View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5290_low_13 (Length: 488)

Name: NF5290_low_13
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5290_low_13
NF5290_low_13
[»] chr5 (5 HSPs)
chr5 (19-468)||(8123228-8123688)
chr5 (185-396)||(671328-671549)
chr5 (332-457)||(41709523-41709649)
chr5 (309-457)||(24108697-24108847)
chr5 (185-266)||(41709389-41709470)
[»] chr7 (11 HSPs)
chr7 (183-457)||(42513063-42513348)
chr7 (185-383)||(38572287-38572495)
chr7 (309-457)||(30456307-30456455)
chr7 (280-379)||(41712265-41712364)
chr7 (337-448)||(11206499-11206611)
chr7 (309-457)||(30452702-30452846)
chr7 (286-457)||(49017104-49017276)
chr7 (200-318)||(3219980-3220098)
chr7 (335-390)||(6102928-6102983)
chr7 (284-352)||(2534598-2534666)
chr7 (186-266)||(11205731-11205811)
[»] chr3 (8 HSPs)
chr3 (185-457)||(36326368-36326639)
chr3 (184-398)||(30911920-30912144)
chr3 (185-389)||(55211759-55211968)
chr3 (259-390)||(32414686-32414821)
chr3 (309-449)||(14029318-14029468)
chr3 (323-412)||(33328218-33328306)
chr3 (185-268)||(14029173-14029256)
chr3 (185-231)||(32414502-32414548)
[»] chr6 (7 HSPs)
chr6 (185-457)||(7415505-7415788)
chr6 (191-457)||(4834589-4834868)
chr6 (185-457)||(33242716-33242997)
chr6 (196-457)||(7422524-7422796)
chr6 (196-457)||(7426463-7426735)
chr6 (184-266)||(13886453-13886535)
chr6 (358-457)||(13886590-13886690)
[»] chr1 (8 HSPs)
chr1 (185-457)||(18583887-18584170)
chr1 (309-457)||(23405476-23405625)
chr1 (183-303)||(13087571-13087700)
chr1 (185-260)||(21076184-21076259)
chr1 (365-457)||(21075942-21076035)
chr1 (366-396)||(9893800-9893830)
chr1 (310-352)||(24618439-24618481)
chr1 (186-266)||(23405689-23405769)
[»] chr8 (5 HSPs)
chr8 (313-457)||(44765278-44765423)
chr8 (313-457)||(44761971-44762116)
chr8 (184-266)||(44765128-44765210)
chr8 (185-266)||(44761823-44761904)
chr8 (184-236)||(24249049-24249101)
[»] chr2 (6 HSPs)
chr2 (272-351)||(31211652-31211731)
chr2 (309-389)||(45327474-45327554)
chr2 (358-457)||(31211862-31211962)
chr2 (184-268)||(4472701-4472785)
chr2 (309-352)||(40401005-40401048)
chr2 (228-268)||(31211598-31211638)
[»] chr4 (6 HSPs)
chr4 (219-349)||(20441029-20441168)
chr4 (309-457)||(27387620-27387769)
chr4 (184-266)||(36050518-36050600)
chr4 (184-266)||(36053777-36053859)
chr4 (327-457)||(55322335-55322467)
chr4 (335-396)||(24733642-24733703)


Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Original strand, 8123228 - 8123688
Alignment:
Q  19 atgttaccaacgcatgctattatagagctgcttattagcaatcttcctttcacatgacaaatctagacattcaagatcaaacatatatcttcacttaggt 118  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8123228 atgttaccaatgcatgctattatagagctgcttattagcaatcttcctttcacatgacaaatctagccattcaagatcaaacatatatcttcacttaggt 8123327  T
Q  119 cttaccaaaaaatttcagatttatttacgtttatgaaccgctctaaaatgacatcacagagatatatgataggatatttagaataaggagcactaatgtg 218  Q
    || |||||||||||||||||||||| | ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  8123328 ctcaccaaaaaatttcagatttattaaagtttatgaaccgctctaaaataacattacagagatatatgataggatatttagaataaggagcactaatctg 8123427  T
Q  219 gtgactcatctagttctaaaagttattatgactcaccttaatctagaagg----------tcgattgttaggggataatattgagtatgttagggtacac 308  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||          || |||||||||||||||||||||||||||||||||||||    
T  8123428 gtgactcatctagttctagaagttattatgactgaccttaatctagaaggatctagaagatctattgttaggggataatattgagtatgttagggtacac 8123527  T
Q  309 ttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatgaattttctttctcttttcattagt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  8123528 ttatcttattatgagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttctcttttctttaat 8123627  T
Q  409 ttctccctctaattcctggagtgt-aaccctactcgaattggatcgtatcgatatattatt 468  Q
    |||||||||||||| ||| ||||| | || |||||||||||| ||||||| ||||||||||    
T  8123628 ttctccctctaatttctgaagtgtgatccatactcgaattgggtcgtatcaatatattatt 8123688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 185 - 396
