View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5290_high_51 (Length: 219)

Name: NF5290_high_51
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5290_high_51
NF5290_high_51
[»] chr4 (48 HSPs)
chr4 (19-203)||(27506683-27506867)
chr4 (19-203)||(27485914-27486098)
chr4 (19-203)||(27478854-27479038)
chr4 (19-203)||(27497293-27497477)
chr4 (23-203)||(27570024-27570204)
chr4 (19-203)||(27420393-27420577)
chr4 (19-203)||(27563317-27563501)
chr4 (23-162)||(27412690-27412829)
chr4 (23-203)||(27415609-27415786)
chr4 (19-202)||(27468298-27468481)
chr4 (29-203)||(27425797-27425971)
chr4 (19-203)||(27527146-27527326)
chr4 (19-202)||(27503908-27504091)
chr4 (48-162)||(27411456-27411570)
chr4 (19-203)||(27565922-27566106)
chr4 (19-202)||(27475550-27475733)
chr4 (20-202)||(27524510-27524692)
chr4 (21-159)||(27585717-27585855)
chr4 (48-203)||(27486968-27487123)
chr4 (35-202)||(27514877-27515044)
chr4 (39-162)||(27567281-27567404)
chr4 (38-191)||(27557486-27557639)
chr4 (19-191)||(27423219-27423391)
chr4 (48-163)||(27424514-27424629)
chr4 (19-202)||(27489946-27490129)
chr4 (50-189)||(27501316-27501455)
chr4 (48-189)||(27513776-27513917)
chr4 (39-203)||(27414295-27414459)
chr4 (39-203)||(27556370-27556534)
chr4 (19-202)||(27508838-27509021)
chr4 (49-163)||(27571648-27571762)
chr4 (40-162)||(27421923-27422049)
chr4 (39-163)||(27419062-27419186)
chr4 (48-203)||(27431148-27431303)
chr4 (48-203)||(27444794-27444949)
chr4 (50-191)||(27554306-27554447)
chr4 (49-203)||(27498400-27498554)
chr4 (39-99)||(27559231-27559291)
chr4 (48-203)||(27479886-27480041)
chr4 (48-123)||(27495601-27495676)
chr4 (48-203)||(27505702-27505857)
chr4 (38-96)||(17970391-17970449)
chr4 (48-92)||(27460574-27460618)
chr4 (40-96)||(27540099-27540155)
chr4 (49-92)||(27473988-27474031)
chr4 (48-135)||(27595438-27595525)
chr4 (39-100)||(27600641-27600702)
chr4 (48-92)||(27466917-27466961)
[»] chr5 (3 HSPs)
chr5 (29-203)||(1756738-1756912)
chr5 (35-203)||(1754673-1754841)
chr5 (50-163)||(1754243-1754356)
[»] chr3 (11 HSPs)
chr3 (38-191)||(55084783-55084936)
chr3 (35-203)||(50909945-50910113)
chr3 (41-203)||(38024868-38025030)
chr3 (41-203)||(38031320-38031482)
chr3 (42-163)||(38043928-38044049)
chr3 (38-95)||(48840702-48840759)
chr3 (42-203)||(50911863-50912024)
chr3 (41-106)||(38028759-38028824)
chr3 (48-93)||(50904792-50904837)
chr3 (41-106)||(38040074-38040139)
chr3 (35-203)||(50913481-50913649)
[»] chr8 (2 HSPs)
chr8 (40-203)||(21607288-21607451)
chr8 (38-124)||(21634607-21634693)
[»] chr2 (1 HSPs)
chr2 (38-96)||(3073661-3073719)
[»] chr7 (1 HSPs)
chr7 (137-201)||(21477463-21477526)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 27506867 - 27506683
Alignment:
Q  19 agaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27506867 agaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 27506768  T
Q  119 tgaaacaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27506767 tgaaacaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 27506683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 27485914 - 27486098
Alignment:
Q  19 agaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 118  Q
    |||||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27485914 agaagttacgtgttgaaagacgccttcagtgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 27486013  T
Q  119 tgaaacaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  27486014 tgaaacaatggttggttcaagtatgatattgggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctttg 27486098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 27478854 - 27479038
Alignment:
Q  19 agaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 118  Q
    ||||||||| ||||| || |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27478854 agaagttatatgttggaacacatcttcggagcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 27478953  T
Q  119 tgaaacaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  27478954 tgaaacaatggttggttcaagtatgatattgggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctttg 27479038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 27497293 - 27497477
Alignment:
Q  19 agaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 118  Q
    |||||||||| |||| ||||||| ||||||||||||||||||||| |||||  ||||||||||||||||||| ||||| || ||||||   | ||| | |    
T  27497293 agaagttatgcgttggaagacattttcagtgcaaggaatggtgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatat 27497392  T
Q  119 tgaaacaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    |||||||||||||||||||||||||| || ||||||||||||||| | ||||| ||||| ||||| |||||||||||||||||||    
T  27497393 tgaaacaatggttggtttaagtatgagatagggatcacaaaccgcttttgtttatctccaacatacactgcaacatagccctttg 27497477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 27570024 - 27570204
