View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5290_low_12 (Length: 514)
Name: NF5290_low_12
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 15 - 512
Target Start/End: Complemental strand, 8124176 - 8123679
Alignment:
| Q |
15 |
aatataatcaatggttactatatagtacttatttgctataggtaaagtagaaagtacatgtatatacttttctgtaaaatatgcaagtggagctagaaga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8124176 |
aatataatcaatggttactatatagtacttatttgctataggtaaagtagaaagtacatgtatatacttttctgtaaaatatgcaagtggagctagaaga |
8124077 |
T |
|
| Q |
115 |
atgaaagcagtgatgtttctatagacaggaaaaacaagcttgctgactcctgtattaagggcaattctgagaaatatatgatttcctgcatgacaaaatt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8124076 |
atgaaagcagtgatgtttctatagacaggaaaaacaagcttgctgactcctgtattaagtgcaattctgagaaatatatgatttcctgcatgacaaaatt |
8123977 |
T |
|
| Q |
215 |
gtaaaaaagttaaagctatgtgaagcttagctcgttcagaaaccatattcttttgaattgtgttgatatggatccacttagataagtagatgttgaccaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8123976 |
gtaaaaaagttaaagctatgtgaagcttagctcgttcagaaaccatattcttttgaattgtgttgatatggatccacttagagaagtagatgttgaccaa |
8123877 |
T |
|
| Q |
315 |
gagaaaattgggaaagaaatatctgctgaaagatagagagatctattctaattgtggaaattaaaatgataaaaacaaaaagacaggtttgatatgtttt |
414 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8123876 |
gagaaaattgggaaaataatatctgctgaaagatagagagatctattctaattgtggaaattaaaatgataaaaacaaaaagacaagtttgatatgtttt |
8123777 |
T |
|
| Q |
415 |
ttaaggattgtgtgtgattatgaaatactaggattattgtcgttatctgattggatctcaaatttttatattctatgatgtctttggaaataatatat |
512 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8123776 |
ttaaggattgtgtgtgattatgaactactaggattattgtcgttatctgattggatctcaaatttttatattctatgatgtctttggaaataatatat |
8123679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 7370233 - 7370279
Alignment:
| Q |
118 |
aaagcagtgatgtttctatagacaggaaaaacaagcttgctgactcc |
164 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
7370233 |
aaagcaatgatgtttctatagacagggaaaacaagtttgctaactcc |
7370279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University