View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5290_high_9 (Length: 552)

Name: NF5290_high_9
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5290_high_9
NF5290_high_9
[»] chr6 (15 HSPs)
chr6 (1-365)||(2398030-2398395)
chr6 (367-514)||(2397619-2397768)
chr6 (275-391)||(6770828-6770946)
chr6 (267-414)||(32800176-32800325)
chr6 (268-374)||(20208007-20208113)
chr6 (268-374)||(22102030-22102136)
chr6 (275-361)||(28048742-28048828)
chr6 (272-389)||(10008190-10008307)
chr6 (281-354)||(2613359-2613432)
chr6 (316-385)||(22552229-22552298)
chr6 (270-389)||(9213040-9213160)
chr6 (333-397)||(16969637-16969701)
chr6 (275-388)||(5611130-5611244)
chr6 (268-354)||(31490385-31490471)
chr6 (275-343)||(17834977-17835045)
[»] chr5 (22 HSPs)
chr5 (269-392)||(6102823-6102946)
chr5 (284-388)||(16802026-16802130)
chr5 (275-382)||(12036309-12036416)
chr5 (248-414)||(14152445-14152613)
chr5 (279-378)||(20527011-20527111)
chr5 (266-345)||(35290679-35290758)
chr5 (252-389)||(3600108-3600246)
chr5 (270-392)||(6830262-6830385)
chr5 (274-342)||(2033499-2033567)
chr5 (270-388)||(15139166-15139281)
chr5 (284-414)||(39034461-39034592)
chr5 (275-392)||(30840599-30840716)
chr5 (295-364)||(5471101-5471170)
chr5 (275-354)||(2611149-2611229)
chr5 (275-355)||(30293824-30293904)
chr5 (269-339)||(29552373-29552443)
chr5 (267-321)||(35349387-35349441)
chr5 (297-354)||(5002920-5002977)
chr5 (240-343)||(9114930-9115032)
chr5 (267-328)||(35626647-35626708)
chr5 (307-388)||(28511182-28511265)
chr5 (245-316)||(34346953-34347025)
[»] scaffold0299 (1 HSPs)
scaffold0299 (263-391)||(18005-18135)
[»] chr2 (17 HSPs)
chr2 (245-414)||(1870464-1870634)
chr2 (269-387)||(34501589-34501707)
chr2 (245-360)||(33635540-33635655)
chr2 (270-388)||(13835835-13835953)
chr2 (269-364)||(5444487-5444582)
chr2 (298-395)||(43131783-43131881)
chr2 (270-342)||(29525652-29525724)
chr2 (240-384)||(40346710-40346856)
chr2 (275-390)||(23453340-23453457)
chr2 (272-396)||(27896453-27896578)
chr2 (268-373)||(13618193-13618290)
chr2 (266-354)||(38193671-38193759)
chr2 (275-388)||(13738396-13738510)
chr2 (268-318)||(30905411-30905461)
chr2 (266-355)||(18717882-18717971)
chr2 (275-391)||(40574144-40574261)
chr2 (274-354)||(4623730-4623810)
[»] chr7 (25 HSPs)
chr7 (245-391)||(24937827-24937974)
chr7 (245-389)||(8656291-8656439)
chr7 (267-392)||(39786445-39786571)
chr7 (276-389)||(47537423-47537536)
chr7 (270-361)||(40721412-40721504)
chr7 (275-389)||(21857601-21857715)
chr7 (240-355)||(12810112-12810228)
chr7 (284-342)||(25780245-25780303)
chr7 (269-331)||(27915189-27915251)
chr7 (245-386)||(37532524-37532668)
chr7 (269-345)||(1112147-1112223)
chr7 (266-390)||(30095316-30095441)
chr7 (307-386)||(32279688-32279767)
chr7 (298-361)||(46300699-46300762)
chr7 (269-354)||(22555738-22555823)
chr7 (299-354)||(44845840-44845894)
chr7 (298-391)||(16979937-16980031)
chr7 (275-345)||(19677037-19677107)
chr7 (248-341)||(39386951-39387045)
chr7 (269-322)||(28664542-28664595)
chr7 (275-343)||(47445357-47445425)
chr7 (273-343)||(5871239-5871308)
chr7 (272-354)||(11740359-11740441)
chr7 (268-345)||(8896592-8896669)
chr7 (298-355)||(34993152-34993209)
[»] chr3 (19 HSPs)
chr3 (267-414)||(34228251-34228398)
chr3 (270-383)||(48252267-48252380)
chr3 (267-345)||(41287876-41287954)
chr3 (267-388)||(4020096-4020218)
chr3 (297-389)||(45408692-45408784)
chr3 (336-395)||(28940566-28940624)
chr3 (269-338)||(19202180-19202249)
chr3 (245-391)||(635675-635823)
chr3 (284-386)||(2127363-2127461)
chr3 (275-388)||(29032410-29032524)
chr3 (275-354)||(44291231-44291310)
chr3 (267-337)||(25958052-25958122)
chr3 (266-343)||(1711916-1711993)
chr3 (272-345)||(4490822-4490894)
chr3 (288-389)||(8326135-8326236)
chr3 (338-391)||(19202398-19202451)
chr3 (284-345)||(23877728-23877789)
chr3 (281-354)||(35322042-35322113)
chr3 (275-390)||(15671118-15671233)
[»] chr8 (22 HSPs)
chr8 (269-390)||(18131188-18131309)
chr8 (269-367)||(40607318-40607416)
chr8 (275-391)||(10451893-10452011)
chr8 (267-339)||(12958923-12958995)
chr8 (269-365)||(4989717-4989813)
chr8 (270-345)||(27283333-27283407)
chr8 (269-374)||(13873709-13873815)
chr8 (272-354)||(20821923-20822005)
chr8 (270-374)||(15869007-15869111)
chr8 (267-343)||(34085199-34085275)
chr8 (245-391)||(11150918-11151065)
chr8 (275-391)||(20542382-20542499)
chr8 (274-345)||(33621408-33621479)
chr8 (285-392)||(34678218-34678325)
chr8 (269-375)||(44648933-44649040)
chr8 (248-345)||(18200654-18200752)
chr8 (245-316)||(10652500-10652572)
chr8 (316-392)||(30924208-30924284)
chr8 (235-345)||(3347471-3347582)
chr8 (267-354)||(12987634-12987721)
chr8 (270-388)||(35901412-35901531)
chr8 (245-316)||(10654867-10654939)
[»] chr4 (34 HSPs)
chr4 (269-414)||(16831096-16831241)
chr4 (245-391)||(2908181-2908328)
chr4 (245-390)||(53142777-53142924)
chr4 (275-388)||(55090779-55090892)
chr4 (246-376)||(28299261-28299392)
chr4 (295-383)||(19248892-19248980)
chr4 (270-345)||(45921335-45921410)
chr4 (269-414)||(9119213-9119359)
chr4 (269-354)||(51100021-51100106)
chr4 (284-391)||(5645657-5645764)
chr4 (270-361)||(4860143-4860234)
chr4 (285-389)||(37461778-37461881)
chr4 (295-354)||(32325057-32325116)
chr4 (281-374)||(50101287-50101381)
chr4 (275-343)||(14347124-14347191)
chr4 (270-389)||(20775069-20775189)
chr4 (281-374)||(37992868-37992958)
chr4 (268-391)||(34236175-34236299)
chr4 (269-343)||(40298015-40298089)
chr4 (302-354)||(32653879-32653931)
chr4 (275-353)||(32543983-32544060)
chr4 (302-348)||(32651953-32651999)
chr4 (241-388)||(48524493-48524640)
chr4 (269-330)||(31089511-31089572)
chr4 (270-392)||(22812064-22812187)
chr4 (267-354)||(31647754-31647841)
chr4 (268-353)||(21762093-21762176)
chr4 (270-344)||(22611893-22611967)
chr4 (275-414)||(30694258-30694395)
chr4 (275-375)||(12094969-12095070)
chr4 (336-389)||(35808568-35808621)
chr4 (244-305)||(28668388-28668451)
chr4 (298-354)||(41142318-41142374)
chr4 (270-345)||(48400920-48400996)
[»] chr1 (31 HSPs)
chr1 (245-372)||(27513-27641)
chr1 (269-361)||(31160752-31160844)
chr1 (269-374)||(34382628-34382733)
chr1 (290-361)||(28490665-28490736)
chr1 (269-340)||(39283717-39283788)
chr1 (269-343)||(11065862-11065936)
chr1 (275-388)||(13969100-13969214)
chr1 (295-361)||(45438985-45439051)
chr1 (270-391)||(50015771-50015893)
chr1 (275-360)||(48375268-48375353)
chr1 (270-364)||(41936164-41936262)
chr1 (299-382)||(17995194-17995277)
chr1 (245-334)||(35876802-35876892)
chr1 (309-345)||(27160335-27160371)
chr1 (298-397)||(46836188-46836288)
chr1 (307-354)||(27908952-27908999)
chr1 (270-355)||(10226458-10226543)
chr1 (270-355)||(11449092-11449177)
chr1 (269-345)||(8001742-8001818)
chr1 (248-315)||(40430884-40430952)
chr1 (268-374)||(33148125-33148232)
chr1 (270-352)||(52762298-52762383)
chr1 (275-388)||(26890070-26890183)
chr1 (270-343)||(9209273-9209346)
chr1 (322-394)||(33827873-33827945)
chr1 (322-394)||(33840020-33840092)
chr1 (307-391)||(38597475-38597560)
chr1 (275-340)||(47496864-47496928)
chr1 (266-354)||(30627607-30627695)
chr1 (275-343)||(35873495-35873563)
chr1 (269-384)||(46295866-46295982)
[»] scaffold0123 (1 HSPs)
scaffold0123 (275-414)||(17506-17646)
[»] scaffold0017 (1 HSPs)
scaffold0017 (307-388)||(31466-31547)
[»] scaffold0204 (1 HSPs)
scaffold0204 (246-329)||(15337-15421)
[»] scaffold0039 (1 HSPs)
scaffold0039 (267-345)||(29980-30058)
[»] scaffold0011 (1 HSPs)
scaffold0011 (270-343)||(12923-12996)
[»] scaffold0002 (1 HSPs)
scaffold0002 (269-337)||(120719-120787)


Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 2398395 - 2398030
Alignment:
Q  1 gataatttggttgtagtgcataagtgcaaatggcgtgtaagtaataaaaagcaaagtagtggtattggataattgcaagaatatgtgatttgatatgatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2398395 gataatttggttgtagtgcataagtgcaaatggcgtgtaagtaataaaaagcaaagtagtggtattggataattgcaagaatatgtgatttgatatgatg 2398296  T
Q  101 tatacaattcatgatcatatatataaaagaaaaagtgatgatgtatttatgaatgtgagttaatattggcttaattaggaaaataaata-ccgnnnnnnn 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |             
T  2398295 tatacaattcatgatcatatatataaaagaaaaagtgatgatgtatttatgaatgtgagttaatattggcttaattaggaaaataaatagctttgttttt 2398196  T
Q  200 nnnctccaatttgaagaaagagccaatgcaaagggagaaaaaagagtcttgctaaccggtgttctcagacaatgattaaggaatctataaataggaaatt 299  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  2398195 ttcctccaatttgaagaaagagccaatgcaaagggagaaaaaagagtcttgctaaccggtgttctcaggaaatgattaaggaatctataaatagaaaatt 2398096  T
Q  300 tgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagtta 365  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2398095 tatcttgaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagtta 2398030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 367 - 514
Target Start/End: Complemental strand, 2397768 - 2397619
Alignment:
Q  367 ttgttttggttacttaaccaatgcctcaaaggcactctttagcattctnnnnnnnngtagggttatttaaagtaatgtagttattttaagatgta--tat 464  Q
    |||||||||||||||||||||||| | || |||||||| |||||||||         ||||||||||||||||||||||||||||||||||||||  |||    
T  2397768 ttgttttggttacttaaccaatgctttaagggcactctctagcattctaaaaaaaattagggttatttaaagtaatgtagttattttaagatgtacatat 2397669  T
Q  465 ttataagtgggatcagtacggttagaatatgaaccattcttcaatgtttt 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2397668 ttataagtgggatcagtacggttagaatatgaaccattcttcaatgtttt 2397619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 275 - 391
Target Start/End: Complemental strand, 6770946 - 6770828
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcac--tttttctaaaaagttaattgttt 372  Q
    |||||||| |||||||||| |||||| |||| ||||||||| ||||||||||||||||| |||||||||||| ||  ||||| |||||||| | ||||||    
T  6770946 ttaaggaaactataaatagaaaatttatcttgaaaatataaattttgacttttgattaaataataattacataactttttttataaaaagtgacttgttt 6770847  T
Q  373 tggttacttaaccaatgcc 391  Q
    ||||| |||||||||||||    
T  6770846 tggttgcttaaccaatgcc 6770828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 267 - 414
Target Start/End: Complemental strand, 32800325 - 32800176
Alignment:
Q  267 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatca--ctttttctaaaaagtt 364  Q
    ||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| ||   ||||| |||||| ||    
T  32800325 gacaatggttaaggaaactataaatagaaaatttgtcttaaaaatataagttttgatttttgattaaataataattacaccattttttttataaaaaatt 32800226  T
Q  365 aattgttttggttacttaaccaatgcctcaaaggcactctttagcattct 414  Q
    | |  |||||||| |||||| ||||||   | |||||| |||||||||||    
T  32800225 actacttttggttgcttaacaaatgccctgagggcactgtttagcattct 32800176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 268 - 374
Target Start/End: Original strand, 20208007 - 20208113
Alignment:
Q  268 acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaat 367  Q
    |||||| |||| |||||||||||||  |||||||| || ||||||||||| |||||||||||||||||||||||||||| ||||||  ||||||| || |    
T  20208007 acaatggttaacgaatctataaatataaaatttgttttgaaaatataagtattgacttttgattaagtaataattacattacttttaataaaaagctact 20208106  T
Q  368 tgttttg 374  Q
    |||||||    
T  20208107 tgttttg 20208113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 268 - 374
Target Start/End: Original strand, 22102030 - 22102136
Alignment:
Q  268 acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaat 367  Q
    |||||| |||| |||||||||||||  |||||||| || ||||||||||| |||||||||||||||||||||||||||| ||||||  ||||||| || |    
T  22102030 acaatggttaacgaatctataaatataaaatttgttttgaaaatataagtattgacttttgattaagtaataattacattacttttaataaaaagctact 22102129  T
Q  368 tgttttg 374  Q