Alignment:
Q  23 gttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaa 122  Q
    ||||| |||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||| || ||||||   ||||| |||||||    
T  27570024 gttatatgttgaaagatatcttcggtgcaaggaatggtgaggccacccatgggatgatcatatccgaactcttcctcagcttgactcagcaagtcttgaa 27570123  T
Q  123 acaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    |  | |||||| ||||||||||||  ||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||    
T  27570124 atgaaggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttg 27570204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 27420577 - 27420393
Alignment:
Q  19 agaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 118  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||  |||||   |||||  ||    
T  27420577 agaagttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaacttgactcagcaagcct 27420478  T
Q  119 tgaaacaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    |||||  | |||||| | ||||||||||  ||||| | | ||||||||||||||||||| ||||||||||||| ||| |||||||    
T  27420477 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttg 27420393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 27563317 - 27563501
Alignment:
Q  19 agaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 118  Q
    ||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||| ||||||   ||||| |||    
T  27563317 agaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttcggcttgactcagcaaatct 27563416  T
Q  119 tgaaacaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    |||||||||| |||||| ||||||||||  ||||||||||  | | | ||||| ||||| || || ||||||| |||||||||||    
T  27563417 tgaaacaatgtttggttcaagtatgatacggggatcacaattctcttttgtttatctccaacgtacactgcaagatagccctttg 27563501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 27412829 - 27412690
Alignment:
Q  23 gttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaa 122  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||   |  || |||||||    
T  27412829 gttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaa 27412730  T
Q  123 acaatggttggtttaagtatgatattgggatcacaaaccg 162  Q
    | ||||||||||| ||||||||||||||||||||||||||    
T  27412729 ataatggttggttcaagtatgatattgggatcacaaaccg 27412690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 27415786 - 27415609
Alignment:
Q  23 gttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaa 122  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| ||||| || ||||||   | ||| |||||||    
T  27415786 gttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccacccatggaatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaa 27415687  T
Q  123 acaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    || |||||||||| ||||||||||| ||||||||||| ||| | |||||   ||| ||||| ||||||| ||| |||||||    
T  27415686 acgatggttggttcaagtatgatatggggatcacaaatcgcttttgttt---tccaacatacactgcaagatatccctttg 27415609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 27468298 - 27468481
Alignment:
Q  19 agaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 118  Q
    |||| |||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || | ||||   | ||| |||    
T  27468298 agaaattatatgttggaagacatcttccgtgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtct 27468397  T
Q  119 tgaaacaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagcccttt 202  Q
    |||||  | |||||||||||||||||||  ||||  |||||||||  | |||||||||| ||||| || |||||||||||||||    
T  27468398 tgaaatgaaggttggtttaagtatgatacagggactacaaaccgcaccagtttctctccaacatacaccgcaacatagcccttt 27468481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 27425971 - 27425797
Alignment:
Q  29 tgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatg 128  Q
    |||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||   ||||   |  || ||||||||  |||    
T  27425971 tgttgaaatacatcctcggtgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaaattgactcaataagtcttgaaatgatg 27425872  T
Q  129 gttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    ||||||| ||||||||||||||||||||| ||||| | ||||||||||| ||||||||||||| ||| |||||||    
T  27425871 gttggttcaagtatgatattgggatcacataccgcttttgtttctctccaacatatactgcaagatatccctttg 27425797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 27527326 - 27527146
Alignment:
Q  19 agaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 118  Q
    ||||||||| ||||| |||||||||||| |||||||||| | ||     ||||||||||||||||||||||| ||||| || ||||||   ||||| |||    
T  27527326 agaagttatatgttggaagacatcttcactgcaaggaattgggat----cccatgggatgatcatatccaaactcttcctcagcttgactcagcaactct 27527231  T
Q  119 tgaaacaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
