View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_low_1 (Length: 719)
Name: NF5290_low_1
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 638; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 16 - 709
Target Start/End: Complemental strand, 46809043 - 46808350
Alignment:
| Q |
16 |
cagtaagtatggctttccctgcatacacatataataacaaacaaattagttatgtatgtaaaatgaagaagaaaaactactattaatggatgttgaactc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46809043 |
cagtaagtatggctttccctgcatacacatataataacaaacaaattagttatgtatgtaaaatgaagaagaaaaactaccattaatggatgttgaactc |
46808944 |
T |
|
| Q |
116 |
aaattcttccaacaatgcaagatgttatagtaatgtaacataataaaataattacgtaccactaaggactacaaggatgaagtcggcatcagtgtggtgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
46808943 |
aaattcttccaacaatgcaagatgttatagtaatataacataataaaataattacgcaccactgaggactacaaggataaagtcggcatcagtgtggtgg |
46808844 |
T |
|
| Q |
216 |
gggaggaagatggtgtggggttttgctctgtactccaaaagacggtagttttttaaattttcaaataagtttgaacgtttgtcaaacctttggatgagac |
315 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46808843 |
gggaggaagatggtgtggggtttggctctgtactccaaaagacggtagttttttaaattttgaaataagtttgaacgtttgtcaaacctttggatgagac |
46808744 |
T |
|
| Q |
316 |
gaatgtgaccattttcgttctcaaagagtgtttggaacctgttagacctgaacaaaaaagggtttcttcttccttctgactcagaagaaccttcttcctc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46808743 |
gaatgtgaccattttcgttctcaaagagtgtttggaacctgttagacctgaacaaaaaagggtttcttcttccttctgactctgaagaaccttcttcctc |
46808644 |
T |
|
| Q |
416 |
ctctccacgctcacggcgtgaaggtgtgcgtgaaggtctatcccctttctgatgttcttcttcctttttccttctctcctctctatgcctcaacctcgcc |
515 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46808643 |
ctctccacgctcacgacgtgaaggtgtgcgtgaaggtctatcccctttctgatgttcttcttccttttgccttctctcctctctatgcctcaacctcgcc |
46808544 |
T |
|
| Q |
516 |
ctctcatctggatcttcatgacgttggcgacctctccactcttcatcctctcgtttctcccatttctctctttcacgtccaggttgatgtttttgtcgct |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46808543 |
ctctcatctggatcttcatgacgttggcgacctctccactcttcatcttctcgtttctcccatttctccctttcacgtccaggttgatgtttttgtcgct |
46808444 |
T |
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| Q |
616 |
cctctttctctcgttcctcctttccacgtgaaggtctccattgttcagggcgttgttcttggccttcccaacgaccttcgcgtgtaggtctctg |
709 |
Q |
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| T |
46808443 |
cctctttctcacgttcctcctttccacgtgaaggtctccattgttcagggcgttgttcttggcctttccaacgaccttcgcgtgtaggtctctg |
46808350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 707
Target Start/End: Complemental strand, 46808196 - 46808118
Alignment:
| Q |
629 |
ttcctcctttccacgtgaaggtctccattgttcagggcgttgttcttggccttcccaacgaccttcgcgtgtaggtctc |
707 |
Q |
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||||||| || || ||||||||||||||||| |||||||||||||||||||||| ||||||| | |||| ||||||| |
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| T |
46808196 |
ttcctccctttcatgtgaaggtctccattgtccagggcgttgttcttggccttcttgacgacctccacgtggaggtctc |
46808118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 160 - 361
Target Start/End: Complemental strand, 30285400 - 30285199
Alignment:
| Q |
160 |
aaaataattacgtaccactaaggactacaaggatgaagtcggcatcagtgtggtgggggaggaagatggtgtggggttttgctctgtactccaaaagacg |
259 |
Q |
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|||||||||| ||||||||| ||||||||| |||||||| |||||| |||| || || || |||| |||||| ||||| | || ||||| || || |
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| T |
30285400 |
aaaataattaattaccactaacgactacaagaatgaagtcagcatcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaagagtcg |
30285301 |
T |
|
| Q |
260 |
gtagttttttaaattttcaaataagtttgaacgtttgtcaaacctttggatgagacgaatgtgaccattttcgttctcaaagagtgtttggaacctgtta |
359 |
Q |
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|||||||| | ||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| |||||||| || ||||| ||||||||| |
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| T |
30285300 |
gtagttttgaagattttcaaatattttggaacgtttgtcaaacctttggaggagacgaatgtgaccattttcattctcaaaaagagtttgaaacctgtta |
30285201 |
T |
|
| Q |
360 |
ga |
361 |
Q |
| |
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|| |
