View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_high_8 (Length: 556)
Name: NF5290_high_8
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 15 - 538
Target Start/End: Original strand, 49907354 - 49907877
Alignment:
| Q |
15 |
cacagagcatttttcttttacaattgatgcaagagaatatttatttttgtggttggagaatatgattgttttattacatataaatatttttaagaggcgg |
114 |
Q |
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| T |
49907354 |
cacagagcatttttcttttacaattgatggaagagaatatttatttttgcggttggagaatatgattgttttattacatataaatatttttaagaggcgg |
49907453 |
T |
|
| Q |
115 |
attgttatatatctacttcagtttcttaaatataccctgtaacagaattcatctttctggttcactgattcagtatcactgcagttcagttttcctttac |
214 |
Q |
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| T |
49907454 |
attgttatatatctacttcagtttcttaaatataccctgtaacagaattcatctttctggttcactaattcagaatcattgcagttcagttttcctttac |
49907553 |
T |
|
| Q |
215 |
atattttgggtcctatccatcagtttccttaaatttaattcatgataggacattatgatctggtttgactcatgtagccgacccgacttagttgaaaaag |
314 |
Q |
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| T |
49907554 |
atattttgggtcctatccatcagtttccttaaacttaattcatgataggacattatgatctggtttgactcatgtagccgactcgacttagttgaaaaag |
49907653 |
T |
|
| Q |
315 |
gctttatctgttgtatctaagtaaggttttttatatagatatgtatgaattattacaaatttatagcattgagatgaacaaatgagtggaaataccttca |
414 |
Q |
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| T |
49907654 |
gctttatctgttgtatctaagtaaggttttttatatagatatgtatgaattattacaaatttatagcattgagatgaacaaatgagttgaaataccttca |
49907753 |
T |
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| Q |
415 |
ggtaacacgttttaaatgaagttgtactactcttcataaagaagttaagactgttgattgtttcttggaacttgaggatctgtccaggtccttgttgtcg |
514 |
Q |
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| T |
49907754 |
ggtaacacgttttaaatgaagttgtactactcttcataaagaagttaagactgttgattgtttcttggaacttgaggatctgtccaggtccttgttgtcg |
49907853 |
T |
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| Q |
515 |
ctgatactataatttgtgttaagt |
538 |
Q |
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| T |
49907854 |
ctgatactataatttgtgttaagt |
49907877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 143 - 284
Target Start/End: Complemental strand, 49561426 - 49561288
Alignment:
| Q |
143 |
aatataccctgtaacagaattcatctttctggttcactgattc-agtatcactgcagttcagttttcctttacatattttgggtcctatccatcagtttc |
241 |
Q |
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||||||||||| |||| ||||||||||||| ||||| ||||| ||||||| |||| |||| ||||||||| |||||||||| ||||||| | | || |
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| T |
49561426 |
aatataccctgcaacaaaattcatctttctagttcagtgattttagtatcaatgcaattcacttttccttttcatattttggttcctatc----actatc |
49561331 |
T |
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| Q |
242 |
cttaaatttaattcatgataggacattatgatctggtttgact |
284 |
Q |
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| T |
49561330 |
cttagactttattcatgataggacattatgatctggtttgact |
49561288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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