View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_high_4 (Length: 626)
Name: NF5290_high_4
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_high_4 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 57 - 626
Target Start/End: Complemental strand, 26434871 - 26434286
Alignment:
| Q |
57 |
tagcaaagagcgtcaacgtaatatttcacatttttcttcaatgaaaagcatcatttttagaataaatggattgctcaaaagtaaagtagcgttgtggagc |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26434871 |
tagcaaagagcgtcaacgtaatatttcacatttttcttcaataaaaagcatcatttttagaacaaatggattgctcaaaagtaaagtagcgttgtggagc |
26434772 |
T |
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| Q |
157 |
tcactcatttatggaaaattgagtc---gttgcgttggtttaatcagtttacacatatggccaagttagaataatagatgagtgtacttaactggtttgc |
253 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26434771 |
tcactcatttatgaaaaattgagtcgttgttgcgttggtttaatcagtttacacatatggccaagttagaataatagatgagtgtacttaactggtttgc |
26434672 |
T |
|
| Q |
254 |
ttaaaagtac-------------nnnnnnnnncaatttgaactaacattgaagtgaagtagaacggttttaggtctatctcctggcccttatttctgcaa |
340 |
Q |
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|||||||||| ||||||| ||||||||||||||||||| |||||||| || |||||||| ||||||| | ||||| | |
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| T |
26434671 |
ttaaaagtacttttttttttcaattcggtattcaatttgtactaacattgaagtgaagtcgaacggttctatgtctatcttctggcccgtgtttctttat |
26434572 |
T |
|
| Q |
341 |
cttcaaataattcatttaagatcatgtgaattaaagataactttaaaaattagtaccgaaagaagttaagcacaaaagtatgatgcggatcca-gtacga |
439 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | |||||| |
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| T |
26434571 |
cttcaaataattcatttaagatcatgtgaattaa--ataactttaaaaattagtactgaaagaagttacgcacaaaagtatgatgcggatcaatgtacga |
26434474 |
T |
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| Q |
440 |
tacattttagaagtcatatataatgaatcccaccattataacacnnnnnnngaaggatcagccagatcaaagtccttcaattacatcattaaaacagggg |
539 |
Q |
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| T |
26434473 |
tacattttagaagtcatatataatcaatcccaccattataacac-aaaaaagaaggatcagccagatcaaaatccttcaattacatcattaaaacagggg |
26434375 |
T |
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| Q |
540 |
aaagctactaatgaaacctaaaa--acggatctacgaaactaaacaccaataaacaacaacgaagtagttttcaaatctaagaactagt |
626 |
Q |
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| T |
26434374 |
aaagctactaatgaaacctaaaaacacggatctacgaaactaaacaccaataaacaacaacgaagtagttttcaaatctaagaactagt |
26434286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 57 - 626
Target Start/End: Complemental strand, 26833582 - 26832997
Alignment:
| Q |
57 |
tagcaaagagcgtcaacgtaatatttcacatttttcttcaatgaaaagcatcatttttagaataaatggattgctcaaaagtaaagtagcgttgtggagc |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26833582 |
tagcaaagagcgtcaacgtaatatttcacatttttcttcaataaaaagcatcatttttagaacaaatggattgctcaaaagtaaagtagcgttgtggagc |
26833483 |
T |
|
| Q |
157 |
tcactcatttatggaaaattgagtc---gttgcgttggtttaatcagtttacacatatggccaagttagaataatagatgagtgtacttaactggtttgc |
253 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26833482 |
tcactcatttatgaaaaattgagtcgttgttgcgttggtttaatcagtttacacatatggccaagttagaataatagatgagtgtacttaactggtttgc |
26833383 |
T |
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| Q |
254 |
ttaaaagtac-------------nnnnnnnnncaatttgaactaacattgaagtgaagtagaacggttttaggtctatctcctggcccttatttctgcaa |
340 |
Q |
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|||||||||| ||||||| ||||||||||||||||||| |||||||| || |||||||| ||||||| | ||||| | |
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| T |
26833382 |
ttaaaagtacttttttttttcaattcggtattcaatttgtactaacattgaagtgaagtcgaacggttctatgtctatcttctggcccgtgtttctttat |
26833283 |
T |
|
| Q |
341 |
cttcaaataattcatttaagatcatgtgaattaaagataactttaaaaattagtaccgaaagaagttaagcacaaaagtatgatgcggatcca-gtacga |
439 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | |||||| |
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| T |
26833282 |
cttcaaataattcatttaagatcatgtgaattaa--ataactttaaaaattagtactgaaagaagttacgcacaaaagtatgatgcggatcaatgtacga |
26833185 |
T |
|
| Q |
440 |
tacattttagaagtcatatataatgaatcccaccattataacacnnnnnnngaaggatcagccagatcaaagtccttcaattacatcattaaaacagggg |
539 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26833184 |
tacattttagaagtcatatataatcaatcccaccattataacac-aaaaaagaaggatcagccagatcaaaatccttcaattacatcattaaaacagggg |
26833086 |
T |
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| Q |
540 |
aaagctactaatgaaacctaaaa--acggatctacgaaactaaacaccaataaacaacaacgaagtagttttcaaatctaagaactagt |
626 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26833085 |
aaagctactaatgaaacctaaaaacacggatctacgaaactaaacaccaataaacaacaacgaagtagttttcaaatctaagaactagt |
26832997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 26833692 - 26833653
Alignment:
| Q |
18 |
tttggaacataaaggacatttttaaagatggtggaaggat |
57 |
Q |
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| T |
26833692 |
tttggaacataaaggacatttttaaagatggtggaaggat |
26833653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 26434981 - 26434942
Alignment:
| Q |
18 |
tttggaacataaaggacatttttaaagatggtggaaggat |
57 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
26434981 |
tttgaaacataaaggacatttttaaagatggtggaaggat |
26434942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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