    |||||||    
T  22102130 tgttttg 22102136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 28048742 - 28048828
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaa 361  Q
    ||||||||  ||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||    
T  28048742 ttaaggaaattataaatagaaaatttgttttaaaaatataagttttgacttttaattaagtaataattacaccactttttataaaaa 28048828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 389
Target Start/End: Complemental strand, 10008307 - 10008190
Alignment:
Q  272 tgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt-ctaaaaagttaattgt 370  Q
    ||||||||||||||| ||| || || ||||||||||||||||||    | ||||||||| |||||||||||||| ||||||||  |||||| ||| || |    
T  10008307 tgattaaggaatctaaaaa-agaaattttgtcttaaaaatataaacggttacttttgatcaagtaataattacaccactttttaataaaaacttacttct 10008209  T
Q  371 tttggttacttaaccaatg 389  Q
    ||||||| |||||||||||    
T  10008208 tttggttgcttaaccaatg 10008190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 354
Target Start/End: Original strand, 2613359 - 2613432
Alignment:
Q  281 aatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    |||| |||||||| || |||||||||||||||||||||   ||||||||| ||||||||||| |||||| ||||    
T  2613359 aatccataaatagaaattttgtcttaaaaatataagttgctacttttgatcaagtaataatttcatcacatttt 2613432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 385
Target Start/End: Complemental strand, 22552298 - 22552229
Alignment:
Q  316 gttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaacc 385  Q
    ||||| |||||| |||||||||||||||||| ||||||| |||||| ||| ||||||| || ||||||||    
T  22552298 gttttaacttttaattaagtaataattacataactttttataaaaatttacttgttttagtgacttaacc 22552229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 389
Target Start/End: Original strand, 9213040 - 9213160
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagtta---a 366  Q
    |||| ||||| || |||||||||  ||||||||||| ||||| || |||| || ||||||| ||||||||||||||  ||||||| ||||||||||        
T  9213040 aatggttaagaaaactataaataaaaaatttgtcttgaaaat-tatgttt-gatttttgatcaagtaataattacactactttttataaaaagttactgc 9213137  T
Q  367 ttgttttggttacttaaccaatg 389  Q
    ||||||||||| |||||||||||    
T  9213138 ttgttttggtttcttaaccaatg 9213160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 16969637 - 16969701
Alignment:
Q  333 agtaataattacatcactttttctaaaaagttaattgttttggttacttaaccaatgcctcaaag 397  Q
    ||||||||||||||||||||||   |||||||| ||||||||||| |||||  ||||||||||||    
T  16969637 agtaataattacatcacttttttataaaagttatttgttttggttgcttaaataatgcctcaaag 16969701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 388
Target Start/End: Original strand, 5611130 - 5611244
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaattgtttt 373  Q
    ||||||||||||||||||| || ||||||||| ||||||||| | | |||||| || || ||||||||| |  |||| ||| |||||| ||| |||||||    
T  5611130 ttaaggaatctataaatagaaattttgtcttagaaatataagatgttacttttaatcaaataataattatacaacttattcataaaaacttacttgtttt 5611229  T
Q  374 ggttacttaaccaat 388  Q
    || |  |||||||||    
T  5611230 ggatgtttaaccaat 5611244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 31490471 - 31490385
Alignment:
Q  268 acaatgattaaggaatctataaataggaaatttg-tcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    ||||||||||||||||| || ||||| || |||| |||| |||||||||||||| |||||||  ||| ||||||||||| || |||||    
T  31490471 acaatgattaaggaatccattaatag-aattttgatcttgaaaatataagtttttacttttgtctaattaataattacaccatttttt 31490385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 17834977 - 17835045
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    ||||||| |||| |||||| ||  |||||||  ||||||||| | | ||||||||||||||||||||||    
T  17834977 ttaaggattctacaaatagcaatattgtctttgaaatataagatattacttttgattaagtaataatta 17835045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 269 - 392
Target Start/End: Complemental strand, 6102946 - 6102823
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaatt 368  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||  |||||||||| ||    
T  6102946 caatggttaaggaatctataaatagaaaatttgtcttcaaaatataagttttgacttttgattaagtaataattacaatacttttaataaaaagttactt 6102847  T
Q  369 gttttggttacttaaccaatgcct 392  Q
     |||||||| ||||||||||||||    
T  6102846 attttggttgcttaaccaatgcct 6102823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 284 - 388
Target Start/End: Complemental strand, 16802130 - 16802026
Alignment:
Q  284 ctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaa 383  Q
    |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||| |||||    
T  16802130 ctataaatagaaaatttgtcttgaaaatataaattttgacttttgattaagtaataattacattactttttataaaaagttatttgttttggttgcttaa 16802031  T
Q  384 ccaat 388  Q
    |||||    
T  16802030 ccaat 16802026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 275 - 382
Target Start/End: Original strand, 12036309 - 12036416
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttg 374  Q
    |||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||| || |||||    
T  12036309 ttaaggaacctataaatagaaaatttgtcttgaaaatataagttttgacttttgattaagtaataattacattacttttaataaaaagttatttattttg 12036408  T
Q  375 gttactta 382  Q
    ||||||||    
T  12036409 gttactta 12036416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 248 - 414
Target Start/End: Original strand, 14152445 - 14152613
Alignment:
Q  248 ttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacat 346  Q
    ||||||||||||| ||||| ||||||| ||||| ||  ||||||||| |||||| |||||||| || |||||| || |||| || ||||||||||||||     
T  14152445 ttgctaaccggtgatctcatgacaatggttaagaaaattataaatagaaaatttatcttaaaattaaaagtttagattttttatgaagtaataattacac 14152544  T
Q  347 cactttttct-aaaaagttaattgttttggttacttaaccaatgcctcaaaggcactctttagcattct 414  Q
    |||||||| | ||||||||| |||||||||||||||||||||| ||   |||||| | |||||||||||    
T  14152545 cactttttataaaaaagttacttgttttggttacttaaccaatacccttaaggcattgtttagcattct 14152613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 279 - 378
Target Start/End: Original strand, 20527011 - 20527111
Alignment:
Q  279 ggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaa-gtaataattacatcactttttctaaaaagttaattgttttggtt 377  Q
    |||||||||||||||  |||||||| | |||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  20527011 ggaatctataaatagataatttgtcatgaaaatagaagttttgatttttaattaaagtaataattacatcactttttctaaaaagttacttgttttggtt 20527110  T
Q  378 a 378  Q
    |    
T  20527111 a 20527111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 35290758 - 35290679
Alignment:
Q  266 agacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 345  Q
    |||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  35290758 agacaatgattaagtaatctataattagaaaatttgtcttaaaaatatatgttttgacttttgattaagtaatatttaca 35290679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 252 - 389
Target Start/End: Complemental strand, 3600246 - 3600108
Alignment:
Q  252 taaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcact 350  Q
    ||||||||| ||||||  ||||| ||||| || |||||||||  | ||||||||| |||||||||||||||| |||| |||||||||||||||||| |||    
T  3600246 taaccggtgctctcagggcaatggttaagaaaactataaataaaatatttgtcttgaaaatataagttttgaattttaattaagtaataattacattact 3600147  T
Q  351 ttttctaaaaagttaattgttttggttacttaaccaatg 389  Q
    |||| |||||||||  || |||||||| ||||| |||||    
T  3600146 ttttataaaaagttttttattttggttgcttaatcaatg 3600108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 270 - 392
Target Start/End: Complemental strand, 6830385 - 6830262
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttct-aaaaagttaatt 368  Q
    |||| ||||||||| ||||||||| |||| |||||| |||||||||||| |||  ||||||| | |||||||||||  ||||||  | ||||| ||| ||    
T  6830385 aatggttaaggaatttataaatagaaaatgtgtcttgaaaatataagttctgaaatttgattcaataataattacactacttttaataaaaaaattactt 6830286  T
Q  369 gttttggttacttaaccaatgcct 392  Q
    ||||||||| ||||||||||||||    
T  6830285 gttttggttgcttaaccaatgcct 6830262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 2033567 - 2033499
Alignment:
Q  274 attaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatt 342  Q
    ||||||||| |||||||||  ||||||   |||||||||||||||||||||||||||||||||||||||    
T  2033567 attaaggaaactataaataaaaaatttaggttaaaaatataagttttgacttttgattaagtaataatt 2033499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 388
Target Start/End: Original strand, 15139166 - 15139281
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattg 369  Q
    |||| |||||||| |||||||||  ||||||||||| |||||||||| ||||| |||||||||||   ||||||||  ||||||| |||||| ||| ||     
T  15139166 aatggttaaggaaactataaataaaaaatttgtcttgaaaatataagatttgatttttgattaag---taattacactactttttataaaaaattactta 15139262  T
Q  370 ttttggttacttaaccaat 388  Q
    ||||| || ||||||||||    
T  15139263 ttttgattgcttaaccaat 15139281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 284 - 414
Target Start/End: Original strand, 39034461 - 39034592
Alignment:
Q  284 ctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttct-aaaaagttaattgttttggttactta 382  Q
    |||| ||||| ||||  ||||| |||||||||||||||||||||||||||||||||||||||  |  |||| | |||||  | |||||||||||| || |    
T  39034461 ctattaatagaaaataggtcttgaaaatataagttttgacttttgattaagtaataattacactatattttataaaaaaaattattgttttggttgctaa 39034560  T
Q  383 accaatgcctcaaaggcactctttagcattct 414  Q
    |||||||||   | |||||| |||||||||||    
T  39034561 accaatgccctcagggcactgtttagcattct 39034592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 392
Target Start/End: Original strand, 30840599 - 30840716
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttg 374  Q
    ||||||||||||  || || ||||||||||| |||||||||| | | ||||||||| ||||||| ||||||  ||||||| | |||| ||| ||||||||    
T  30840599 ttaaggaatctactaacagaaaatttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaactttttttgaaaacttacttgttttg 30840698  T
Q  375 gttacttaaccaatgcct 392  Q
    | | ||||| ||||||||    
T  30840699 gatgcttaatcaatgcct 30840716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 364
Target Start/End: Complemental strand, 5471170 - 5471101
Alignment:
Q  295 aaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagtt 364  Q
    |||||||||||  ||||||| |||||||||||||||||| ||||||| |||| | ||||| |||||||||    
T  5471170 aaatttgtcttggaaatatatgttttgacttttgattaaataataataacattattttttataaaaagtt 5471101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 2611149 - 2611229
Alignment:
Q  275 ttaaggaatctataaataggaaatt-tgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    ||||||||||||||||||| || || ||||||  ||||||||| | | |||||| |||||||||||||||||| |||||||    
T  2611149 ttaaggaatctataaatagaaatttatgtcttggaaatataagctgtcactttttattaagtaataattacattacttttt 2611229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 30293824 - 30293904
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc 355  Q
    |||| ||||||| |||||| || ||||||||||||||||||| | | ||||||||| ||||||| ||||||| | ||||||    
T  30293824 ttaaagaatctacaaatagaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattacataattttttc 30293904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 29552443 - 29552373
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaata 339  Q
    ||||| |||||||| |||||||||| |||||||| |   |||||||| ||||||| |||||||||||||||    
T  29552443 caatggttaaggaaactataaatagaaaatttgtttcgtaaatataaattttgacatttgattaagtaata 29552373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 35349387 - 35349441
Alignment:
Q  267 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttg 321  Q
    |||||||||||| |||||||||||||| |||||| | || |||||||||||||||    
