View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_low_11 (Length: 526)
Name: NF5290_low_11
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 53309235 - 53309613
Alignment:
| Q |
1 |
gttattgcctatgaatccatggaaaatgatcttcttcttgctggtgatcttacctgtaagtaagcatcgatcttgttcatctctcaat----tatataaa |
96 |
Q |
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| T |
53309235 |
gttattgcctatgaagacatggagaatgatcttcttcttgctggtgatcttacctggaagtaagcatcgatcttgttcatctctcaattatatatataaa |
53309334 |
T |
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| Q |
97 |
tttctctcttccttaattaattattatgagctatttaatt--------------tgcttgagaaaaatatagcttctaaatgaaaaactatataatcagt |
182 |
Q |
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| T |
53309335 |
tttctctcttccttaattaattattatgagctatttaatttgcttgtttataaatgcttgagaaaaatatagcttctaaatgaaaaactatataatcagt |
53309434 |
T |
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| Q |
183 |
tgtcaatcatgccatataattcctgtnnnnnnnnnnnnnnnntcatgccatatataaatagttgaaaattttacgttactataatacttcagatcgtatt |
282 |
Q |
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| T |
53309435 |
tgtcaatcatgccatataattcctgtaaaaaaaataaaaaaatcatgcc--atataaatagttgaaaattttacgttactataatacttcagattgtatt |
53309532 |
T |
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| Q |
283 |
cttgt-nnnnnnnnntaaaataatacttcatattgtggcgggtgatggttccatccaaaccactttaatttttgtgttaac |
362 |
Q |
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| T |
53309533 |
cttgtcaaaaaaaattaaaataatacttcatattgtggtggctgatggttccatccaaaccactttaatttttgtgttaac |
53309613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 53309787 - 53309822
Alignment:
| Q |
360 |
aacataaattagaattgaaaacatatataaagagtc |
395 |
Q |
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| T |
53309787 |
aacataaattagaattgaaaacatatataaagagtc |
53309822 |
T |
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