Target Start/End: Original strand, 671328 - 671549
Alignment:
Q  185 tgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaagg----------tcgatt 274  Q
    |||||||||||||||||||||||||| |||| | |||||||  ||| ||||| | |||||||||||||||||||||||||||||          |  |||    
T  671328 tgataggatatttagaataaggagcattaatatagtgactcggctaattctagatgttattatgactcaccttaatctagaaggatccataagatatatt 671427  T
Q  275 gttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaa 374  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||  || |||||||||| ||||||    
T  671428 gttaggggataatattgagtaggttagggtacacttatcttattatgagtatgcacaagtttatataatcattgtatgccttattatgagaattaatgaa 671527  T
Q  375 aaatataatgaattttctttct 396  Q
    ||||||||||||||||||||||    
T  671528 aaatataatgaattttctttct 671549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 332 - 457
Target Start/End: Original strand, 41709523 - 41709649
Alignment:
Q  332 agtctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatgaattttctttctcttttcattagtttctccctctaattcctggagtg 431  Q
    ||||||||||| |||||||||  || |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| | ||||||||    
T  41709523 agtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctatagtttctccctctaaattctggagtg 41709622  T
Q  432 t-aaccctactcgaattggatcgtatc 457  Q
    | | | ||||||||||||| |||||||    
T  41709623 tgatctctactcgaattgggtcgtatc 41709649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 457
Target Start/End: Original strand, 24108697 - 24108847
Alignment:
Q  309 ttatcttattatgagtatgca-caagtctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatgaattttctttctcttttcattag 407  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| || | || |||| |||||||||||||||||||||| ||||   || ||  |||    
T  24108697 ttattttattatgagtatgcaacaagtctatataagcattgtatgtcttatgattagaaccaatgaaaaatataatgaatttccttttgtttgtctctag 24108796  T
Q  408 -tttctccctctaattcctggagtgt-aaccctactcgaattggatcgtatc 457  Q
     ||||| ||| ||||| ||||||||| | ||||||||||||||| |||||||    
T  24108797 ttttcttcct-taatttctggagtgtgatccctactcgaattgggtcgtatc 24108847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 41709389 - 41709470
Alignment:
Q  185 tgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaa 266  Q
    ||||||||||| |||||||||||  |  ||||||||||||| |||||||||| ||| || ||||||||| ||||||||||||    
T  41709389 tgataggatatctagaataaggaatataaatgtggtgactcctctagttctagaaggtagtatgactcatcttaatctagaa 41709470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 183 - 457
Target Start/End: Complemental strand, 42513348 - 42513063
Alignment:
Q  183 tatgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaagg----------tcga 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||          || |    
T  42513348 tatgataggatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgactcaccttaatctagaaggatctagaaggtcta 42513249  T
Q  273 ttgttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatg 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  42513248 ttgttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatg 42513149  T
Q  373 aaaaatataatgaattttctttctcttttcattagtttctccctctaattcctggagtgt-aaccctactcgaattggatcgtatc 457  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||| | ||||||||||||||| |||||||    
T  42513148 aaaaatataatgaattttctttctcttttctctagtttctccctctaatttctggagtgtgatccctactcgaattgggtcgtatc 42513063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 185 - 383
Target Start/End: Complemental strand, 38572495 - 38572287
Alignment:
Q  185 tgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatcta----------gaaggtcgatt 274  Q
    |||||| ||||||||||||| ||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||          ||||||   ||    
T  38572495 tgatagtatatttagaataatgagtactaatgtgctgactcagctagttctagaagttattatgactcaccttaatctaaaaggatctagaaggtatctt 38572396  T