T  35349387 gacaatgattaaagaatctataaatagaaaatttattttgaaaatataagttttg 35349441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 5002977 - 5002920
Alignment:
Q  297 atttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||| ||||  |||||||    
T  5002977 atttgtcttgaaaataaaagttttaacttttgattaagtaataactacacaacttttt 5002920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 343
Target Start/End: Complemental strand, 9115032 - 9114930
Alignment:
Q  240 aaagagtcttgctaaccggtgttctcag-acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaat 338  Q
    |||| ||||||||||||| ||  ||||| |||||||||||| ||  |||||  || |||||| |||| ||||||||| |||| | |||| ||||||||||    
T  9115032 aaagtgtcttgctaaccgatg--ctcaggacaatgattaagaaaattataagaagaaaatttatcttgaaaatataaattttaattttttattaagtaat 9114935  T
Q  339 aatta 343  Q
    |||||    
T  9114934 aatta 9114930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 35626708 - 35626647
Alignment:
Q  267 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttg 328  Q
    ||||||| |||||||||| || ||||| || ||||| || |||||||||||||| |||||||    
T  35626708 gacaatggttaaggaatccattaatagaaattttgttttgaaaatataagtttttacttttg 35626647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 388
Target Start/End: Original strand, 28511182 - 28511265
Alignment:
Q  307 aaaatataagttttgacttttgattaagtaataattacatcac--tttttctaaaaagttaattgttttggttacttaaccaat 388  Q
    ||||| |||||||| ||||||||| || |||||||||||  ||  ||||| |||||| |||  |||||||||| ||||||||||    
T  28511182 aaaatgtaagtttttacttttgatgaattaataattacactactttttttataaaaacttacatgttttggttgcttaaccaat 28511265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 34347025 - 34346953
Alignment:
Q  245 gtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataag 316  Q
    ||||| |||||| |||| |||| | ||||| |||||||||||| |||||  ||||||||||| ||||||||||    
T  34347025 gtcttactaaccagtgtcctcatagcaatggttaaggaatctacaaataaaaaatttgtcttgaaaatataag 34346953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 263 - 391
Target Start/End: Original strand, 18005 - 18135
Alignment:
Q  263 ctcagacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcac--tttttctaaaa 360  Q
    |||||||| || |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||  ||  ||||| |||||    
T  18005 ctcagacattggttaaggaaactataaatagaaaatttatcttaaaaatataagttttgacttttgattaagtaataattacacaactttttttataaaa 18104  T
Q  361 agttaattgttttggttacttaaccaatgcc 391  Q
    ||||| ||||||||||| |||||||||||||    
T  18105 agttacttgttttggttgcttaaccaatgcc 18135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 245 - 414
Target Start/End: Original strand, 1870464 - 1870634
Alignment:
Q  245 gtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    |||||||||||| |||  |||||  ||||| |||||||| |||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  1870464 gtcttgctaaccagtgccctcagggcaatggttaaggaaactataaatagaaaatttgtcttgaaaatataagctttgacttttgattaagtaataatta 1870563  T
Q  344 catcactttttctaaaaagttaattgttttggttacttaaccaatgcctcaaaggcactctttagcattct 414  Q
    ||    ||||| |||||||||| ||||||| ||| ||||||||||||| | | |||||| |||||||||||    
T  1870564 cacatttttttataaaaagttacttgtttttgttgcttaaccaatgccccgagggcactgtttagcattct 1870634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 269 - 387
Target Start/End: Original strand, 34501589 - 34501707
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaatt 368  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||| |||||| |||| |||||||||||||||||  | ||||| |||||||||| ||    
T  34501589 caatgattaaggaatctataaataaaaaagttgtcttaaaaatataatttttgattttttattaagtaataattacacaattttttataaaaagttattt 34501688  T
Q  369 gttttggttacttaaccaa 387  Q
    | ||||||| |||||||||    
T  34501689 gatttggttgcttaaccaa 34501707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 245 - 360
Target Start/End: Complemental strand, 33635655 - 33635540
Alignment:
Q  245 gtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    ||||||||||||||||  |||||| ||||| ||| ||||| |||||||   ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  33635655 gtcttgctaaccggtgccctcagagcaatgttta-ggaatttataaatgaaaaatttgtcttgaaaatataaattttgacttttgattaagtaataatta 33635557  T
Q  344 catcactttttctaaaa 360  Q
    ||||||||||| |||||    
T  33635556 catcactttttataaaa 33635540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 388
Target Start/End: Complemental strand, 13835953 - 13835835
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattg 369  Q
    |||| ||||| || |||||||||| |||| |||||| ||||||||||||||||||||| |||||||||||||||||  | ||||| |||||| ||| ||     
T  13835953 aatggttaagaaaactataaatagaaaatctgtcttgaaaatataagttttgactttttattaagtaataattacactattttttataaaaaattattta 13835854  T
Q  370 ttttggttacttaaccaat 388  Q
    ||||| || ||||||||||    
T  13835853 ttttgcttgcttaaccaat 13835835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 5444487 - 5444582
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagtt 364  Q
    |||||||||| ||| |||||||||  || |||||||| ||||||||||||||||||||| |||||||||||| ||||  ||||||| ||| |||||    
T  5444487 caatgattaaagaaactataaataaaaattttgtcttgaaaatataagttttgacttttaattaagtaataaatacacaactttttataataagtt 5444582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 395
Target Start/End: Original strand, 43131783 - 43131881
Alignment:
Q  298 tttgtcttaaaaatataagttttgacttttgattaagtaataattaca-tcactttttctaaaaagttaattgttttggttacttaaccaatgcctcaa 395  Q
    |||||||||||||| |||||||  ||||||||| |||||||||||||| |  |||||| |||||| ||| |||||||||||  |||| |||||||||||    
T  43131783 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaatcaatgcctcaa 43131881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 29525724 - 29525652
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatt 342  Q
    |||| ||||| ||||||||||||  || ||| ||| |||||||||| ||||||||||||||||||||||||||    
T  29525724 aatggttaagaaatctataaataaaaattttatctcaaaaatataaattttgacttttgattaagtaataatt 29525652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 240 - 384
Target Start/End: Complemental strand, 40346856 - 40346710
Alignment:
Q  240 aaagagtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaat 338  Q
    ||||||||||||||||||||| |||||||  |||| |||||||||||| | |||| || ||||| || |||||||||| | | | ||||||| || ||||    
T  40346856 aaagagtcttgctaaccggtgctctcagagtaatggttaaggaatctacatatagaaattttgtattgaaaatataagatgttatttttgatcaaataat 40346757  T
Q  339 aattacatcactttttc-taaaaagttaattgttttggttacttaac 384  Q
     ||| ||  |||||||| |||||| ||| || |||||| ||||||||    
T  40346756 gattgcacaactttttcataaaaacttacttattttggatacttaac 40346710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 390
Target Start/End: Complemental strand, 23453457 - 23453340
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc--taaaaagttaattgttt 372  Q
    |||||||||||| |||||  || |||||||| |||||||||| | | ||||||||| || |||  ||||||  ||||||||  |||||| ||  ||||||    
T  23453457 ttaaggaatctacaaataaaaattttgtcttgaaaatataagatgttacttttgatcaaataaagattacacaactttttccataaaaacttgcttgttt 23453358  T
Q  373 tggttacttaaccaatgc 390  Q
    ||| ||||||||||||||    
T  23453357 tggatacttaaccaatgc 23453340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 272 - 396
Target Start/End: Complemental strand, 27896578 - 27896453
Alignment:
Q  272 tgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt-ctaaaaagttaattgt 370  Q
    ||||||||| ||| |  ||||| |||||||| ||| ||||||||| | | |||||||||| |||||||||||||  |||||||  | |||| ||| || |    
T  27896578 tgattaaggtatccaagaatagaaaatttgttttagaaatataagctgttacttttgatttagtaataattacacaactttttaattaaaacttacttat 27896479  T
Q  371 tttggttacttaaccaatgcctcaaa 396  Q
    |||||||  ||||||| |||||||||    
T  27896478 tttggttgtttaaccactgcctcaaa 27896453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 373
Target Start/End: Complemental strand, 13618290 - 13618193
Alignment:
Q  268 acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaat 367  Q
    |||||| ||||| ||  ||||||||  ||| |||||||||||||||||||||||||| |||        ||||||||| |||||||| |||||||||| |    
T  13618290 acaatggttaagaaaattataaatataaaaattgtcttaaaaatataagttttgactcttg--------ataattacaccactttttataaaaagttatt 13618199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 354
Target Start/End: Original strand, 38193671 - 38193759
Alignment:
Q  266 agacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    ||||| |||||||||||||| | ||||| || ||| | |||||||| |||||||| | ||||||| || |||||||||||  |||||||    
T  38193671 agacattgattaaggaatcttttaatagaaattttattttaaaaatgtaagtttttatttttgatgaaataataattacactacttttt 38193759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 388
Target Start/End: Original strand, 13738396 - 13738510
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatca-ctttttctaaaaagttaattgtttt 373  Q
    ||||||||||||||||||  || ||||| || |||||||||| | | |||| |||| ||||||| ||||||  |  ||||| |||||| ||| |||||||    
T  13738396 ttaaggaatctataaataaaaattttgttttgaaaatataagatgttacttctgataaagtaatgattacacaatttttttataaaaacttacttgtttt 13738495  T
Q  374 ggttacttaaccaat 388  Q
    || | ||||||||||    
T  13738496 ggatgcttaaccaat 13738510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 30905461 - 30905411
Alignment:
Q  268 acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagtt 318  Q
    |||||| ||||||||  ||||||||| || |||||||||||||||||||||    
T  30905461 acaatggttaaggaaattataaatagcaactttgtcttaaaaatataagtt 30905411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 355
Target Start/End: Complemental strand, 18717971 - 18717882
Alignment:
Q  266 agacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc 355  Q
    ||||| || ||||||||| || |||||| || ||| | ||||||||||||| | | ||||||||| ||||||| ||||||  ||||||||    
T  18717971 agacattggttaaggaatttacaaatagaaattttattttaaaaatataagatgttacttttgatcaagtaatgattacacaactttttc 18717882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 391
Target Start/End: Original strand, 40574144 - 40574261
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaattgtttt 373  Q
    |||||||||||| |||||| || ||||||||  ||||||||  | | |||||||||  |||||||||||||  |||||||| | ||||  || |||||||    
T  40574144 ttaaggaatctacaaatagaaattttgtcttggaaatataaaatgtaacttttgatagagtaataattacacaactttttcatgaaaatgtacttgtttt 40574243  T
Q  374 ggttacttaaccaatgcc 391  Q
    || | |||||||| ||||    
T  40574244 ggatgcttaaccattgcc 40574261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 354
Target Start/End: Original strand, 4623730 - 4623810
Alignment:
Q  274 attaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    ||||| |||||||||||||  |||||||| |||||| |||||||| | |||||| |  || ||||||||||| || |||||    
T  4623730 attaaagaatctataaataaaaaatttgtgttaaaattataagttgttacttttaaccaactaataattacaccaattttt 4623810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 245 - 391
Target Start/End: Complemental strand, 24937974 - 24937827
Alignment:
Q  245 gtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    |||||||||||| |||  |||||  ||||| |||||||| |||||||||| |||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  24937974 gtcttgctaaccagtgccctcagggcaatggttaaggaaactataaatagaaaatttgttttaaaaatatagattttgacttttaattaagtaataatta 24937875  T
Q  344 catcactttttctaaaaagttaattgttttggttacttaaccaatgcc 391  Q
    || |||||||| |||||||||| || |||||||| |||||||||||||    
T  24937874 caccactttttataaaaagttacttattttggttccttaaccaatgcc 24937827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 245 - 389
Target Start/End: Complemental strand, 8656439 - 8656291
Alignment:
