View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_high_47 (Length: 244)
Name: NF5290_high_47
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 7529271 - 7529050
Alignment:
| Q |
14 |
atcacaaccattcattgaattaacccactttaatggtaatagaaatgtccttaatttgtaagcattgagaagaggagttggaacttgccagcaagaatcc |
113 |
Q |
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| T |
7529271 |
atcacaaccattcattgaattaacccactttaatggtaatagaaatgtccttaatttgtaagcattgagaagagaagttggaacttgccaggaatgattc |
7529172 |
T |
|
| Q |
114 |
aatttaaagccaaaagagacatgacgaggttgtttgtcaatatgctgcccctttttattaactaaaagatagtcatttcttgaaatagaacttgccagat |
213 |
Q |
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|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |
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| T |
7529171 |
aattgaaaaccaaaagagacatgacgaggttgtttatcaatatgctgcccctttttattaactaaaagacaatcatttcttgaaataacacttgccagat |
7529072 |
T |
|
| Q |
214 |
catgcacaatatcatgcatttg |
235 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
7529071 |
catgcataatatcatgcatttg |
7529050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 47 - 235
Target Start/End: Complemental strand, 7521191 - 7521003
Alignment:
| Q |
47 |
tggtaatagaaatgtccttaatttgtaagcattgagaagaggagttggaacttgccagcaagaatccaatttaaagccaaaagagacatgacgaggttgt |
146 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
7521191 |
tggtaatagaaatgtccttaatttgtaagcattgagaagagaagttggaacttgccaggaagaatccaattgaaagccaaaagagacatgacgaggttgt |
7521092 |
T |
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| Q |
147 |
ttgtcaatatgctgcccctttttattaactaaaagatagtcatttcttgaaatagaacttgccagatcatgcacaatatcatgcatttg |
235 |
Q |
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| T |
7521091 |
ttgtcaatatgctgcccctttttattaactaaaagatagtcatctcttgaaacaaaagttgccagatcatgcacaatatcatgcatttg |
7521003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 47 - 235
Target Start/End: Original strand, 7721291 - 7721479
Alignment:
| Q |
47 |
tggtaatagaaatgtccttaatttgtaagcattgagaagaggagttggaacttgccagcaagaatccaatttaaagccaaaagagacatgacgaggttgt |
146 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| |
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| T |
7721291 |
tggtaatagaaatgtccttaaattgtaagcattgagaagagaagttggaacttgccaggaagaatccaattcaaagccaaaagagacatgacggggttgt |
7721390 |
T |
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| Q |
147 |
ttgtcaatatgctgcccctttttattaactaaaagatagtcatttcttgaaatagaacttgccagatcatgcacaatatcatgcatttg |
235 |
Q |
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| T |
7721391 |
ttatcaatatgctgcccctttttattaactaaaagatagtcatttcttgaaataaaacttgccagatcatgcacaatatcatgcatttg |
7721479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 47 - 235
Target Start/End: Complemental strand, 7483122 - 7482934
Alignment:
| Q |
47 |
tggtaatagaaatgtccttaatttgtaagcattgagaagaggagttggaacttgccagcaagaatccaatttaaagccaaaagagacatgacgaggttgt |
146 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7483122 |
tggtaacagaaatgtccttaatttgtaagcattgagaagagaagttggaacttgccaggaagaatccaatttaaagccaaaagagacatgacgaggttgt |
7483023 |
T |
|
| Q |
147 |
ttgtcaatatgctgcccctttttattaactaaaagatagtcatttcttgaaatagaacttgccagatcatgcacaatatcatgcatttg |
235 |
Q |
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|| ||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7483022 |
ttatcaatatgctgcccctttttattaactaaaagacaatcatttcttgaaataacacttgccagatcatgcacaatatcatgcatttg |
7482934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 48 - 235
Target Start/End: Complemental strand, 7495520 - 7495333
Alignment:
| Q |
48 |
ggtaatagaaatgtccttaatttgtaagcattgagaagaggagttggaacttgccagcaagaatccaatttaaagccaaaagagacatgacgaggttgtt |
147 |
Q |
| |
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||||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
7495520 |
ggtaatagaaatgtctttaatttgtgagcattgagaagagaagttggagcttgccaggaagaatccaattcaaagccaaaagagacatgacgaggttgtc |
7495421 |
T |
|
| Q |
148 |
tgtcaatatgctgcccctttttattaactaaaagatagtcatttcttgaaatagaacttgccagatcatgcacaatatcatgcatttg |
235 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7495420 |
tgtcaatatgttgccccttttctttaactaaaagatagtcatttcttgaaataaaacttgccagatcatgcacaatatcatgcatttg |
7495333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 48 - 235
Target Start/End: Original strand, 7128014 - 7128201
Alignment:
| Q |
48 |
ggtaatagaaatgtccttaatttgtaagcattgagaagaggagttggaacttgccagcaagaatccaatttaaagccaaaagagacatgacgaggttgtt |
147 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| || | ||||| |
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| T |
7128014 |
ggtaatagaaatgtccttaatttgtgagcattgagaagagaagttggaacttgccaggaagaatccaatataaagccaaaagagacatggcgggtttgtt |
7128113 |
T |
|
| Q |
148 |
tgtcaatatgctgcccctttttattaactaaaagatagtcatttcttgaaatagaacttgccagatcatgcacaatatcatgcatttg |
235 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||||||| |||||||| | || ||||||||||||||||||||||||||||||| |
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| T |
7128114 |
cgtcaatattctgctcctttttattaactaaaagatagtcatctcttgaaacaaaagttgccagatcatgcacaatatcatgcatttg |
7128201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 47 - 211
Target Start/End: Original strand, 7717459 - 7717623
Alignment:
| Q |
47 |
tggtaatagaaatgtccttaatttgtaagcattgagaagaggagttggaacttgccagcaagaatccaatttaaagccaaaagagacatgacgaggttgt |
146 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || || ||||| ||||||||||||||||||| |||||||| |
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| T |
7717459 |
tggtaatagaaatgtccttaatttgtaagcattgagaagagaagttggaacttgccaggaatgattcaattgaaagccaaaagagacatgatgaggttgt |
7717558 |
T |
|
| Q |
147 |
ttgtcaatatgctgcccctttttattaactaaaagatagtcatttcttgaaatagaacttgccag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
7717559 |
ttgtcaatatgctgcccctttttattaactaaaagatagtcatttcttgaaataaaacatgccag |
7717623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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