     ||||| ||||||||||||||| |||||||||||||||||||||  ||||||| ||||| ||||| || |||| |||||||||||    
T  27527230 agaaacgatggttggtttaagtgtgatattgggatcacaaaccgtttctgtttatctccaacatacaccgcaagatagccctttg 27527146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 27504091 - 27503908
Alignment:
Q  19 agaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 118  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||| || ||||||   | ||| |||    
T  27504091 agaagttatgtgttggaagacatcttcggtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgactcaacaagtct 27503992  T
Q  119 tgaaacaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagcccttt 202  Q
    |||||  | |||||||| ||||||||||  || |  |||||||||| |  ||||||||| ||||| || | |||||||||||||    
T  27503991 tgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccaatttctctccaacatacacggaaacatagcccttt 27503908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 27411456 - 27411570
Alignment:
Q  48 tgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatat 147  Q
    |||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||| ||| |||||||||||| |||||||||| ||||||||||     
T  27411456 tgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaacgatggttggttcaagtatgatac 27411555  T
Q  148 tgggatcacaaaccg 162  Q
    ||| ||||| |||||    
T  27411556 tggaatcacgaaccg 27411570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 27565922 - 27566106
Alignment:
Q  19 agaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 118  Q
    ||||||||| ||||| |||||||||||    |||||||||||||| |||||||| |||||||||||||||   ||||| ||  ||||    ||||| |||    
T  27565922 agaagttatatgttggaagacatcttcgccacaaggaatggtgaggccacccattggatgatcatatccatgctcttcctcaacttgtatcagcaagtct 27566021  T
Q  119 tgaaacaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    ||||||||||||||||| | ||||||||| ||||||||||| ||| | ||||||||||| ||||| ||||||| ||| |||||||    
T  27566022 tgaaacaatggttggttcaggtatgatatggggatcacaaatcgcttttgtttctctccaacatacactgcaagatatccctttg 27566106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 27475550 - 27475733
Alignment:
Q  19 agaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 118  Q
    ||||||||| ||||| ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||   | ||| |||    
T  27475550 agaagttatatgttggaagacatcttcggagcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcggcttgactcaacaagtct 27475649  T
Q  119 tgaaacaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagcccttt 202  Q
    |||||  | ||||| || ||||||||||  || |  |||||||||| |  ||||||||| ||||| || |||||||||||||||    
T  27475650 tgaaatgaaggttgattcaagtatgatacaggaactacaaaccgcgccaatttctctccaacatacacggcaacatagcccttt 27475733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 27524692 - 27524510
Alignment:
Q  20 gaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattctt 119  Q
    |||||||| ||||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| || |||||||  | ||| ||||    
T  27524692 gaagttatatgttggaagacatcttcggtgcacggaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgattcaacaagtctt 27524593  T
Q  120 gaaacaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagcccttt 202  Q
    ||||  | |||||||| || |||||||  || |  |  ||||||||| |||||||||| ||||| |||||||| |||||||||    
T  27524592 gaaatgaaggttggttcaaatatgatacaggaactatgaaccgcgtcagtttctctccaacatacactgcaacgtagcccttt 27524510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 27585855 - 27585717
Alignment:
Q  21 aagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttg 120  Q
    ||||||| ||||  ||| ||||||| ||||||||||||||||| || ||||| ||||||||||||||||| |||||||| ||||||   | ||| |||||    
T  27585855 aagttatatgtttgaaggcatcttctgtgcaaggaatggtgagacctcccattggatgatcatatccaaactcttcttcggcttgactcatcaaatcttg 27585756  T
Q  121 aaacaatggttggtttaagtatgatattgggatcacaaa 159  Q
    ||||||||||||||| ||||||||||  |||||||||||    
T  27585755 aaacaatggttggttcaagtatgatacggggatcacaaa 27585717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 203
Target Start/End: Complemental strand, 27487123 - 27486968
Alignment:
Q  48 tgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatat 147  Q
    |||||||||| || || |||||||| |||||||||||| |||||| |||||| ||||| |  | ||||||||||||| |||||||||||||||||||||     
T  27487123 tgcaaggaatagtaagaccacccattggatgatcatattcaaattgttcttcagcttggttcaacaattcttgaaacgatggttggtttaagtatgataa 27487024  T
Q  148 tgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
     ||||||||||||||| ||  ||||||||| || || ||||| | ||| |||||||    
T  27487023 agggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttg 27486968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 35 - 202
Target Start/End: Complemental strand, 27515044 - 27514877
Alignment:
Q  35 aagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggt 134  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| || | ||||   | ||| ||||||||  | ||||| |    
T  27515044 aagacatcttctgtacaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttgat 27514945  T
Q  135 ttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagcccttt 202  Q
    | ||||||||||  ||||  |||||||||  | |||||||||| ||||| || |||||||||||||||    
T  27514944 tcaagtatgatacagggactacaaaccgcaccagtttctctccaacatacaccgcaacatagcccttt 27514877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 162
Target Start/End: Complemental strand, 27567404 - 27567281
Alignment:
Q  39 catcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaa 138  Q
    |||||||  |||||||||| ||||| |||||||| ||||||||||| |||||||||||||| | ||||| ||| |||||||||||| |||||||||| ||    
T  27567404 catcttcgctgcaaggaattgtgagaccacccattggatgatcataaccaaattcttcttctgtttgatttagtaattcttgaaacgatggttggttcaa 27567305  T
Q  139 gtatgatattgggatcacaaaccg 162  Q
    |||||||| ||| ||||| |||||    
T  27567304 gtatgatactggaatcacgaaccg 27567281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 191
Target Start/End: Complemental strand, 27557639 - 27557486
Alignment:
Q  38 acatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttta 137  Q
    ||||||||  |||| ||||| ||||| |||||||| |||||| ||||| |||||| ||| || |||||||  ||||||||||||||  ||||||||||||    
T  27557639 acatcttctctgcatggaatagtgagaccacccattggatgaacatattcaaattgttcctcagcttgattcagcaattcttgaaatgatggttggttta 27557540  T
Q  138 agtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaa 191  Q
    ||||||| |||||||||||||||| | ||  || |||||| |||||||| ||||    
T  27557539 agtatgacattgggatcacaaacctcttcatttcctctccaacatatacggcaa 27557486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 27423391 - 27423219
Alignment:
Q  19 agaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 118  Q
    ||||||||| ||||| || |||||||| |||||||||| |||||| ||||||||||||||||  || ||||| ||||| || ||||||   | |||||||    
T  27423391 agaagttatatgttggaaaacatcttccgtgcaaggaacggtgaggccacccatgggatgattgtaaccaaactcttcctcggcttgactcaacaattct 27423292  T
Q  119 tgaaacaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaa 191  Q
    |||||  | |||||||| |||||||||||  ||||||||  ||| |||||||||| ||| |||||||| ||||    
T  27423291 tgaaatgaaggttggttcaagtatgatatgcggatcacatgccgtgtctgtttctatccaacatatacagcaa 27423219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 27424514 - 27424629
Alignment:
Q  48 tgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatat 147  Q
    |||| |||||||| || |||||||| ||||||||||||||| |||||||||| | ||||| |||||||||||||||  | |||||||| ||||||||||     
T  27424514 tgcacggaatggtaagaccacccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaagtatgatac 27424613  T
Q  148 tgggatcacaaaccgc 163  Q
    ||| ||||||||||||    
T  27424614 tggaatcacaaaccgc 27424629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 27490129 - 27489946
Alignment:
Q  19 agaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 118  Q
    |||| |||||| ||| ||| |||||||  ||  |||||||||||| |||||||| ||||||||||||||||| ||||| || |||||||  | ||| |||    
T  27490129 agaaattatgtattggaagtcatcttcgttgacaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgattcaacaaatct 27490030  T
Q  119 tgaaacaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagcccttt 202  Q
    |||||  |||||| |||||||||||| |  ||||  ||||||||  | ||||||||||| ||||| ||| ||||||||||||||    
T  27490029 tgaaatgatggtttgtttaagtatgacacagggactacaaaccgtttttgtttctctccaacatacactacaacatagcccttt 27489946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 50 - 189
Target Start/End: Complemental strand, 27501455 - 27501316
Alignment:
Q  50 caaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatattg 149  Q
    |||||||| ||||| |||||| | |||||||| ||| |||||| ||| || ||||| |  | ||| ||||||||||||||||||||||||||||||||||    
T  27501455 caaggaatagtgagaccacccgttggatgatcgtattcaaattgttcctcggcttggttcaacaagtcttgaaacaatggttggtttaagtatgatattg 27501356  T
Q  150 ggatcacaaaccgcgtctgtttctctccgacatatactgc 189  Q
    |||||||||||||  ||  || |||||| |||||||||||    
T  27501355 ggatcacaaaccgtttcatttcctctccaacatatactgc 27501316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 27513776 - 27513917
Alignment:
Q  48 tgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatat 147  Q
    |||||||||| ||||| |||||||| |||||||||||| || ||| |||||| ||||| |  | ||||||||| ||| | | |||||| |||||||||||    
T  27513776 tgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttcagcttggttcaacaattcttggaacgaggtttggttcaagtatgatat 27513875  T
Q  148 tgggatcacaaaccgcgtctgtttctctccgacatatactgc 189  Q
    |||||||||||||||| ||  ||||||||| ||||| |||||    