Q  245 gtcttgctaaccggtgttctca--gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatt 342  Q
    |||||||||||| |||||||||  ||||||| |||||||| |||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||    
T  8656439 gtcttgctaaccagtgttctcaaagacaatggttaaggaaactataaatagaaaatttgtcttaaaaaaataagttttaacttttgattaagtaataatt 8656340  T
Q  343 acatcacttttt--ctaaaaagttaattgttttggttacttaaccaatg 389  Q
    | | ||||||||    ||||||| | ||||||||||| |||||||||||    
T  8656339 ataccacttttttataaaaaagtcacttgttttggttgcttaaccaatg 8656291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 267 - 392
Target Start/End: Original strand, 39786445 - 39786571
Alignment:
Q  267 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttct-aaaaagtta 365  Q
    ||||||| ||||||||||||||||||| ||| ||||||| |||||||||||||| |||||||||||| |||||||||||  ||||||  | |||||||||    
T  39786445 gacaatggttaaggaatctataaatagaaaacttgtcttgaaaatataagttttaacttttgattaaataataattacactacttttaataaaaaagtta 39786544  T
Q  366 attgttttggttacttaaccaatgcct 392  Q
     ||||||||||| ||||||||||||||    
T  39786545 tttgttttggttgcttaaccaatgcct 39786571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 276 - 389
Target Start/End: Complemental strand, 47537536 - 47537423
Alignment:
Q  276 taaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttgg 375  Q
    ||||||| ||||||||   ||||||||||| |||||||||||||||| ||||||||||||||||||||||  ||||||| ||||||||||  |||||| |    
T  47537536 taaggaaactataaatgaaaaatttgtcttgaaaatataagttttgatttttgattaagtaataattacacaactttttataaaaagttacctgttttag 47537437  T
Q  376 ttacttaaccaatg 389  Q
    || |||||| ||||    
T  47537436 ttgcttaactaatg 47537423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 40721504 - 40721412
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgac-ttttgattaagtaataattacatcactttttctaaaaa 361  Q
    ||||||||| |||| ||||||||| ||||||||| |||||||||||||||| || ||||||||||||| |||||||| || ||||| ||||||    
T  40721504 aatgattaaagaatttataaatagaaaatttgtcataaaaatataagttttaactttttgattaagtagtaattacaccattttttataaaaa 40721412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 389
Target Start/End: Original strand, 21857601 - 21857715
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttg 374  Q
    |||| |||| ||||||||| |||||||||||  |||||||||||||||  |||| |||| |||||||||||  ||||||  |||||||||| || ||||     
T  21857601 ttaaagaatttataaatagaaaatttgtcttgtaaatataagttttgatatttggttaattaataattacactacttttaataaaaagttacttattttt 21857700  T
Q  375 gttacttaaccaatg 389  Q
    |||||||||| ||||    
T  21857701 gttacttaactaatg 21857715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 355
Target Start/End: Original strand, 12810112 - 12810228
Alignment:
Q  240 aaagagtcttgctaaccggtgttctcagacaa-tgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaat 338  Q
    |||| ||||||||||||| ||| |||||| || ||||||| ||||||||||||   || ||||||||||||||||||| | | ||||||||  |||||||    
T  12810112 aaagggtcttgctaaccgatgtcctcagagaaatgattaatgaatctataaatgaaaattttgtcttaaaaatataagatattacttttgacaaagtaat 12810211  T
Q  339 aattacatcactttttc 355  Q
    |||||||  ||||||||    
T  12810212 aattacacaactttttc 12810228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 25780303 - 25780245
Alignment:
Q  284 ctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatt 342  Q
    |||||||||  |||||||||| |||||||||||||||||||||| ||||||||||||||    
T  25780303 ctataaataaaaaatttgtctgaaaaatataagttttgacttttaattaagtaataatt 25780245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 331
Target Start/End: Original strand, 27915189 - 27915251
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgatt 331  Q
    ||||||||||||||  |||| |||| |||||||| ||||||||||||||||||||||||||||    
T  27915189 caatgattaaggaaattatatatagaaaatttgtgttaaaaatataagttttgacttttgatt 27915251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 386
Target Start/End: Original strand, 37532524 - 37532668
Alignment:
Q  245 gtcttgctaaccggtgttctcagacaa-tgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    |||||||||||| ||| ||||||  || || |||||||| |||||| ||  |||||| | |||||||||||| ||| |||||||||||||| ||||||||    
T  37532524 gtcttgctaaccagtgctctcagggaagtggttaaggaaactataagtataaaatttatattaaaaatataaatttcgacttttgattaagaaataatta 37532623  T
Q  344 catcacttttt--ctaaaaagttaattgttttggttacttaacca 386  Q
    || || |||||    ||||||||| |||||| |||| ||||||||    
T  37532624 caccatttttttataaaaaagttacttgtttcggttgcttaacca 37532668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 345
Target Start/End: Original strand, 1112147 - 1112223
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 345  Q
    |||||||| ||||| |||||||||| |||||||| || ||| ||||| ||||||||||| || ||||||||||||||    
T  1112147 caatgattgaggaaactataaatagaaaatttgttttgaaattataaattttgacttttaatgaagtaataattaca 1112223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 390
Target Start/End: Complemental strand, 30095441 - 30095316
Alignment:
Q  266 agacaatgattaaggaatctataaataggaaatttgtctt--aaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagt 363  Q
    |||||||||||||| |||||| |||||| ||||| |||||  ||| ||||||||||| |||||||||| ||||||| ||||| ||  |||| | |||| |    
T  30095441 agacaatgattaagaaatctacaaatagaaaattagtcttgaaaatatataagttttaacttttgatttagtaatagttacaccatcttttattaaaa-t 30095343  T
Q  364 taattgttttggttacttaaccaatgc 390  Q
    || |||||||| ||  |||||||||||    
T  30095342 tacttgttttgcttgtttaaccaatgc 30095316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 386
Target Start/End: Original strand, 32279688 - 32279767
Alignment:
Q  307 aaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaacca 386  Q
    ||||||||||| |||| |||| |||||||||||||||||| | ||||  ||||||||| |||||||| ||| ||||||||    
T  32279688 aaaatataagtgttgattttttattaagtaataattacattatttttaataaaaagttgattgttttagttgcttaacca 32279767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 46300762 - 46300699
Alignment:
Q  298 tttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaa 361  Q
    |||||||| |||||||| |||||||||||| || | ||||||||||||||||||||| ||||||    
T  46300762 tttgtcttgaaaatatatgttttgactttttatcatgtaataattacatcactttttataaaaa 46300699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 354
Target Start/End: Complemental strand, 22555823 - 22555738
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    ||||| |||| ||||  |||||||| || ||| |||| |||||||||||||||| ||||||| |||||||||||||| || |||||    
T  22555823 caatggttaaagaattcataaatagaaattttatctttaaaatataagttttgatttttgatcaagtaataattacaacatttttt 22555738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 44845894 - 44845840
Alignment:
Q  299 ttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    ||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||||    
T  44845894 ttgtcttaaaaatataaattttgacttttgattaggtaat-attatatcacttttt 44845840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 391
Target Start/End: Complemental strand, 16980031 - 16979937
Alignment:
Q  298 tttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaattgttttggttacttaaccaatgcc 391  Q
    |||||||| |||||||||| | | |||||||||  ||||||||| |||  |||||||| |||||| ||| ||||||||| | |||||||||||||    
T  16980031 tttgtcttgaaaatataagatgttacttttgatcgagtaataatcacacaactttttcataaaaatttacttgttttggatgcttaaccaatgcc 16979937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 19677107 - 19677037
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 345  Q
    |||||||||| | |||||| || |||||||| |||||||||| | | ||||||||||||||||| ||||||    
T  19677107 ttaaggaatcgacaaatagaaattttgtcttgaaaatataagatgttacttttgattaagtaatgattaca 19677037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 39387045 - 39386951
Alignment:
Q  248 ttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataat 341  Q
    ||||||||||||| ||||| |  |||| |||| ||| |||||||||  |||||| || ||||||||||| |||| ||||||||| ||||||||||    
T  39387045 ttgctaaccggtgctctcaaggtaatggttaaagaaactataaataaaaaatttatcctaaaaatataaattttaacttttgatcaagtaataat 39386951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 28664542 - 28664595
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttga 322  Q
    ||||| ||||||||||||||||||| |||||||| || |||||||| |||||||    
T  28664542 caatggttaaggaatctataaatagaaaatttgtattgaaaatatacgttttga 28664595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 47445357 - 47445425
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    ||||||||||  ||||||| || ||||  || |||||||||||||| ||||||||| ||||||||||||    
T  47445357 ttaaggaatccttaaatagaaattttgctttgaaaatataagtttttacttttgatgaagtaataatta 47445425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 343
Target Start/End: Complemental strand, 5871308 - 5871239
Alignment:
Q  273 gattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    |||||||||||||||||||| ||||||||  || |||||||||||| | || ||| || ||||||||||||    
T  5871308 gattaaggaatctataaata-gaaatttggtttcaaaatataagttgttacgtttaatcaagtaataatta 5871239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 11740359 - 11740441
Alignment:
Q  272 tgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    |||||||||||||||  ||||| ||| ||||||| |||||||||  | | ||||||||| || |||| |||||| ||||||||    
T  11740359 tgattaaggaatctaataatagaaaaattgtcttgaaaatataaactgttacttttgatcaactaattattacaccacttttt 11740441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 8896592 - 8896669
Alignment:
Q  268 acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 345  Q
    |||||| |||| ||||||| |||||  || ||||||||||||||||||| | | ||||||||| | ||||| ||||||    
T  8896592 acaatgtttaaagaatctacaaatataaattttgtcttaaaaatataagatgttacttttgatcaggtaatgattaca 8896669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 34993152 - 34993209
Alignment:
Q  298 tttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc 355  Q
    ||||||||||||||||||| | | ||||||||| || |||||||||||  ||||||||    
T  34993152 tttgtcttaaaaatataagatgttacttttgataaaataataattacacaactttttc 34993209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 267 - 414
Target Start/End: Original strand, 34228251 - 34228398
Alignment:
Q  267 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaa 366  Q
    ||||||| |||||||| |||||||||  ||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||     
T  34228251 gacaatggttaaggaaactataaataaaaaatttgtcttaaaaatataaattttgacttttgattaaataataatttcatcactttttataaaaagttac 34228350  T
Q  367 ttgttttggttacttaaccaatgcctcaaaggcactctttagcattct 414  Q
    | |||||  || |||||||||| ||| || |||||| ||| |||||||    
T  34228351 tcgttttaattgcttaaccaataccttaagggcactgtttggcattct 34228398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 270 - 383
Target Start/End: Original strand, 48252267 - 48252380
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattg 369  Q
    |||| ||||||||||||||||||  |||||| |||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||  ||    
T  48252267 aatggttaaggaatctataaataaaaaatttatcttgaaaatataagttttgacttttgagtaaataataatgacatcactttttctaaaaagttacgtg 48252366  T
Q  370 ttttggttacttaa 383  Q
    ||||| ||||||||    
T  48252367 ttttgattacttaa 48252380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 267 - 345
Target Start/End: Original strand, 41287876 - 41287954
Alignment:
Q  267 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 345  Q
    |||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  41287876 gacaatgattaaggaaactataaatagaaaatttgttttaaaaatataagttttgatttttgattaagtaataattaca 41287954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 267 - 388
Target Start/End: Complemental strand, 4020218 - 4020096
Alignment:
Q  267 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagtta 365  Q
    ||||||| |||||||||||| |||||| || |||||||| |||||||||  | | | ||||||||||||||| ||||||  | |||||| |||||| |||    
T  4020218 gacaatggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttaattttgattaagtaattattacacaattttttcataaaaactta 4020119  T
Q  366 attgttttggttacttaaccaat 388  Q
     ||||||||||||||||||||||    
T  4020118 cttgttttggttacttaaccaat 4020096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 45408692 - 45408784
Alignment:
Q  297 atttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaa-gttaattgttttggttacttaaccaatg 389  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||||| || ||||| |||||| |||| ||||||| |||  ||||||||||    
T  45408692 atttgtcttaaaaatataacttttgac-tttgattaagtaatatttacaccattttttataaaaatgttacttgtttttgttgtttaaccaatg 45408784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 28940624 - 28940566
Alignment:
Q  336 aataattacatcactttttctaaaaagttaattgttttggttacttaaccaatgcctcaa 395  Q
    ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||| ||||    
T  28940624 aataattacatca-tttttctaaaaagttatttgttttggctacttaaccaatgcatcaa 28940566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 338
Target Start/End: Original strand, 19202180 - 19202249
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaat 338  Q
    ||||| |||||||||| ||||||||  ||||| |||| ||||||||||||||| ||||||||||| ||||    
T  19202180 caatggttaaggaatccataaatagataatttttcttgaaaatataagttttggcttttgattaaataat 19202249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 391
Target Start/End: Original strand, 635675 - 635823
Alignment:
Q  245 gtcttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    ||||||||||||  || ||||| ||||||| |||||||||||| |||||| || |||||||| || | ||||| | | |||||||||||| |||| ||||    
T  635675 gtcttgctaaccattgctctcatgacaatggttaaggaatctacaaatagaaattttgtcttgaataaataagatgttacttttgattaaataatgatta 635774  T
Q  344 catcactttt-tctaaaaagttaattgttttggttacttaaccaatgcc 391  Q
    ||  ||||||   |||||| |||  |||||||| | |||||||||||||    
T  635775 cacaacttttcaataaaaacttatatgttttggatgcttaaccaatgcc 635823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 386
Target Start/End: Original strand, 2127363 - 2127461
Alignment:
Q  284 ctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaa 383  Q
    |||||||||  ||||||||||||| |||||   |||||| ||||||||||||||||||||||  || |||| |||||| ||| || |||||||| |||||    
T  2127363 ctataaataaaaaatttgtcttaagaatat---ttttgatttttgattaagtaataattacacgac-ttttataaaaaattacttattttggttgcttaa 2127458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 388
Target Start/End: Complemental strand, 29032524 - 29032410
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaattgtttt 373  Q
    ||||||| |||| ||| || || ||||||||||||||||||| | | ||||||||| ||||||| ||||||  |||||||| |||||| ||  |||||||    
T  29032524 ttaaggattctacaaacagaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattacacaactttttcataaaaacttgcttgtttt 29032425  T
Q  374 ggttacttaaccaat 388  Q
     | ||||||| ||||    
T  29032424 agatacttaatcaat 29032410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 44291231 - 44291310
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    ||||||||||||||||||| |  | ||||||  ||||||||  | | |||||| |||||||||||||||||| |||||||    
T  44291231 ttaaggaatctataaatagaatttctgtcttggaaatataaactgtcactttttattaagtaataattacattacttttt 44291310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 337
Target Start/End: Original strand, 25958052 - 25958122
Alignment:
Q  267 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaa 337  Q
    |||||| |||||| |||||| | |||  |||||||||||||||||||||| | | ||||||||| ||||||    
T  25958052 gacaataattaagaaatctacatataaaaaatttgtcttaaaaatataagatgttacttttgataaagtaa 25958122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 1711916 - 1711993
Alignment:
Q  266 agacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    |||||||| |||||||||||| || ||  || |||||||| |||||||||| | | || ||||| |||||||||||||    
T  1711916 agacaatggttaaggaatctaaaattataaattttgtcttgaaaatataagatgttacatttgactaagtaataatta 1711993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 4490894 - 4490822
Alignment:
Q  272 tgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 345  Q
    |||||||||||||   |||||| || ||||||| |||||||||| |||| ||||||||| || |||||||||||    
T  4490894 tgattaaggaatcataaaatagaaattttgtct-aaaaatataaatttttacttttgataaaataataattaca 4490822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 389
Target Start/End: Complemental strand, 8326236 - 8326135
Alignment:
Q  288 aaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaaccaa 387  Q
    |||||| || ||||| ||||||||||||  | | ||||||||| ||| ||| |||||| |||||||  |||||| ||| ||||||| | ||||||| |||    
T  8326236 aaatagaaattttgttttaaaaatataatatgttacttttgatcaagcaatgattacaccacttttcataaaaacttatttgttttagatacttaatcaa 8326137  T
Q  388 tg 389  Q
    ||    
T  8326136 tg 8326135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 19202398 - 19202451
Alignment:
Q  338 taattacatcactttttctaaaaagttaattgttttggttacttaaccaatgcc 391  Q
    ||||||||  ||||||  |||||||||||||||||| ||| |||||||||||||    
T  19202398 taattacactacttttaataaaaagttaattgttttagttgcttaaccaatgcc 19202451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 23877789 - 23877728
Alignment:
Q  284 ctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 345  Q
    |||||||||  ||||||  ||| || |||||||||||||||||| |||||| ||||||||||    
T  23877789 ctataaataaaaaatttaccttgaatatataagttttgacttttaattaagcaataattaca 23877728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 35322113 - 35322042
Alignment:
Q  281 aatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    ||||||||||||| || ||||||||| ||||||||  ||  |||||| |||||||||||||||||| |||||||    
T  35322113 aatctataaatag-aattttgtcttagaaatataaacttc-actttttattaagtaataattacattacttttt 35322042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 390
Target Start/End: Original strand, 15671118 - 15671233
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt-ctaaaaagttaattgtttt 373  Q
    ||||||||||||||||||  |  ||||||||  ||||||||  | | |||||| || ||||||||||||||| |||||||  |||||| ||| ||  |||    
T  15671118 ttaaggaatctataaataaaatttttgtcttcgaaatataaactgtcactttttatcaagtaataattacattactttttaataaaaacttacttcattt 15671217  T
Q  374 ggttacttaaccaatgc 390  Q
    |||| ||||||||||||    
T  15671218 ggtt-cttaaccaatgc 15671233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 269 - 390
Target Start/End: Complemental strand, 18131309 - 18131188
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaatt 368  Q
    ||||||||||| |||| |||||||| ||||||||||| ||||||||||||||||||  |||||||||||||||||||  ||||||  |||||||||| ||    
T  18131309 caatgattaagaaatccataaatagaaaatttgtcttgaaaatataagttttgactactgattaagtaataattacactacttttaataaaaagttactt 18131210  T
Q  369 gttttggttacttaaccaatgc 390  Q
    ||||||||| ||||||||||||    
T  18131209 gttttggttgcttaaccaatgc 18131188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 269 - 367
Target Start/End: Complemental strand, 40607416 - 40607318
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaat 367  Q
    ||||| ||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||  ||||||||||||    
T  40607416 caatggttaagaaatttataaatagaaaatttatcttaaaaatataagttttgacttttgattaagtaataattacactacttttaataaaaagttaat 40607318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 391
Target Start/End: Complemental strand, 10452011 - 10451893
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataa-ttacatcactttttct-aaaaagttaattgttt 372  Q
    |||||||| |||||||||  || ||||| ||||||||||||||||||||||||||||||||||||| ||||| || ||||| | ||||| ||| ||||||    
T  10452011 ttaaggaaactataaataaaaattttgtattaaaaatataagttttgacttttgattaagtaataatttacaccattttttataaaaaaattacttgttt 10451912  T
Q  373 tggttacttaaccaatgcc 391  Q
    | ||| |||||||||||||    
T  10451911 tagttgcttaaccaatgcc 10451893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 12958995 - 12958923
Alignment:
Q  267 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaata 339  Q
    |||||||||||| |||||||||||||| ||||||||||| |||||||||||||| | ||||||||||||||||    
T  12958995 gacaatgattaaagaatctataaatagaaaatttgtcttcaaaatataagtttttatttttgattaagtaata 12958923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 269 - 365
Target Start/End: Complemental strand, 4989813 - 4989717
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagtta 365  Q
    ||||| ||||| || |||||||||  ||||||||||| |||||||||||||||| ||||||| |||||| |||||||| | ||||| ||||||||||    
T  4989813 caatggttaagaaaactataaataaaaaatttgtcttgaaaatataagttttgatttttgatcaagtaacaattacataattttttataaaaagtta 4989717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 345
Target Start/End: Complemental strand, 27283407 - 27283333
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 345  Q
    |||| |||||||| |||||||||| |||||| | ||| || ||||||||||||||||||||||| |||||||||||    
T  27283407 aatggttaaggaaactataaatagaaaatttattttataa-tataagttttgacttttgattaaataataattaca 27283333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 374
Target Start/End: Complemental strand, 13873815 - 13873709
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaat 367  Q
    ||||||||||||||||||||||||  |  ||||||||| ||||||||| | | | |||| |||||||||| ||| ||| | |||||| |||||| |||||    
T  13873815 caatgattaaggaatctataaataaaatttttgtcttagaaatataagatgttatttttaattaagtaatgattgcataattttttcataaaaacttaat 13873716  T
Q  368 tgttttg 374  Q
    |||||||    
T  13873715 tgttttg 13873709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 20822005 - 20821923
Alignment:
Q  272 tgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    |||||||| |||||||| |||| |   ||||||||||||||||| || | |||||| |||||||||||||||||| |||||||    
T  20822005 tgattaagaaatctatagatagaattgttgtcttaaaaatataaattgtcactttttattaagtaataattacattacttttt 20821923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 374
Target Start/End: Original strand, 15869007 - 15869111
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattg 369  Q
    |||| ||||| || |||||||||  ||||||  || |||||||||| |||||| |||| ||||| |||||||||||| ||||| | |||||||||| ||     
T  15869007 aatggttaagaaaactataaataaaaaatttaactaaaaaatataaattttgatttttaattaaataataattacattactttatataaaaagttattta 15869106  T
Q  370 ttttg 374  Q
    |||||    
T  15869107 ttttg 15869111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 34085199 - 34085275
Alignment:
Q  267 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    ||||||| ||||| |||  |||||||  |||||||| || ||||||||||||||||||||| |||||| ||||||||    
T  34085199 gacaatggttaagaaattcataaataaaaaatttgttttgaaaatataagttttgacttttaattaagcaataatta 34085275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 391
Target Start/End: Complemental strand, 11151065 - 11150918
Alignment:
Q  245 gtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    ||||| ||||||||||  |||||  |||||||||||||||||| |||||  |  ||||||||| ||||||||| | | ||||||||| || |||| ||||    
T  11151065 gtcttcctaaccggtgccctcagggcaatgattaaggaatctacaaataaaatttttgtcttagaaatataagatgttacttttgatcaaataatgatta 11150966  T
Q  344 catcactttttctaaaaagttaattgttttggttacttaaccaatgcc 391  Q
    ||  | ||||| |||||| ||| || |||||  | |||||||||||||    
T  11150965 cacaattttttttaaaaacttacttattttgaatgcttaaccaatgcc 11150918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 275 - 391
Target Start/End: Complemental strand, 20542499 - 20542382
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt--ctaaaaagttaattgttt 372  Q