Q  275 gttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaa 374  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||  || |||||||||| ||| ||    
T  38572395 gttaggggataatattgagtaagttagggtacacttatcttattatgaatatgcccaagtctatataaacattgtatgccttattatgagaattaataaa 38572296  T
Q  375 aaatataat 383  Q
    |||||||||    
T  38572295 aaatataat 38572287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 309 - 457
Target Start/End: Original strand, 30456307 - 30456455
Alignment:
Q  309 ttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatgaattttctttctcttttcattagt 408  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||  || | || ||||  ||||||||||||||||||||||||||||||||||  ||||    
T  30456307 ttatcttattatgagtatgca-aagtctatataagcattatatgccttatgattagaacgaatgaaaaatataatgaattttctttctcttttctctagt 30456405  T
Q  409 ttctccctctaattcctggagtgt-aaccctactcgaattggatcgtatc 457  Q
    |||||||||||| | ||||||||| | ||||||||||||||| |||||||    
T  30456406 ttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatc 30456455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 280 - 379
Target Start/End: Original strand, 41712265 - 41712364
Alignment:
Q  280 gggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaaaaata 379  Q
    ||||||||||| ||||||||||||| ||||||| |||||||||||| ||||||||||||||||| ||||||||| || |||||||||| |||||||||||    
T  41712265 gggataatattaagtatgttagggtgcacttattttattatgagtaggcacaagtctatataagtattgtatgtcttattatgagaatgaatgaaaaata 41712364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 337 - 448
Target Start/End: Original strand, 11206499 - 11206611
Alignment:
Q  337 atataagcattgtatgttttgttatgagaatcaatgaaaaatataatgaattttctttctcttttcattagtttctccctctaattcctggagtgt-aac 435  Q
    |||||| |||||||||  || |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| | ||||||||| | |    
T  11206499 atataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaaattctggagtgtgatc 11206598  T
Q  436 cctactcgaattg 448  Q
     ||||||||||||    
T  11206599 tctactcgaattg 11206611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 309 - 457
Target Start/End: Original strand, 30452702 - 30452846
Alignment:
Q  309 ttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatgaattttctttctcttttcattagt 408  Q
    ||||||||||||||||||||| |||||||||||    |||||||  || | || ||||  ||||||||||||||||||||||||||||||||||  ||||    
T  30452702 ttatcttattatgagtatgca-aagtctatata----ttgtatgccttatgattagaacgaatgaaaaatataatgaattttctttctcttttctctagt 30452796  T
Q  409 ttctccctctaattcctggagtgt-aaccctactcgaattggatcgtatc 457  Q
    |||||||||||| | ||||||||| | ||||||||||||||| |||||||    
T  30452797 ttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatc 30452846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 286 - 457
Target Start/End: Original strand, 49017104 - 49017276
Alignment:
Q  286 atattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatga 385  Q
    ||||||||||||||| | | ||||||||||||||||| ||| ||||||| | |||||||||||||||  || |||||||| | |||||||||||||||      
T  49017104 atattgagtatgttatgatgcacttatcttattatgactatccacaagtttgtataagcattgtatgccttattatgagacttaatgaaaaatataatat 49017203  T
Q  386 attttctttctcttttcattagtttctccctctaattcctggagtgt-aaccctactcgaattggatcgtatc 457  Q
    ||||||||||| || ||  ||||||||| ||||||||  |||||||| | ||||| ||||||| | |||||||    
T  49017204 attttctttcttttatctctagtttctctctctaatttatggagtgtgatccctattcgaattaggtcgtatc 49017276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 318
Target Start/End: Complemental strand, 3220098 - 3219980
Alignment:
Q  200 aataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaagg-tcgattgttaggggataatattgagtatgt 298  Q
    ||||||||||||| || | ||||||||||| ||||||||||  |  | | ||||||||||||||||||| || | || |||||  ||||||||| |||||    
T  3220098 aataaggagcactcatatcgtgactcatctggttctaaaagcaaagacggctcaccttaatctagaaggatctactg-tagggagtaatattgaatatgt 3220000  T
Q  299 tagggtacacttatcttatt 318  Q
    | |||||||||| |||||||    