T  27513876 tgggatcacaaaccgcttcattttctctcctacatacactgc 27513917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 203
Target Start/End: Original strand, 27414295 - 27414459
Alignment:
Q  39 catcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaa 138  Q
    |||||||| |||| ||||| || || |||||||| |||||||||||||||||||||||||| | ||||| ||| |||||||||||  | |||||||| ||    
T  27414295 catcttcactgcacggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaatgagggttggttcaa 27414394  T
Q  139 gtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    ||||||||  || |||||||||||  ||  ||| ||||| || || ||||||| |||||| ||||    
T  27414395 gtatgatacaggaatcacaaaccgtctcattttatctccaacgtagactgcaagatagccttttg 27414459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 203
Target Start/End: Original strand, 27556370 - 27556534
Alignment:
Q  39 catcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaa 138  Q
    |||||||| |||| ||||| ||||| |||||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||  | |||||||| ||    
T  27556370 catcttcactgcatggaattgtgagaccacccatagaatgatcatatccaaattcttcttctgcttgatgtagtaattcttgaaatgaaggttggttcaa 27556469  T
Q  139 gtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
      |||| || || |||||||| ||| ||  ||| ||||| ||||| ||||| | |||||| ||||    
T  27556470 taatgaaatgggaatcacaaatcgcttcattttttctccaacataaactgcgagatagccttttg 27556534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 27509021 - 27508838
Alignment:
Q  19 agaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattct 118  Q
    ||||||||| ||||| || |||||||| | ||| ||||||||||| |||||| | ||||||||||||||||| ||||| || || ||||  | ||| |||    
T  27509021 agaagttatatgttggaacacatcttcggagcatggaatggtgaggccacccgttggatgatcatatccaaactcttcctcagcctgattcaacaagtct 27508922  T
Q  119 tgaaacaatggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagcccttt 202  Q
    |||||  | |||||||| || ||||| |  || |  ||||| |||||| |||||||||| ||||| ||||||||||||||||||    
T  27508921 tgaaatgaaggttggttcaaatatgacacaggaacgacaaaacgcgtcagtttctctccaacatacactgcaacatagcccttt 27508838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 27571762 - 27571648
Alignment:
Q  49 gcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatatt 148  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||||||| | ||||| ||| |||||||||||| |||| ||| | || ||||||| |    
T  27571762 gcaaggaattgtgagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgatact 27571663  T
Q  149 gggatcacaaaccgc 163  Q
    || ||||| ||||||    
T  27571662 ggaatcacgaaccgc 27571648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 27421923 - 27422049
Alignment:
Q  40 atcttcagtgcaaggaatggtgagtccacccatgggatgatcatatcc----aaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtt 135  Q
    ||||||| |||||||||| ||||| |||||| | |||||||| |||||    |||||||||||| ||||||| ||| ||||||||||| |||||||||||    
T  27421923 atcttcactgcaaggaattgtgagaccacccgttggatgatcgtatccatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggtt 27422022  T
Q  136 taagtatgatattgggatcacaaaccg 162  Q
     |||||||||| ||| ||||| |||||    
T  27422023 caagtatgatactggaatcacgaaccg 27422049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 27419062 - 27419186
Alignment:
Q  39 catcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaa 138  Q
    ||||||||  ||||||||| || || |||||||| |||||||||||||||||||||||||| | ||||| ||| |||||||||||| |||| ||| | ||    
T  27419062 catcttcaccgcaaggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaa 27419161  T
Q  139 gtatgatattgggatcacaaaccgc 163  Q
     ||||||| ||| ||||| ||||||    
T  27419162 atatgatactggaatcacgaaccgc 27419186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 48 - 203
Target Start/End: Original strand, 27431148 - 27431303
Alignment:
Q  48 tgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatat 147  Q
    |||||||||| ||||| |||||  | ||||| ||||||||||||| ||| || |||||||  | ||||||||||||  | |||||||| |||||||||||    
T  27431148 tgcaaggaattgtgagaccaccggttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat 27431247  T
Q  148 tgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    |||||||||||||| | ||  ||  || || ||||||||||||| ||| |||||||    
T  27431248 tgggatcacaaacctcttcatttcatccccaacatatactgcaatatatccctttg 27431303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 48 - 203
Target Start/End: Original strand, 27444794 - 27444949
Alignment:
Q  48 tgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatat 147  Q
    |||||||||| ||||| |||||||| ||||| |||||||| |||| ||| || |||||||  |  |||||||||||  ||| |||| | |||||||||||    
T  27444794 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatat 27444893  T
Q  148 tgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    |||||||||||||| | ||  || |||||| || |||||||||| ||| |||||||    