    |||||||||||| |||||| || || |||||  ||||||||| | | ||||||||||||||||| |||||| ||||||||   |||||| ||| | ||||    
T  20542499 ttaaggaatctacaaatagaaatttcgtcttggaaatataagatgttacttttgattaagtaatgattaca-cacttttttcttaaaaacttactcgttt 20542401  T
Q  373 tggttacttaaccaatgcc 391  Q
    ||| | |||||||||||||    
T  20542400 tggatgcttaaccaatgcc 20542382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 33621479 - 33621408
Alignment:
Q  274 attaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 345  Q
    ||||||||||||| |||||  || ||||||||||||||||||  ||| ||||||||| ||||||| ||||||    
T  33621479 attaaggaatctacaaataaaaattttgtcttaaaaatataaaattttacttttgatcaagtaattattaca 33621408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 392
Target Start/End: Original strand, 34678218 - 34678325
Alignment:
Q  285 tataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaac 384  Q
    ||||||||| ||||||||||| ||||| |||  | | ||||||||| ||||||||||||||| | ||||| | |||||||  ||||||||  | ||||||    
T  34678218 tataaatagaaaatttgtcttgaaaatgtaaaatgttacttttgatcaagtaataattacataattttttattaaaagttgcttgttttgaatgcttaac 34678317  T
Q  385 caatgcct 392  Q
    || |||||    
T  34678318 cattgcct 34678325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 375
Target Start/End: Original strand, 44648933 - 44649040
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaat 367  Q
    ||||| |||||||||||| |||||| || |||||||| |||||||||  | | ||||||||| ||||||| ||||||  |||||||| | |||| ||| |    
T  44648933 caatggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttgataaagtaatgattacacaactttttcatgaaaacttatt 44649032  T
Q  368 tgttttgg 375  Q
    ||||||||    
T  44649033 tgttttgg 44649040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 345
Target Start/End: Original strand, 18200654 - 18200752
Alignment:
Q  248 ttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 345  Q
    ||||||| |||||| |||| || |||| ||||| |||||| |||||  || ||||||||||||||||||  | | ||||||||||||||||| ||||||    
T  18200654 ttgctaatcggtgtcctcaagataatggttaagaaatctacaaataaaaattttgtcttaaaaatataacatgttacttttgattaagtaatgattaca 18200752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 10652500 - 10652572
Alignment:
Q  245 gtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataag 316  Q
    |||||||||||| ||| ||||||  |||| ||||| |||||||||||||| || ||||||||| |||||||||    
T  10652500 gtcttgctaaccagtgctctcagggcaataattaaagaatctataaatagaaattttgtcttataaatataag 10652572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 392
Target Start/End: Original strand, 30924208 - 30924284
Alignment:
Q  316 gttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaaccaatgcct 392  Q
    ||||| ||||||||||||||||||||||||  | ||||| |||||| ||| || ||||||||  || ||||||||||    
T  30924208 gtttttacttttgattaagtaataattacactattttttataaaaatttacttattttggttgtttgaccaatgcct 30924284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 345
Target Start/End: Original strand, 3347471 - 3347582
Alignment:
Q  235 agaaaaaagagtcttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaa 333  Q
    |||||||| ||||||||||||  ||   |||| ||||||| ||||| |||||| |||||  || |||||||| |||||||||| | | |||||| || ||    
T  3347471 agaaaaaaaagtcttgctaacaagtaccctcatgacaatggttaagaaatctacaaataaaaattttgtcttgaaaatataagatgttacttttaataaa 3347570  T
Q  334 gtaataattaca 345  Q
    ||||||||||||    
T  3347571 gtaataattaca 3347582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 354
Target Start/End: Original strand, 12987634 - 12987721
Alignment:
Q  267 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    ||||||| |||| |||||  ||||| | || |||||||| |||| ||||||||| |||||||||||| |||| |||||| | ||||||    
T  12987634 gacaatggttaatgaatcactaaatggaaattttgtcttgaaaacataagtttttacttttgattaaataatgattacaccgcttttt 12987721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 388
Target Start/End: Original strand, 35901412 - 35901531
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaatt 368  Q
    |||| |||||||||||| |||||| || ||||| || ||||| |||| | | |||||| ||||| |||| ||| ||  |||||||| |||||| ||| ||    
T  35901412 aatggttaaggaatctacaaatagaaattttgttttgaaaatgtaagatgttacttttaattaaataatgattgcacaactttttcataaaaacttactt 35901511  T
Q  369 gttttggttacttaaccaat 388  Q
    ||||||| | ||||||||||    
T  35901512 gttttggatgcttaaccaat 35901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 10654867 - 10654939
Alignment:
Q  245 gtcttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataag 316  Q
    |||||||||||| ||| ||||| |||||||||||| |||| |||||| || ||  |||||||| |||||||||    
T  10654867 gtcttgctaaccagtgctctcaagacaatgattaaagaatttataaagagaaatattgtcttataaatataag 10654939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 269 - 414
Target Start/End: Original strand, 16831096 - 16831241
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaatt 368  Q
    ||||| ||||| || |||||||||  |||||||| |||||||||||| ||||||||||||||||||||||||||| |  ||||||| |||||||||| ||    
T  16831096 caatggttaagaaaactataaatataaaatttgttttaaaaatataaattttgacttttgattaagtaataattatactactttttataaaaagttattt 16831195  T
Q  369 gttttggttacttaaccaatgcctcaaaggcactctttagcattct 414  Q
    ||||||||| ||||| |||||||| || | |||| |||||||||||    
T  16831196 gttttggttgcttaatcaatgccttaaggacactgtttagcattct 16831241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 245 - 391
Target Start/End: Original strand, 2908181 - 2908328
Alignment:
Q  245 gtcttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    ||||| ||||||||||| |||| | ||||| |||||||| |||||||||| ||||||||||| ||||||||| |||||| |||||| |||||||||||||    
T  2908181 gtcttactaaccggtgtcctcacggcaatggttaaggaaactataaatagaaaatttgtcttgaaaatataaattttgatttttgagtaagtaataatta 2908280  T
Q  344 catcactttttctaaaaagttaattgttttggttacttaaccaatgcc 391  Q
    || |||||| | |||||||| | || |||||||| |||||||||||||    
T  2908281 caccactttctataaaaagtcacttattttggttgcttaaccaatgcc 2908328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 245 - 390
Target Start/End: Complemental strand, 53142924 - 53142777
Alignment:
Q  245 gtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    |||||||||||| |||| ||| || ||||| |||||||| |||||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||||    
T  53142924 gtcttgctaaccagtgtcctcggaacaatggttaaggaagctataaataaaaaatttgtcatgaaaatataagttttaacttttgattaagtaataatta 53142825  T
Q  344 catca-ctttttctaaaaagttaattgttttggttacttaaccaatgc 390  Q
    |||||  ||||| |||||||||| |||||| |||| ||||||||||||    
T  53142824 catcatttttttataaaaagttatttgtttcggttgcttaaccaatgc 53142777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 275 - 388
Target Start/End: Complemental strand, 55090892 - 55090779
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttg 374  Q
    |||||||| ||||||||   ||||||||||| ||||||||||||||||||||||||||||| |||||||||  ||||||| |||||||||| |||||||     
T  55090892 ttaaggaaactataaatgaaaaatttgtcttgaaaatataagttttgacttttgattaagttataattacacaactttttataaaaagttacttgtttta 55090793  T
Q  375 gttacttaaccaat 388  Q
    ||| ||||||||||    
T  55090792 gttgcttaaccaat 55090779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 246 - 376
Target Start/End: Original strand, 28299261 - 28299392
Alignment:
Q  246 tcttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattac 344  Q
    |||| |||||||||||||| | ||||||| ||||||||  ||||||||| |||||| | || ||||||||||||||| ||||||||||| ||||||||||    
T  28299261 tctttctaaccggtgttcttatgacaatggttaaggaaattataaatagaaaatttatattgaaaatataagttttgtcttttgattaaataataattac 28299360  T
Q  345 atcactttttctaaaaagttaattgttttggt 376  Q
    ||||| |||| |||||||||| ||| ||||||    
T  28299361 atcacattttataaaaagttacttgctttggt 28299392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 295 - 383
Target Start/End: Complemental strand, 19248980 - 19248892
Alignment:
Q  295 aaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaa 383  Q
    |||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |||||| ||| ||||||||||| |||||    
T  19248980 aaatttgtcttaaaaatataagttttgatttttaattaagtaatgattacatcactttttataaaaaattagttgttttggttccttaa 19248892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 345
Target Start/End: Original strand, 45921335 - 45921410
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 345  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  45921335 aatggttaaggaatctataaatagaaaatttgtcttgaaaatataagttttgactattgattaagtaataattaca 45921410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 414
Target Start/End: Complemental strand, 9119359 - 9119213
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttct-aaaaagttaat 367  Q
    ||||| |||| |||||||||||||| ||||||||  | ||||||||||||||||||||||||||||||| |||||||  ||||||  | ||||| ||| |    
T  9119359 caatggttaaagaatctataaatagaaaatttgtggtgaaaatataagttttgacttttgattaagtaacaattacactacttttaataaaaaaattact 9119260  T
Q  368 tgttttggttacttaaccaatgcctcaaaggcactctttagcattct 414  Q
    |||||||||| ||||||| || |||  |  ||||| |||||||||||    
T  9119259 tgttttggttgcttaaccgatacctttagagcactatttagcattct 9119213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 269 - 354
Target Start/End: Original strand, 51100021 - 51100106
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    ||||| ||||||||||||||||||| |||||| | || |||||||||||||| ||||||||||||||||||||||||  |||||||    
T  51100021 caatggttaaggaatctataaatagaaaatttattttgaaaatataagttttaacttttgattaagtaataattacactacttttt 51100106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 284 - 391
Target Start/End: Original strand, 5645657 - 5645764
Alignment:
Q  284 ctataaataggaaatttgtcttaaaaatat-aagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttactta 382  Q
    |||||||||| ||||||||||| |||| || |||||||||||||||||||| |||||||||||  ||||||| |||||||||| ||||||| ||| ||||    
T  5645657 ctataaatagaaaatttgtcttgaaaaaattaagttttgacttttgattaaataataattacactactttttataaaaagttatttgttttagtt-ctta 5645755  T
Q  383 accaatgcc 391  Q
    || ||||||    
T  5645756 acaaatgcc 5645764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 4860234 - 4860143
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaa 361  Q
    |||| ||||||||  || |||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  4860234 aatggttaaggaaattacaaatagaaaatttgttttgaaaatataagttttgacttttgattaagtaataattacatccttttttataaaaa 4860143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 285 - 389
Target Start/End: Original strand, 37461778 - 37461881
Alignment:
Q  285 tataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaac 384  Q
    ||||||||| ||||| || |||||||||||| |||||| |||| ||||||||||||||||| |||||||| |||||||||| || ||||  || ||||||    
T  37461778 tataaatagaaaatt-gttttaaaaatataaattttgatttttaattaagtaataattacaccactttttataaaaagttacttattttaattgcttaac 37461876  T
Q  385 caatg 389  Q
    |||||    
T  37461877 caatg 37461881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 32325116 - 32325057
Alignment:
Q  295 aaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  32325116 aaatttgtcttgaaaatataatttttgacttttgattaagtaataattacaccacttttt 32325057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 374
Target Start/End: Original strand, 50101287 - 50101381
Alignment:
Q  281 aatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatca-ctttttctaaaaagttaattgttttg 374  Q
    ||||||||||||  |||||||||||||||||||||||||||| |||||||||| || |||||| ||||  ||||| |||||| ||| ||||||||    
T  50101287 aatctataaataaaaaatttgtcttaaaaatataagttttgatttttgattaaatattaattatatcatttttttataaaaaattatttgttttg 50101381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 14347124 - 14347191
