View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5290_high_30 (Length: 344)
Name: NF5290_high_30
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_high_30 |
 | |
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| [»] scaffold0018 (2 HSPs) |
| | |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 24899865 - 24899533
Alignment:
| Q |
1 |
cttgcttgtacatctccataatcgtgttaatgctaaaattgcatgtcttctcaaagtttctacattcttcactaacaaacaaatcatgtgatatgacaaa |
100 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24899865 |
cttggttgtacatctccataatcatgttaatgctaaaattgtgtgtcttctcaaagtttctacattcttcactaacaaacaaatcatgtgatatgacaaa |
24899766 |
T |
|
| Q |
101 |
gcaagaatagcaaaagtagaacagatcgaaaacagaccaaggaaaggcggaaggcctatcgatgaattatctttccccttgttgctctctgaagaagaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24899765 |
gcaagaatagcaaaagtagaacagatcgaaaacagaccaaggaaaggcggaaggcctatcgatgaattatctttccccttgttgctctctgaagaagaac |
24899666 |
T |
|
| Q |
201 |
aattggctttgctttcactctctatctcgttcaacatannnnnnncgagctgttctgtttctccgctctctatcatattcagcaatgcctctgatatgtc |
300 |
Q |
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|
||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24899665 |
aattgactttgctttcactctctatctcgttcaacatatttttttcgagctgttatgtttctccgctctctatcatattcagcaatgcctctgatatgtc |
24899566 |
T |
|
| Q |
301 |
agcaactagacttgaaccttttggaaataccta |
333 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
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|
| T |
24899565 |
agcaactagacttgaaccttttgggaataccta |
24899533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 24912111 - 24911779
Alignment:
| Q |
1 |
cttgcttgtacatctccataatcgtgttaatgctaaaattgcatgtcttctcaaagtttctacattcttcactaacaaacaaatcatgtgatatgacaaa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24912111 |
cttggttgtacatctccataatcgtgttaatgctaaaactgtgtgttttctcaaagtttctacattcttcactaacaaacaaatcatgtgatatgacaat |
24912012 |
T |
|
| Q |
101 |
gcaagaatagcaaaagtagaacagatcgaaaacagaccaaggaaaggcggaaggcctatcgatgaattatctttccccttgttgctctctgaagaagaac |
200 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
24912011 |
gcaagaacagcaaaaatagaacagattgaaaacagaccaaggaaaggctgaaggcctatagatgaattatttttccccttgttgctctctaaagaagaac |
24911912 |
T |
|
| Q |
201 |
aattggctttgctttcactctctatctcgttcaacatannnnnnncgagctgttctgtttctccgctctctatcatattcagcaatgcctctgatatgtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24911911 |
aattggctttgctttcactctctatctcgttcaacatatttttttcgagctgttctgtttctccgctctctatcatattcagcaatgcctctgatatgtc |
24911812 |
T |
|
| Q |
301 |
agcaactagacttgaaccttttggaaataccta |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24911811 |
agcaactagacttgaaccttttggaaataccta |
24911779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 24988792 - 24988461
Alignment:
| Q |
1 |
cttgcttgtacatctccataatcgtgttaatgctaaaattgcatgtcttctcaaagtttctacattcttcactaacaaacaaatcatgtgatatgacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
24988792 |
cttgcttgtacatctccataatcgtgttaatgctaaaactgtgtgttttctcaaagtttctacattcttcactaacaa-caaatcatgtgatatgacaac |
24988694 |
T |
|
| Q |
101 |
gcaagaatagcaaaagtagaacagatcgaaaacagaccaaggaaaggcggaaggcctatcgatgaattatctttccccttgttgctctctgaagaagaac |
200 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
24988693 |
gcaagaatagcaaaaaaagaacagattgaaaacagagcaaggaaaggctgaaggcctatcgatgaattatttttccccttgttgctctctaaagaagaac |
24988594 |
T |
|
| Q |
201 |
aattggctttgctttcactctctatctcgttcaacatannnnnnncgagctgttctgtttctccgctctctatcatattcagcaatgcctctgatatgtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24988593 |
aattggctttgctttcactctctatctcgttcaacatatttttttcgagctgttctgtttctccgctctctatcacattcagcaatgcctctgatatgtc |
24988494 |
T |
|
| Q |
301 |
agcaactagacttgaaccttttggaaataccta |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
24988493 |
agcaactagacttgaaccttttggaaataccta |