T  27444894 tgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 27444949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 27554447 - 27554306
Alignment:
Q  50 caaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatattg 149  Q
    |||||||| ||||| | |||| | ||||||||||||||||||| ||| || |||||||  ||||||||||||||| |||||||| ||||  | || ||||    
T  27554447 caaggaattgtgagactacccgttggatgatcatatccaaattgttcctcagcttgattcagcaattcttgaaacgatggttggcttaacaaagaaattg 27554348  T
Q  150 ggatcacaaaccgcgtctgtttctctccgacatatactgcaa 191  Q
      |||||||||||| ||  || |||||| |||||||||||||    
T  27554347 atatcacaaaccgcttcatttcctctccaacatatactgcaa 27554306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 203
Target Start/End: Complemental strand, 27498554 - 27498400
Alignment:
Q  49 gcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatatt 148  Q
    ||||||||| ||||| |||||||| |||||||||||| | |||| ||| || ||||| |  | ||| ||||| ||| |||||||||| |||||||||||     
T  27498554 gcaaggaatagtgagaccacccattggatgatcatattcgaattgttcctcggcttggttcaacaagtcttggaacgatggttggttcaagtatgatata 27498455  T
Q  149 gggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    ||||||||||| ||  ||  || |||||| ||||||||||| | ||| |||||||    
T  27498454 gggatcacaaaacgtttcatttcctctccaacatatactgctagatatccctttg 27498400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 27559231 - 27559291
Alignment:
Q  39 catcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttc 99  Q
    |||||||| |||||||||| ||||| |||||||| ||||||||||||||||| ||||||||    
T  27559231 catcttcactgcaaggaattgtgagaccacccattggatgatcatatccaaactcttcttc 27559291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 203
Target Start/End: Complemental strand, 27480041 - 27479886
Alignment:
Q  48 tgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatat 147  Q
    |||||||||||||||| |||||||| |||||||||||| |||||| ||| || ||||| |  | ||| | ||| ||  ||| |||||| ||||||||||     
T  27480041 tgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaacttttggaatgatgtttggttcaagtatgatac 27479942  T
Q  148 tgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
     || |||||||| ||| ||  ||||||||| || |||||||| | |||||| ||||    
T  27479941 aggaatcacaaaacgcttcattttctctcctacgtatactgctagatagccttttg 27479886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 27495676 - 27495601
Alignment:
Q  48 tgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaa 123  Q
    |||||||||||||||| |||||||| ||||||| | ||||||| |||||||| |||| |  |||||||| ||||||    
T  27495676 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaa 27495601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 203
Target Start/End: Original strand, 27505702 - 27505857
Alignment:
Q  48 tgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatat 147  Q
    |||||||||| ||||| |||||||| ||||| |||||| |||||| ||| || ||||| |  | ||||||||| ||  | | |||||| ||||||||||     
T  27505702 tgcaaggaatagtgagaccacccattggatggtcatattcaaattgttcctcagcttggttcaacaattcttggaatgaggtttggttcaagtatgatac 27505801  T
Q  148 tgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
     || |||||||||||| ||  ||||||||| || || ||||| | ||| |||||||    
T  27505802 aggaatcacaaaccgcttcattttctctcctacgtacactgctagatacccctttg 27505857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 17970449 - 17970391
Alignment:
Q  38 acatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttc 96  Q
    |||||||| ||||||||||| ||||| |||||||| |||||||| ||||| ||||||||    
T  17970449 acatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttc 17970391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 27460618 - 27460574
Alignment:
Q  48 tgcaaggaatggtgagtccacccatgggatgatcatatccaaatt 92  Q
    |||||||||||||||| |||||||| |||||||||||| ||||||    
T  27460618 tgcaaggaatggtgagaccacccattggatgatcatattcaaatt 27460574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 27540155 - 27540099
Alignment:
Q  40 atcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttc 96  Q
    ||||||| ||||||||||||| ||||||||||| |||||||  || |||||||||||    
T  27540155 atcttcactgcaaggaatggttagtccacccattggatgatggtacccaaattcttc 27540099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 27474031 - 27473988
Alignment:
Q  49 gcaaggaatggtgagtccacccatgggatgatcatatccaaatt 92  Q
    ||||||||||||||| |||||||| |||||||||||| ||||||    
T  27474031 gcaaggaatggtgagaccacccattggatgatcatattcaaatt 27473988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 27595525 - 27595438
Alignment:
Q  48 tgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtt 135  Q
    |||||||||| || || ||||||||||||||||   ||||||| |||| ||| ||||||  ||| ||||||||||| |||||| ||||    