T  3219999 ttgggtacacttgtcttatt 3219980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 6102928 - 6102983
Alignment:
Q  335 ctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatgaatttt 390  Q
    ||||||||||||||||| |||  | || ||||||||||||||||||||||||||||    
T  6102928 ctatataagcattgtatctttcatgattagaatcaatgaaaaatataatgaatttt 6102983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 2534666 - 2534598
Alignment:
Q  284 taatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatg 352  Q
    ||||||||||||||||||||| ||||| ||||||| || ||||| |   | ||||||||||||||||||    
T  2534666 taatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatg 2534598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 11205731 - 11205811
Alignment:
Q  186 gataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaa 266  Q
    |||||||||| ||||||| |||  |  |||||||||||||  ||||||||| ||  || ||||||||| ||||||||||||    
T  11205731 gataggatatctagaatatggaatataaatgtggtgactctcctagttctagaaagtagtatgactcatcttaatctagaa 11205811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 185 - 457
Target Start/End: Original strand, 36326368 - 36326639
Alignment:
Q  185 tgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaaggtcgattgttaggggat 284  Q
    |||||| ||||||||||||| ||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||   ||||||||||||    
T  36326368 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaaggtatcttgttaggggat 36326467  T
Q  285 aatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatg 384  Q
     ||||||||||||||||||| ||||||  ||||||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  36326468 gatattgagtatgttagggtgcacttaggttattatgagtatg--caagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatg 36326565  T
Q  385 aattttctttctcttttcattagtttctccctctaattcctggagtgt-aaccctactcgaattggatcgtatc 457  Q
    ||||||||||||||||||  |||||||||||||||| | ||||||||| | ||||||||||||||| |||||||    
T  36326566 aattttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatc 36326639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 184 - 398
Target Start/End: Original strand, 30911920 - 30912144
Alignment:
Q  184 atgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaagg-tcga---------t 273  Q
    ||||||||||| ||||||||| ||| ||||||||| ||||||   |||||||| ||||||||||||||||||||||||||||||| || |         |    
T  30911920 atgataggatacttagaataatgagtactaatgtgatgactcggttagttctagaagttattatgactcaccttaatctagaaggatctaaaatatatct 30912019  T
Q  274 tgttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatga 373  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||  || ||||||||||||||||    
T  30912020 tgttaggggataatattgagtatgttagggtgcacttattttattgtgagtatgcacaagtctatataagtattgtatgccttattatgagaatcaatga 30912119  T
Q  374 aaaatataatgaattttctttctct 398  Q
    |||||||||||||||||||||||||    
T  30912120 aaaatataatgaattttctttctct 30912144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 185 - 389
Target Start/End: Complemental strand, 55211968 - 55211759
Alignment:
Q  185 tgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaagg----------tcgatt 274  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||| | |||||| ||||||||| ||||          |  |||    
T  55211968 tgataggatatttagaataaggagcactaatgtggcgactcggctagttctaaaagttatcacgactcatcttaatctaaaaggatccataaggtatatt 55211869  T
Q  275 gttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaa 374  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||     |||||||  || |||||||||||||||||    
T  55211868 ggtaggggataatattgagtatgttagggtgcacttatcttattatgaatatgcacaagtctatat-----ttgtatgccttattatgagaatcaatgaa 55211774  T
Q  375 aaatataatgaattt 389  Q
    |||||||||||||||    
T  55211773 aaatataatgaattt 55211759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 259 - 390
Target Start/End: Original strand, 32414686 - 32414821
Alignment:
Q  259 atctagaaggtcgattgttaggggataatattgagtatgttagggtacacttatcttattatgagtatgc----acaagtctatataagcattgtatgtt 354  Q