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    |||||||| |||||||||  |||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  14347124 ttaaggaaactataaataa-aaatttatcttaaaaatataagttttgatttttgattaagtaataatta 14347191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 389
Target Start/End: Complemental strand, 20775189 - 20775069
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaatt 368  Q
    |||| |||| |||||||||||||  |||||||||||| ||||||||| | | | ||||||| || |||| ||||||| |||||||| |||||| ||| ||    
T  20775189 aatggttaatgaatctataaataaaaaatttgtcttagaaatataagatattatttttgatcaaataattattacataactttttcataaaaacttactt 20775090  T
Q  369 gttttggttacttaaccaatg 389  Q
    ||||||| | |||||||||||    
T  20775089 gttttggatgcttaaccaatg 20775069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 374
Target Start/End: Complemental strand, 37992958 - 37992868
Alignment:
Q  281 aatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttg 374  Q
    ||||||||||||| | |||||| || ||||||||| |||||| |||||||||||   ||||||||| ||||||  |||||||||| ||||||||    
T  37992958 aatctataaatagaagatttgttttgaaaatataaattttgatttttgattaag---taattacattacttttaataaaaagttacttgttttg 37992868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 268 - 391
Target Start/End: Complemental strand, 34236299 - 34236175
Alignment:
Q  268 acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttct--aaaaagtta 365  Q
    |||||| |||| ||| |||||||||  ||||||||| | |||||||||| ||| |||||||||||||| |||||||||  | ||||| |  ||||| |||    
T  34236299 acaatggttaaagaaactataaataaaaaatttgtcctgaaaatataag-tttaacttttgattaagtgataattacactattttttataaaaaaaatta 34236201  T
Q  366 attgttttggttacttaaccaatgcc 391  Q
     |||||||||||  ||||||||||||    
T  34236200 cttgttttggttgtttaaccaatgcc 34236175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 40298089 - 40298015
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    ||||| |||| ||| |||||||||| |||||| | || |||||||||||||||| |||||||||||| |||||||    
T  40298089 caatggttaatgaaactataaatagaaaatttattttgaaaatataagttttgatttttgattaagtgataatta 40298015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 32653879 - 32653931
Alignment:
Q  302 tcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    |||||||||||||| |||| |||||||| |||||||||||||||||| |||||    
T  32653879 tcttaaaaatataaattttaacttttgaataagtaataattacatcatttttt 32653931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 353
Target Start/End: Original strand, 32543983 - 32544060
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttt 353  Q
    ||||||||||||||||||  |||||||||   ||||||||| |||| ||||||||| | ||||| ||||||||||||||    
T  32543983 ttaaggaatctataaataaaaaatttgtcgagaaaatataaatttt-acttttgatcaggtaatgattacatcactttt 32544060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 32651953 - 32651999
Alignment:
Q  302 tcttaaaaatataagttttgacttttgattaagtaataattacatca 348  Q
    |||||||||||||| |||| |||||||| ||||||||||||||||||    
T  32651953 tcttaaaaatataaattttaacttttgaataagtaataattacatca 32651999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 388
Target Start/End: Complemental strand, 48524640 - 48524493
Alignment:
Q  241 aagagtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaata 339  Q
    ||||||||| |||||| |||  |||||| ||||||||||| || |||||||||  |||||||| |  |||||||||||||||| ||||  |||  | |||    
T  48524640 aagagtcttactaaccagtgccctcagaacaatgattaagcaaactataaataaaaaatttgtatagaaaatataagttttgattttttttta--tcata 48524543  T
Q  340 attacatca-ctttttctaaaaagttaattgttttggttacttaaccaat 388  Q
    ||||||  |  ||||| |||||||||| ||||||||||| ||||| ||||    
T  48524542 attacacaatttttttataaaaagttacttgttttggttgcttaatcaat 48524493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 31089511 - 31089572
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgat 330  Q
    ||||||||||||||||||||||||  || ||||||| ||||||||||| | | |||||||||    
T  31089511 caatgattaaggaatctataaataaaaattttgtctaaaaaatataagatgttacttttgat 31089572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 392
Target Start/End: Original strand, 22812064 - 22812187
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgatt-aagtaataattacatcactttttctaaaaagttaatt 368  Q
    |||| |||| ||| || ||||||| | |||| | |||||||||||||||||||| ||| ||| ||||||||||||    ||||||| |||||||||  ||    
T  22812064 aatggttaaagaaactgtaaatagaatatttattttaaaaatataagttttgacgtttcattcaagtaataattatccaactttttataaaaagttgctt 22812163  T
Q  369 gttttggttacttaaccaatgcct 392  Q
    |||||  || ||||| ||||||||    
T  22812164 gttttaattgcttaatcaatgcct 22812187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 354
Target Start/End: Complemental strand, 31647841 - 31647754
Alignment:
Q  267 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    |||| ||||||| |||||||||||||| |  | ||||||| ||||||||  | | |||||| || ||||||||||||||| |||||||    
T  31647841 gacactgattaaagaatctataaatagaatttctgtcttagaaatataaactatcactttttatcaagtaataattacattacttttt 31647754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 21762176 - 21762093
Alignment:
Q  268 acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttt 353  Q
    |||||| |||| |||  ||||||||  ||||||||||||||  ||||| |||| |||||||||||| ||||||||| |||| ||||    
T  21762176 acaatggttaaagaaattataaataaaaaatttgtcttaaa--tataaattttaacttttgattaaataataattatatcattttt 21762093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 22611893 - 22611967
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattac 344  Q
    |||||||||| |||||| |||||  || ||||||||||||||||||| | | ||||| ||| ||||||| |||||    
T  22611893 aatgattaagaaatctacaaatataaattttgtcttaaaaatataagatgttactttcgataaagtaatgattac 22611967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 414
Target Start/End: Complemental strand, 30694395 - 30694258
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcact-ttttctaaaaagttaattgtttt 373  Q
    |||||||| | |||||||| || |||||||| |||||||||||| |   ||||||| |||||||||||| | | || |||| | |||| ||| |||||||    
T  30694395 ttaaggaaaccataaatagaaattttgtcttgaaaatataagttgt---ttttgatcaagtaataattatacctctgttttgtgaaaacttacttgtttt 30694299  T
Q  374 ggttacttaaccaatgcctcaaaggcactctttagcattct 414  Q
    |||| | |||||||| ||     ||||||||||||||||||    
T  30694298 ggttgcataaccaattcccttggggcactctttagcattct 30694258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 12095070 - 12094969
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaattgtttt 373  Q
    |||||||||||| |||||| || ||||  || |||||||||| | | ||||||||| ||||||| ||||||  |||||||| |||||| ||| || ||||    
T  12095070 ttaaggaatctacaaatagaaattttgcattgaaaatataagatattacttttgataaagtaatgattacacaactttttcataaaaacttacttatttt 12094971  T
Q  374 gg 375  Q
    ||    
T  12094970 gg 12094969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 389
Target Start/End: Original strand, 35808568 - 35808621
Alignment:
Q  336 aataattacatcactttttctaaaaagttaattgttttggttacttaaccaatg 389  Q
    ||||||||||  ||||||| |||||||||| || |||||||| |||||||||||    
T  35808568 aataattacacaactttttataaaaagttacttattttggttgcttaaccaatg 35808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 28668388 - 28668451
Alignment:
Q  244 agtcttgctaaccggtgttctcagacaatga--ttaaggaatctataaataggaaatttgtctt 305  Q
    ||||||| ||||||||| ||||||  ||||   ||||||||||||||||||| |||||||||||    
T  28668388 agtcttgataaccggtgctctcaggtaatgtggttaaggaatctataaatagaaaatttgtctt 28668451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 41142318 - 41142374
Alignment:
Q  298 tttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    |||||||| |||| ||||| | | |||||||||||| |||||||||||| |||||||    
T  41142318 tttgtcttgaaaaaataaggtcttacttttgattaaataataattacattacttttt 41142374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 345
Target Start/End: Complemental strand, 48400996 - 48400920
Alignment:
Q  270 aatgattaaggaat-ctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 345  Q
    |||||||||||||  |||||||||  |||||||| || ||||||||| |||| || ||| |||||||||||| ||||    
T  48400996 aatgattaaggaaaactataaataaaaaatttgttttgaaaatataaattttaacatttaattaagtaataactaca 48400920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 245 - 372
Target Start/End: Complemental strand, 27641 - 27513
Alignment:
Q  245 gtcttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    |||||||||||| |||  |||| |||||||||||||| | |||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27641 gtcttgctaaccagtgccctcacgacaatgattaagggaactataaataaaaaatttgtctttaaaatataagttttgacttttgattaagtaataatta 27542  T
Q  344 catcactttttctaaaaagttaattgttt 372  Q
    ||  ||||||| |||||||||| ||||||    
T  27541 cactactttttataaaaagttacttgttt 27513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 269 - 361
Target Start/End: Complemental strand, 31160844 - 31160752
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaa 361  Q
    ||||| ||||||||  ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  31160844 caatggttaaggaaaatataaatagaaaatttgtcttaaaaatataaattttgacttttgattaagtaataattacatcactttttataaaaa 31160752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 269 - 374
Target Start/End: Original strand, 34382628 - 34382733
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaatt 368  Q
    ||||||||||| || |||||||||  |||||| ||||||||||||||||||| | ||||||||||  ||||||||||  ||||||| |||||||||| ||    
T  34382628 caatgattaagaaaactataaataaaaaatttatcttaaaaatataagttttaatttttgattaaacaataattacacaactttttataaaaagttactt 34382727  T
Q  369 gttttg 374  Q
    ||||||    
T  34382728 gttttg 34382733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 28490665 - 28490736
Alignment:
Q  290 ataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaa 361  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||  ||||||| ||||||    
T  28490665 atagaaaatttgtcttaaaaatataagttttgatttttgcttaagtaataattacacaactttttataaaaa 28490736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 39283788 - 39283717
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataa 340  Q
    ||||| |||| ||| |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  39283788 caatggttaatgaaactataaatagaaaatttatcttaaaaatataagttttgatttttgattaagtaataa 39283717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 11065862 - 11065936
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    ||||| |||||||| |||||| ||  |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  11065862 caatggttaaggaaactataattataaaatttctcttgaaaatataagttttgacttttgattaagtaataatta 11065936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 388
Target Start/End: Original strand, 13969100 - 13969214
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaattgtttt 373  Q
    |||||||||||| |||||| || |||||||| |||||||||  | | |||||| |||||||||| ||||||  | |||||| |||||| ||| |||||||    
T  13969100 ttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttaattaagtaattattacacaattttttcataaaaacttacttgtttt 13969199  T
Q  374 ggttacttaaccaat 388  Q
    |||| ||||||||||    
T  13969200 ggttgcttaaccaat 13969214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 361
Target Start/End: Original strand, 45438985 - 45439051
Alignment:
Q  295 aaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaa 361  Q
    |||||| ||||||||||||||||||| |||||| ||||||| |||||| ||||||||||| ||||||    
T  45438985 aaatttatcttaaaaatataagttttaacttttaattaagtcataattgcatcactttttataaaaa 45439051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 391
Target Start/End: Original strand, 50015771 - 50015893
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaatt 368  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||| | | | ||||||||| ||| ||  |||| |  |||||||| |||||| ||| ||    