T  27595525 tgcaaggaattgtaagaccacccatgggatgattgaatccaaactctttttctgcttgacttagtaattcttgaaataatggtcggtt 27595438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 27600702 - 27600641
Alignment:
Q  39 catcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttcc 100  Q
    |||||||  |||||||||| ||||| |||||||| |||||||  || |||||||||||||||    
T  27600702 catcttctttgcaaggaattgtgagaccacccattggatgattgtaaccaaattcttcttcc 27600641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 27466961 - 27466917
Alignment:
Q  48 tgcaaggaatggtgagtccacccatgggatgatcatatccaaatt 92  Q
    |||||||||| ||||| |||||||| |||||||||||| ||||||    
T  27466961 tgcaaggaatagtgagaccacccattggatgatcatattcaaatt 27466917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 1756738 - 1756912
Alignment:
Q  29 tgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatg 128  Q
    ||||| ||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||   | ||| | ||||||| |||    
T  1756738 tgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtattgaaacgatg 1756837  T
Q  129 gttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||  ||||||| |||||||||||    
T  1756838 gttggttcaagtatgatattgggatcacaaaccgcttctgtttctctccaacattcactgcaagatagccctttg 1756912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 1754841 - 1754673
Alignment:
Q  35 aagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggt 134  Q
    ||||||||||| |||||| |||||||||| |||||||| ||||||||||||||||| |||||  | ||||||   | |||   ||||||| ||||||| |    
T  1754841 aagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttccgcagcttgactcaacaaggattgaaacgatggttgat 1754742  T
Q  135 ttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    | |||||||||||||||||||||  |||  ||||||||||||| | ||| |||||||||||||||||||    
T  1754741 tcaagtatgatattgggatcacatgccgtttctgtttctctccaatatacactgcaacatagccctttg 1754673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 1754243 - 1754356
Alignment:
Q  50 caaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatattg 149  Q
    |||||||| ||||| |||||||| |||||||||||| |||| | ||| || | ||  | |||||||| ||||||  | | |||||| ||||||||||  |    
T  1754243 caaggaatagtgagaccacccatcggatgatcatattcaaactgttcctcagatttgtttagcaatttttgaaatgacgattggttcaagtatgatacgg 1754342  T
Q  150 ggatcacaaaccgc 163  Q
    ||||||||||||||    
T  1754343 ggatcacaaaccgc 1754356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 191
Target Start/End: Complemental strand, 55084936 - 55084783
Alignment:
Q  38 acatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttta 137  Q
    |||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||| |||||  ||   | ||| ||||||||  |||||||||| |    
T  55084936 acatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccaaattcttcctccgcccgactcaacaagtcttgaaatgatggttggttca 55084837  T
Q  138 agtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaa 191  Q
    |||| || || ||||||||||||||| ||  ||||||||| ||||| |||||||    
T  55084836 agtaagacatagggatcacaaaccgcttcattttctctccaacatacactgcaa 55084783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 50910113 - 50909945
Alignment:
Q  35 aagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggt 134  Q
    ||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||| ||||||  | ||| | ||||||  | | |||||    
T  50910113 aagacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattcttcctccacttgattcaacaagttttgaaatgaagcttggt 50910014  T
Q  135 ttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    | |||||||| || ||||| |||||||||  |  || |||||| ||||| ||||||| ||| |||||||    
T  50910013 tcaagtatgacatggggataacaaaccgcagcatttgctctccaacatacactgcaagataaccctttg 50909945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 203
Target Start/End: Original strand, 38024868 - 38025030
Alignment:
Q  41 tcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagt 140  Q
    ||||| ||||||||||| ||||| |||||||| || |||||||||||||||||||| || ||||||   |  || | ||||||  | | |||||| ||||    
T  38024868 tcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttggttcaagt 38024967  T
Q  141 atgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    |||| || ||||| ||||||||| ||  || |||||| ||||||||||||| |||||||||||    
T  38024968 atgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttg 38025030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 203
Target Start/End: Original strand, 38031320 - 38031482
Alignment:
Q  41 tcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagt 140  Q
    ||||| ||||||||||| ||||| |||||||| || |||||||||||||||||||| || ||||||   |  || | ||||||  | | |||||| ||||    
T  38031320 tcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttggttcaagt 38031419  T
Q  141 atgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    |||| || ||||| ||||||||| ||  || |||||| ||||||||||||| |||||||||||    
