtatgggtttatgctattattctaactggttgcggagcttataaaaacgcacaacatgagactcaggatacttgcagaactgaccgtgctggactcata |
100 |
Q |
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| T |
15307663 |
cgtatgggtttatgctattattctaactggttgcggagcttataaaaacgcagaacatgagactcaggatacttgcagaactgaccgtgctggactcata |
15307762 |
T |
|
| Q |
101 |
catggtgcatcttggtaagagtcttgtgaatgtttattccgtactttaggtagtggtatattttagagaacacggtcgatgaaacttgttattttctata |
200 |
Q |
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| T |
15307763 |
catggtgcatcttggtaagagtcttgtgaatgtttattccgtactttaggtagtggtatattttagagaacacggtcgattaaacttgttattttctata |
15307862 |
T |
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| Q |
201 |
tctttaatgactagaaaaatggattcagttttggttaattcctaactatttattttgataaaatatattaaccaggattagcgctccaattcctttccgt |
300 |
Q |
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| T |
15307863 |
tctttaatgactagaaaaatggattcagttttggttaattcctaactatttattttgataaaatatattaaccaggattagccctccaattcctttccgt |
15307962 |
T |
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| Q |
301 |
tggggagctccaacatttgatgctggagaagctttcgcgatgatg |
345 |
Q |
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| T |
15307963 |
tggggagctccaacatttgatgctggagaagctttcgctatgatg |
15308007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 26473593 - 26473549
Alignment:
| Q |
301 |
tggggagctccaacatttgatgctggagaagctttcgcgatgatg |
345 |
Q |
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| T |
26473593 |
tggggagctccaacatttgatgctggcgaaacttttgctatgatg |
26473549 |
T |
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