    |||||||||||  |||||  |||||||||||| ||||||||| ||| ||||||||||||| ||||| |||    |||||||||||||| |||||||||      
T  32414686 atctagaaggtatattgtctggggataatattaagtatgttatggtgcacttatcttattttgagtttgcacaaacaagtctatataaacattgtatgcc 32414785  T
Q  355 ttgttatgagaatcaatgaaaaatataatgaatttt 390  Q
    || ||| |||||||||| ||||||||||||| ||||    
T  32414786 ttattacgagaatcaataaaaaatataatgattttt 32414821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 449
Target Start/End: Original strand, 14029318 - 14029468
Alignment:
Q  309 ttatcttattatgagtatgcacaagtctatataagcattgtatgttttgt----ta-----tgagaatcaatgaaaaatataatgaattttctttctctt 399  Q
    ||||||||| ||||||||||||||| |||||||| |||| ||||| ||||    ||     | ||||||||||||||||||||||||||| |||||| ||    
T  14029318 ttatcttataatgagtatgcacaagcctatataaacattatatgtcttgtggattagaaatttagaatcaatgaaaaatataatgaatttcctttctttt 14029417  T
Q  400 ttcattagtttctccctctaattcctggagtgt-aaccctactcgaattgg 449  Q
     ||  ||||||||| |||||| | ||||||||| | |||||||||||||||    
T  14029418 atctctagtttctcactctaaattctggagtgtgatccctactcgaattgg 14029468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 33328218 - 33328306
Alignment:
Q  323 gtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatgaattttctttctcttttcattagtttct 412  Q
    ||||||| |||||| ||||||||||||||| ||| | || |||| |||||||| ||||||| ||||| |||||| ||||| |||||||||    
T  33328218 gtatgcataagtctgtataagcattgtatgctttataattagaaccaatgaaagatataatcaatttcctttcttttttc-ttagtttct 33328306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 14029173 - 14029256
Alignment:
Q  185 tgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaagg 268  Q
    ||||| ||||||||||||||| ||||| |||| ||||||||  ||||||||| ||| ||  |||| ||| ||||||||||||||    
T  14029173 tgataagatatttagaataagaagcacaaatgcggtgactcggctagttctagaaggtagaatgaatcatcttaatctagaagg 14029256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 32414502 - 32414548
Alignment:
Q  185 tgataggatatttagaataaggagcactaatgtggtgactcatctag 231  Q
    |||||||||| |||||||||||| || ||||||||||||||| ||||    
T  32414502 tgataggatagttagaataaggaacattaatgtggtgactcagctag 32414548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 185 - 457
Target Start/End: Original strand, 7415505 - 7415788
Alignment:
Q  185 tgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaagg---tcga-------tt 274  Q
    ||||||| || ||||||||| ||| ||||||||||||||||| ||||||||| ||  |||||||||||| |||||| |||||||   | ||       ||    
T  7415505 tgatagggtacttagaataatgagtactaatgtggtgactcagctagttctagaaaatattatgactcatcttaatttagaaggatctagaaattatctt 7415604  T
Q  275 gttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaa 374  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||  || ||||||||||||||||||||||  || |||||||||||||||||    
T  7415605 gttaggggataatattgagtatgttatggtgcacttatcttattatgagtacacataagtctatataagcattgtatgccttattatgagaatcaatgaa 7415704  T
Q  375 aaatataatgaattttctttctcttttcattagtttctccctctaattcctggagtgt-aaccctactcgaattggatcgtatc 457  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||| ||||||||| | |||||||| | ||||||||||||    
T  7415705 aaatataatgaattttctttctcttttctctagtttctctctctaatttctggagtgtgatccctactcaagttggatcgtatc 7415788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 191 - 457
Target Start/End: Original strand, 4834589 - 4834868
Alignment:
Q  191 gatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaagg-tcga-----------ttgtta 278  Q
    |||||||||||||| ||  || ||||||||||||||   ||||||| ||||||||||||||||||||||||||||||| || |           || |||    
T  4834589 gatatttagaataatgactacgaatgtggtgactcagtaagttctagaagttattatgactcaccttaatctagaaggatctaaaaggagtatcttatta 4834688  T
Q  279 ggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaaaaat 378  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||  |  |||| ||||||||||||||||    
T  4834689 ggggataatattgagtatgttagggtgcacttatcttattatgagtatgcataagtctatataagcattgtatgcctcattattagaatcaatgaaaaat 4834788  T