T  38031420 atgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttg 38031482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 38044049 - 38043928
Alignment:
Q  42 cttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagta 141  Q
    |||| ||||||||||| ||||| || ||||| ||||||||||||||||||||||| || ||||||   ||||| ||||||||| | | ||| || |||||    
T  38044049 cttcggtgcaaggaattgtgaggccgcccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtttgattcaagta 38043950  T
Q  142 tgatattgggatcacaaaccgc 163  Q
    ||| || |||||||||||||||    
T  38043949 tgacatagggatcacaaaccgc 38043928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 48840702 - 48840759
Alignment:
Q  38 acatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattctt 95  Q
    |||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  48840702 acatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattctt 48840759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 50911863 - 50912024
Alignment:
Q  42 cttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagta 141  Q
    |||| ||||||||||| || || |||||||| || |||||||||||||||||||| || ||||||   | ||| | ||||||  | | |||||| |||||    
T  50911863 cttctgtgcaaggaattgttaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaacaagttttgaaatgaagcttggttcaagta 50911962  T
Q  142 tgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    |||  | ||||||||||||||  ||   || ||||| |||||||| |||| |||||||||||    
T  50911963 tgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttg 50912024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 38028759 - 38028824
Alignment:
Q  41 tcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttga 106  Q
    ||||| ||||||||||| ||||| || ||||| ||||| ||||||||||||||||| || ||||||    
T  38028759 tcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccaaattcttcctcggcttga 38028824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 50904792 - 50904837
Alignment:
Q  48 tgcaaggaatggtgagtccacccatgggatgatcatatccaaattc 93  Q
    |||||||||||||||| |||||||| |||||||||||||| |||||    
T  50904792 tgcaaggaatggtgaggccacccattggatgatcatatccgaattc 50904837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 38040074 - 38040139
Alignment:
Q  41 tcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttga 106  Q
    ||||| ||||||||||| ||||| || ||||| ||||| |||||||| |||||||| || ||||||    
T  38040074 tcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttga 38040139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 50913649 - 50913481
Alignment:
Q  35 aagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggt 134  Q
    |||||||||||  |||| ||||| || || |||||||| ||||||   || |||||||| ||||| |||||    |||||||||||||| || || |  |    
T  50913649 aagacatcttccttgcagggaattgtaagaccacccattggatgacagtagccaaattcctcttcagcttggctaagcaattcttgaaataaaggctcat 50913550  T
Q  135 ttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    | ||| |||||||||| ||||  |||| | ||  ||||||||| ||||| ||||||| |||||| ||||    
T  50913549 tcaagaatgatattggaatcaagaacctcttcattttctctccaacatacactgcaagatagccttttg 50913481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 21607288 - 21607451
Alignment:
Q  40 atcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaag 139  Q
    |||||| ||||||||||  ||||| |||||||| || |||||||||||||||||||| || ||||||   |  || | ||||||  | | | |||| |||    
T  21607288 atcttctgtgcaaggaaccgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagctcggttcaag 21607387  T
Q  140 tatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 203  Q
    ||||| || ||||| ||||||||| ||  || |||||| |||||||| |||| ||| |||||||    
T  21607388 tatgacatggggataacaaaccgcttcatttgctctccaacatataccgcaagatatccctttg 21607451  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 21634693 - 21634607
Alignment:
Q  38 acatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaac 124  Q
    |||||||| ||||||||||| ||||  || |||||  |||||||||||||||||||||| || ||||||   ||||| |||||||||    
T  21634693 acatcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaac 21634607  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 3073719 - 3073661
Alignment:
Q  38 acatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttc 96  Q
    |||||||| ||||||||||| ||||| |||||||| |||||||| ||||| ||||||||    
T  3073719 acatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttc 3073661  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 21477463 - 21477526
Alignment:
Q  137 aagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctt 201  Q
    ||||||||||||||||| |||||| | |||  ||||||||| ||||| |||||||||||||||||    
T  21477463 aagtatgatattgggat-acaaacggtgtcattttctctccaacatacactgcaacatagccctt 21477526  T

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