View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_high_34 (Length: 292)
Name: NF5290_high_34
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 3130838 - 3130566
Alignment:
| Q |
18 |
aacatattcatgatgcaacaaaagaaatactgtcaagagaaataataacctcctcaagaactgctttaacttgaagaagcttttcagcatgctcaagatc |
117 |
Q |
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| T |
3130838 |
aacatattcatgatgcaacaaaagaaatactgtcaagagaaataataacctcctcaagaactgctttaacttgaagaagcttttcagcatgctcaagatc |
3130739 |
T |
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| Q |
118 |
ttcagcttcattatcaccttctagatcttgtctaaataaacacagaaacataatccattcaaaactccagcttaacattcattatgtcgactaaaaaact |
217 |
Q |
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| T |
3130738 |
ttcagcttcgttatcaccttctagatcttgtctaaataaacacagaaacataatccattcaaaactccagcttaacattcattatgtcgactaaaaaact |
3130639 |
T |
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| Q |
218 |
gcttgcaactactacccgtaagcataagagcatacatttgaatccaaacatagcaaaaaaggtaatatattgc |
290 |
Q |
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| T |
3130638 |
gcttgcaactactactcgtaagcataagagcatacatttgaatccaaacatagcaaaaaaggtaatatattgc |
3130566 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 1924197 - 1924135
Alignment:
| Q |
49 |
gtcaagagaaataataacctcctcaagaactgctttaacttgaagaagcttttcagcatgctc |
111 |
Q |
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| T |
1924197 |
gtcaagagaattaaaaacctcttcgagaacagctttaacttgacggagcttttcaccatgctc |
1924135 |
T |
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