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| T |
30285200 |
ga |
30285199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 172 - 361
Target Start/End: Complemental strand, 30313895 - 30313706
Alignment:
| Q |
172 |
taccactaaggactacaaggatgaagtcggcatcagtgtggtgggggaggaagatggtgtggggttttgctctgtactccaaaagacggtagttttttaa |
271 |
Q |
| |
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|||||||||||||| |||| |||||||| |||||| |||| || || || |||| |||||| ||||| | || |||||||| || ||||||| | |
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| T |
30313895 |
taccactaaggactgcaagaatgaagtcagcatcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaaaagtcgatagttttggag |
30313796 |
T |
|
| Q |
272 |
attttcaaataagtttgaacgtttgtcaaacctttggatgagacgaatgtgaccattttcgttctcaaagagtgtttggaacctgttaga |
361 |
Q |
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||| ||||||| || |||||||||||||||||||||| || |||||||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
30313795 |
attctcaaatattttggaacgtttgtcaaacctttggagaagccgaatgtgaccattttcgttctcaaaaagagtttgaaacctgttaga |
30313706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 172 - 352
Target Start/End: Complemental strand, 30297845 - 30297665
Alignment:
| Q |
172 |
taccactaaggactacaaggatgaagtcggcatcagtgtggtgggggaggaagatggtgtggggttttgctctgtactccaaaagacggtagttttttaa |
271 |
Q |
| |
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|||||||||| ||| ||||||||||||| |||||| |||| || || || |||| ||||| ||||| | || |||||||| || ||||||| | |
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| T |
30297845 |
taccactaagcactgcaaggatgaagtcagcatcattgtgttgtggaagaaagagagtgtgaggtttggagtgatattccaaaaggcgatagttttgaag |
30297746 |
T |
|
| Q |
272 |
attttcaaataagtttgaacgtttgtcaaacctttggatgagacgaatgtgaccattttcgttctcaaagagtgtttggaa |
352 |
Q |
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||| ||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| |
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| T |
30297745 |
attctcaaatattttggaacgtttgtcaaacctttggaggagacgaatgtgaccattttcgttctcaaaaagagtttggaa |
30297665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 172 - 352
Target Start/End: Complemental strand, 30303031 - 30302851
Alignment:
| Q |
172 |
taccactaaggactacaaggatgaagtcggcatcagtgtggtgggggaggaagatggtgtggggttttgctctgtactccaaaagacggtagttttttaa |
271 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||| |||| || || || |||| ||||| ||||| | ||| |||||||| || ||||||| | |
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| T |
30303031 |
taccactaaggactgcaaggatgaagtcagcatcattgtgttgtggaagaaagagagtgtgaggtttggagtggtattccaaaaggcgatagttttggag |
30302932 |
T |
|
| Q |
272 |
attttcaaataagtttgaacgtttgtcaaacctttggatgagacgaatgtgaccattttcgttctcaaagagtgtttggaa |
352 |
Q |
| |
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||| ||||||| |||||||||||||| |||||||| | ||||||||||||||||||||| || ||||| || |||||||| |
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| T |
30302931 |
attctcaaatatttttgaacgtttgtcgaacctttgaaggagacgaatgtgaccattttcattttcaaaaagagtttggaa |
30302851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 172 - 352
Target Start/End: Complemental strand, 30290345 - 30290165
Alignment:
| Q |
172 |
taccactaaggactacaaggatgaagtcggcatcagtgtggtgggggaggaagatggtgtggggttttgctctgtactccaaaagacggtagttttttaa |
271 |
Q |
| |
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|||||||||| ||| ||||||| ||||| |||||| |||| || || || |||| |||||| ||||| | || ||||||||||||||||||| | |
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| T |
30290345 |
taccactaagcactgcaaggataaagtcagcatcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaaaagacggtagttttggag |
30290246 |
T |
|
| Q |
272 |
attttcaaataagtttgaacgtttgtcaaacctttggatgagacgaatgtgaccattttcgttctcaaagagtgtttggaa |
352 |
Q |
| |
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||||||||||| || || |||||||| || ||||| | |||||||||||||||||||||||| ||||| || |||||||| |
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| T |
30290245 |
attttcaaatattttggagcgtttgtcgaatctttgaaggagacgaatgtgaccattttcgttttcaaaaagagtttggaa |
30290165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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