24988461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 24889383 - 24889320
Alignment:
| Q |
96 |
acaaagcaagaatagcaaaagtagaacagatcgaaaacagaccaaggaaaggcggaaggcctat |
159 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||||||||||| |||| ||||| ||| ||||||| |
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|
| T |
24889383 |
acaaatcaagaatagcaaatgtagaacatatcgaaaacagatcaagaaaaggtggacggcctat |
24889320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 59 - 333
Target Start/End: Complemental strand, 142754 - 142483
Alignment:
| Q |
59 |
tctacattcttcactaacaaacaaatcatgtgatatgacaaagcaagaatagcaaaagtagaacagatcgaaaacagaccaaggaaaggcggaaggccta |
158 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
142754 |
tctacatttttcaccaacaaacaaatcacgtgatatgataaagcaagaatagcaaaagtcgaacagatcgaaaatagaccaaggaaaggcgaaaggccta |
142655 |
T |
|
| Q |
159 |
tcgatgaattatctttccccttgttgctctctgaagaagaacaattggctttgctttcactctctatctcgttcaacatannnnnnncgagctgttctgt |
258 |
Q |
| |
|
| |||||||||| ||| ||| || |||||| |||||||||||||||||||||||||| |||| ||||| ||||||||| | || | |||||| |
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|
| T |
142654 |
tggatgaattattttttccc---tttctctctaaagaagaacaattggctttgctttcattctcaatctcattcaacatatctttttctagttcttctgt |
142558 |
T |
|
| Q |
259 |
ttctccgctctctatcatattcagcaatgcctctgatatgtcagcaactagacttgaaccttttggaaataccta |
333 |
Q |
| |
|
|||||| |||||||||||||||| || ||||||||||||||| || | ||||| |||||||||||||||||||| |
|
|
| T |
142557 |
ttctccactctctatcatattcaacactgcctctgatatgtctgccgcaagactcgaaccttttggaaataccta |
142483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 59 - 333
Target Start/End: Complemental strand, 150698 - 150424
Alignment:
| Q |
59 |
tctacattcttcactaacaaacaaatcatgtgatatgacaaagcaagaatagcaaaagtagaacagatcgaaaacagaccaaggaaaggcggaaggccta |
158 |
Q |
| |
|
|||| ||||||||| |||||||| || |||||||||||||| |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| |||| |
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|
| T |
150698 |
tctatattcttcaccaacaaacagataatgtgatatgacaatgcaagaatagaaaaagtagagcagatcgaaaacaagccaatgaaaggcggaagaccta |
150599 |
T |
|
| Q |
159 |
tcgatgaattatctttccccttgttgctctctgaagaagaacaattggctttgctttcactctctatctcgttcaacatannnnnnncgagctgttctgt |
258 |
Q |
| |
|
|||| ||||||| |||||||||||| || ||| ||||||||||||||| ||||| | | ||| ||||| | |||||||| | || | |||||| |
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|
| T |
150598 |
tcgaggaattatttttccccttgtttctttctaaagaagaacaattggttttgcctcctctccctatcccattcaacatgtctttttctagtttttctgt |
150499 |
T |
|
| Q |
259 |
ttctccgctctctatcatattcagcaatgcctctgatatgtcagcaactagacttgaaccttttggaaataccta |
333 |
Q |
| |
|
|| ||| |||||||||||||| || |||||||||||||| || | | | ||||| |||||||| ||||||||||| |
|
|
| T |
150498 |
ttttccactctctatcatatttagtaatgcctctgatatatcggtagccagactcgaacctttaggaaataccta |
150424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 25056 - 24811
Alignment:
| Q |
4 |
gcttgtacatctccataatcgtgttaatgctaaaa--ttgcatgtcttctcaaagtttctac-attcttcactaacaaacaaa-tcatgtgatatgacaa |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |||||||||||| |||||| |||||||||||||||| |
|
|
| T |
25056 |
gcttgtacatctccataatcgtgttaatgctaaaaactgtgttgttttctcaaagtttctactattcttcactaaacaacaaaatcatgtgatatgacaa |
24957 |
T |
|
| Q |
100 |
agcaagaatag-caaaagtagaac-agatcgaaaacagaccaaggaaa-ggcggaaggcctatcgatgaa-ttatcttt--cccctt--gttgctctct- |
190 |
Q |
| |
|
|||||||||| ||||| ||||| |||| ||||||||| |||||||| ||| ||||||||||||||||| |||| ||| |||||| ||||||||| |
|
|
| T |
24956 |
cgcaagaatagacaaaaaaagaacaagattgaaaacagagcaaggaaagggctgaaggcctatcgatgaatttattttttccccctttgtttgctctcta |
24857 |
T |
|
| Q |
191 |
gaagaagaacaa-ttggcttt--gctttcactctctatctcgttca |
233 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
24856 |
aaagaagaacaatttggctttagtctttcactctctatctcgttca |
24811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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