View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_high_38 (Length: 269)
Name: NF5290_high_38
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 36171000 - 36171244
Alignment:
| Q |
18 |
cattgagggataataaagtgtttgaaaaaataaatccagatgttacatattaacatgcttaatgaggagggtaagcaccttaatttccaagatgcacgca |
117 |
Q |
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| T |
36171000 |
cattgagggataataaagtgtttgaaaaaataaatccagatgttacatattaacatgcttaatgaggagggtaagcaccttaatttccaagatgcacgca |
36171099 |
T |
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| Q |
118 |
aaaaatttgtgtcggactcaacatcctgcattattaatttatataatgagtgaagtacggcgctgtttctttgaagcaaaaaagtgtagttcaagctgtt |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36171100 |
aaaaatttgtgtcggactcaacttcctgcattattaatttatataatgagtgaagtacggcgctgtttctttgaagcaaaaaagtgtagttcaagctgtt |
36171199 |
T |
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| Q |
218 |
aatttacagagaagatctaccttttcgatctttagtagtataatt |
262 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
36171200 |
aatttacagataagatctaccttttcgatctttagtagtttaatt |
36171244 |
T |
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