T  50015771 aatgattaaggaatctcaaaataggaattttgtcttaaaaatatatgatattacttttgatcaagcaacgattatacaactttttcataaaaatttattt 50015870  T
Q  369 gttttggttacttaaccaatgcc 391  Q
    ||||||| ||||||| |||||||    
T  50015871 gttttggatacttaaacaatgcc 50015893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 360
Target Start/End: Complemental strand, 48375353 - 48375268
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaa 360  Q
    ||||| || |||||||||  ||| ||||||  ||||||||||||||||| ||||||||||| ||||||||| |||||||| |||||    
T  48375353 ttaagaaaactataaatataaaaattgtctagaaaatataagttttgacatttgattaagtgataattacaccactttttataaaa 48375268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 364
Target Start/End: Complemental strand, 41936262 - 41936164
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataa---gttttgacttttgatt-aagtaataattacatcactttttctaaaaagtt 364  Q
    ||||||| ||||| |||||||||  ||||||||||| |||||||||   |||||||||||||||| ||||||||||||||  || |||| |||||||||    
T  41936262 aatgattgaggaaactataaataaaaaatttgtcttgaaaatataagttgttttgacttttgattaaagtaataattacactacattttataaaaagtt 41936164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 382
Target Start/End: Original strand, 17995194 - 17995277
Alignment:
Q  299 ttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttactta 382  Q
    ||||||||||||||||||||||  |||| ||| ||||||| ||||||||| ||||| || ||||||  ||||||||||| ||||    
T  17995194 ttgtcttaaaaatataagtttttgctttcgataaagtaattattacatcagtttttatagaaagttttttgttttggttgctta 17995277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 35876892 - 35876802
Alignment:
Q  245 gtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaag 334  Q
    |||||||||||||||| | ||||  ||||||||||  ||  || |||||  |||||||||||||||||||||||||| |||||||||||||    
T  35876892 gtcttgctaaccggtgctttcagggcaatgattaaaaaaattagaaataaaaaatttgtcttaaaaatataagttttaacttttgattaag 35876802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 27160335 - 27160371
Alignment:
Q  309 aatataagttttgacttttgattaagtaataattaca 345  Q
    |||||||||||||||||||||||||||||||||||||    
T  27160335 aatataagttttgacttttgattaagtaataattaca 27160371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 397
Target Start/End: Complemental strand, 46836288 - 46836188
Alignment:
Q  298 tttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttct-aaaaagttaattgttttggttacttaaccaatgcctcaaa 396  Q
    |||||||| |||||||| |||||||||| ||||||||||||||||| |||| | ||| | ||||| ||| |||||||| ||  |||| ||||||| ||||    
T  46836288 tttgtcttgaaaatataggttttgacttatgattaagtaataattatatcaatgtttataaaaaaattatttgttttgattgtttaatcaatgccccaaa 46836189  T
Q  397 g 397  Q
    |    
T  46836188 g 46836188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 27908999 - 27908952
Alignment:
Q  307 aaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    ||||||||| |||||||||||||||||||||||||||||  |||||||    
T  27908999 aaaatataaattttgacttttgattaagtaataattacacaacttttt 27908952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 10226458 - 10226543
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc 355  Q
    ||||| ||||||||||| |||||| || |||||||| |||||||||| | | | ||||||| ||||||| ||||||  ||||||||    
T  10226458 aatgagtaaggaatctacaaatagaaattttgtcttgaaaatataagatgttaattttgataaagtaatgattacacaactttttc 10226543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 11449177 - 11449092
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc 355  Q
    |||| |||| ||||||| |||||  |||||||||||||||||||||  | | | ||||||| | ||||||||||||| ||||||||    
T  11449177 aatggttaaagaatctacaaataaaaaatttgtcttaaaaatataatatgttaattttgatcatgtaataattacataactttttc 11449092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 345
Target Start/End: Original strand, 8001742 - 8001818
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 345  Q
    ||||| |||||||||||| |||||| || ||| |||| |||||||||| | | ||||||||| ||||||| ||||||    
T  8001742 caatggttaaggaatctagaaatagaaattttatcttgaaaatataagatgttacttttgataaagtaatgattaca 8001818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 40430952 - 40430884
Alignment:
Q  248 ttgctaaccggtgttctcag-acaatgattaaggaatctataaataggaaatttgtcttaaaaatataa 315  Q
    |||||||| |||||||| || |||||||||||||| |||| |||||  |||||| ||||||||||||||    
T  40430952 ttgctaacgggtgttcttaggacaatgattaaggattctagaaataaaaaatttatcttaaaaatataa 40430884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 374
Target Start/End: Original strand, 33148125 - 33148232
Alignment:
Q  268 acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaa 366  Q
    |||||| ||||||||| || |||| | || ||||||||||||||||||| |   ||||||||| ||||||| ||||||  | |||||| |||||| |||     
T  33148125 acaatggttaaggaatatacaaattgaaattttgtcttaaaaatataagatgctacttttgatcaagtaatgattacacaattttttcataaaaacttac 33148224  T
Q  367 ttgttttg 374  Q
    ||||||||    
T  33148225 ttgttttg 33148232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 52762298 - 52762383
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaat---aattacatcacttt 352  Q
    ||||| ||||| |||||||||||  || ||||||||  |||||||| |||| ||||||||| |||||||   ||||||||||||||    
T  52762298 aatgactaaggtatctataaataaaaattttgtcttgtaaatataaattttaacttttgatcaagtaataataattacatcacttt 52762383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 388
Target Start/End: Original strand, 26890070 - 26890183
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactt-tttctaaaaagttaattgtttt 373  Q
    ||||| ||||||||||||  || ||||||||||| | | ||||| | |||||||| ||| || ||||||||  |||  ||| |||||| ||| |||||||    
T  26890070 ttaagaaatctataaataaaaattttgtcttaaaca-acaagttgttacttttgactaactattaattacactactcatttataaaaacttacttgtttt 26890168  T
Q  374 ggttacttaaccaat 388  Q
    |||||||||||||||    
T  26890169 ggttacttaaccaat 26890183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 9209346 - 9209273
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    |||||||||||||||||||||||  |  ||||| || ||||||  |||||| |||| |||| ||||||||||||    
T  9209346 aatgattaaggaatctataaataaaagttttgttttgaaaataagagttttaacttatgatcaagtaataatta 9209273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 394
Target Start/End: Original strand, 33827873 - 33827945
Alignment:
Q  322 acttttgattaagtaataattacatcacttttt-ctaaaaagttaattgttttggttacttaaccaatgcctca 394  Q
    |||||| |||||||||||||||||| |||||||  |||||||||| ||  ||||||| |||||||||| |||||    
T  33827873 actttttattaagtaataattacattactttttaataaaaagttattttatttggtt-cttaaccaatacctca 33827945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 394
Target Start/End: Complemental strand, 33840092 - 33840020
Alignment:
Q  322 acttttgattaagtaataattacatcacttttt-ctaaaaagttaattgttttggttacttaaccaatgcctca 394  Q
    |||||| |||||||||||||||||| |||||||  |||||||||| ||  ||||||| |||||||||| |||||    
T  33840092 actttttattaagtaataattacattactttttaataaaaagttattttatttggtt-cttaaccaatacctca 33840020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 391
Target Start/End: Complemental strand, 38597560 - 38597475
Alignment:
Q  307 aaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaattgttttggttacttaaccaatgcc 391  Q
    |||||||||| | | ||||||||||||||||| |||| |  |||||||  | |||| ||| ||||||||| |||||||||||||||    
T  38597560 aaaatataagatatcacttttgattaagtaatgattagacaacttttttattaaaacttacttgttttggatacttaaccaatgcc 38597475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 47496928 - 47496864
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataa 340  Q
    ||||||||| ||||||||| || ||| ||||||||||||||||| | | ||||||| |||||||||    
T  47496928 ttaaggaatttataaatagaaattttatcttaaaaatataagttgtta-ttttgatgaagtaataa 47496864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 354
Target Start/End: Original strand, 30627607 - 30627695
Alignment:
Q  266 agacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 354  Q
    ||||| |||||||||||||||||||||| |  | ||||||  ||||||||  | | |||||| || ||||||| ||||||| |||||||    
T  30627607 agacactgattaaggaatctataaatagaatttatgtcttggaaatataacctgtcactttttataaagtaatgattacattacttttt 30627695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 35873563 - 35873495
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    |||| |||||| ||||||  ||||||||||| ||||| ||| |||| |||||| || ||||||||||||    
T  35873563 ttaaagaatctttaaataaaaaatttgtcttcaaaatgtaaatttttacttttcatgaagtaataatta 35873495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 384
Target Start/End: Original strand, 46295866 - 46295982
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaat 367  Q
    ||||| |||||||||||| |||||  || ||| |||| |||||||||  | | ||||||||| ||||||| || |||  |||||||| |||||| ||| |    
T  46295866 caatggttaaggaatctacaaataaaaattttatcttgaaaatataaaatgttacttttgatcaagtaatcatgacacaactttttcataaaaacttatt 46295965  T
Q  368 tgttttggttacttaac 384  Q
    |||||||| | ||||||    
T  46295966 tgttttggatgcttaac 46295982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 275 - 414
Target Start/End: Complemental strand, 17646 - 17506
Alignment:
Q  275 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttct-aaaaagttaattgtttt 373  Q
    ||||||||||||||||||| |||||||  || ||||||||||||| || |||||||||| ||||||||| || ||||||  | ||||||||| |||||||    
T  17646 ttaaggaatctataaatagaaaatttgagttgaaaatataagtttcgaattttgattaattaataattatattacttttaataaaaaagttatttgtttt 17547  T
Q  374 ggttacttaaccaatgcctcaaaggcactctttagcattct 414  Q
    | ||  ||||||||||||| || |||| | ||||| |||||    
T  17546 gattgtttaaccaatgccttaagggcattatttagtattct 17506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 388
Target Start/End: Complemental strand, 31547 - 31466
Alignment:
Q  307 aaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaaccaat 388  Q
    ||||||||||||||| ||||||||||| ||||||||| |    ||||| |||||||||| ||||||||||| ||||||||||    
T  31547 aaaatataagttttgccttttgattaactaataattataaatttttttataaaaagttacttgttttggttgcttaaccaat 31466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 329
Target Start/End: Original strand, 15337 - 15421
Alignment:
Q  246 tcttgctaaccggtgttctcag-acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttga 329  Q
    ||||||||||| ||| |||||| | |||||||||||||| ||||||||| |  |||||||| |||||||||| | | ||||||||    
T  15337 tcttgctaaccagtgctctcaggataatgattaaggaatttataaatagaatttttgtcttgaaaatataagatgttacttttga 15421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 345
Target Start/End: Original strand, 29980 - 30058
Alignment:
Q  267 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 345  Q
    |||||| ||||||||||||| |||||| || ||| | || |||||||||| | | |||||| ||||| |||||||||||    
T  29980 gacaataattaaggaatctacaaatagaaactttattttgaaaatataagatgttacttttaattaaataataattaca 30058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 12996 - 12923
Alignment:
Q  270 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 343  Q
    |||| |||| ||| |||||||||| ||| || | |||||||||||| |||  |||||||||| |||||||||||    
T  12996 aatggttaaagaaactataaatagaaaaattattttaaaaatataaatttaaacttttgatttagtaataatta 12923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 337
Target Start/End: Complemental strand, 120787 - 120719
Alignment:
Q  269 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaa 337  Q
    ||||| |||||||||||| |||||| || |||||||| |||||||||| | | ||||||| | ||||||    
T  120787 caatggttaaggaatctacaaatagaaattttgtcttgaaaatataagatgtcacttttggtaaagtaa 120719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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