Q  379 ataatgaattttctttctcttttcattagtttctccctctaattcctggagtgt-aaccctactcgaattggatcgtatc 457  Q
    ||||||||||||||||||||||||  |||||||||||||||| | ||||||||| | |||||||| |||||| |||||||    
T  4834789 ataatgaattttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcaaattgggtcgtatc 4834868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 185 - 457
Target Start/End: Original strand, 33242716 - 33242997
Alignment:
Q  185 tgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaagg---tcga-------tt 274  Q
    |||||||||||| |||||||||||||||||| |||||||||| ||||||||| ||||| |||||| ||| |||| |||| ||||   | ||       ||    
T  33242716 tgataggatatt-agaataaggagcactaatatggtgactcagctagttctagaagttgttatgagtcatcttagtctataaggatttagaagacatatt 33242814  T
Q  275 gttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaa 374  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||    
T  33242815 gttaggggataatattgagtatgttagg-tgcacttatcttattatgagtatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaa 33242913  T
Q  375 aaatataatgaattttctttctcttttcattagtttctccctctaattcctggagtgt-aaccctactcgaattggatcgtatc 457  Q
    |||||||||||||||  ||||| || |   ||||||||| |||||||| ||||||||| | | ||||||||||||| |||||||    
T  33242914 aaatataatgaatttcttttcttttatttctagtttctctctctaatttctggagtgtgatctctactcgaattgggtcgtatc 33242997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 196 - 457
Target Start/End: Original strand, 7422524 - 7422796
Alignment:
Q  196 ttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaagg---tcga-------ttgttaggggata 285  Q
    ||||||||| ||| ||||||||||||||| | ||||||||| ||  |||||||| ||| |||||| |||||||   | ||       |||||||||||||    
T  7422524 ttagaataatgagtactaatgtggtgacttagctagttctagaaaatattatgaatcatcttaatttagaaggatctagaagttatcttgttaggggata 7422623  T
Q  286 atattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatga 385  Q
    | ||||||||||||| ||| |||||||||||||| |||||  || ||||||||||||||||||||||  || ||||||||||||||||||||||||||||    
T  7422624 acattgagtatgttatggtgcacttatcttattaagagtacacataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatga 7422723  T
Q  386 attttctttctcttttcattagtttctccctctaattcctggagtgt-aaccctactcgaattggatcgtatc 457  Q
    |||||||||||||||||  ||||||||| |||||||| || |||||| | ||||||||||||||| |||||||    
T  7422724 attttctttctcttttctctagtttctctctctaatttcttgagtgtgatccctactcgaattgggtcgtatc 7422796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 196 - 457
Target Start/End: Original strand, 7426463 - 7426735
Alignment:
Q  196 ttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaagg---tcga-------ttgttaggggata 285  Q
    ||||||||| ||| | ||||||||||||||| ||||||||| ||  |||||| ||||| |||||||||| |||   | ||       |||||||||||||    
T  7426463 ttagaataatgagtattaatgtggtgactcagctagttctagaaaatattataactcatcttaatctagtaggatctagaagttatcttgttaggggata 7426562  T
Q  286 atattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatga 385  Q
    ||||||||||||||| ||| |||||||||||||| |||||  || |||||||||||| |||||||||  || ||||||||||||||||||||||||||||    
T  7426563 atattgagtatgttatggtgcacttatcttattaagagtacacataagtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatga 7426662  T
Q  386 attttctttctcttttcattagtttctccctctaattcctggagtgt-aaccctactcgaattggatcgtatc 457  Q
    |||||||||||||||||  || ||||||  ||||||| ||||||||| | ||||||||||||||| |||||||    
T  7426663 attttctttctcttttctctaatttctctttctaatttctggagtgtgatccctactcgaattgggtcgtatc 7426735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 13886453 - 13886535
Alignment:
Q  184 atgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaa 266  Q
    ||||||||||| ||||||||||||||||||||||||||||||  ||||||||| || ||||||||||||||||||||||||||    
T  13886453 atgataggatagttagaataaggagcactaatgtggtgactctgctagttctataaattattatgactcaccttaatctagaa 13886535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 358 - 457
Target Start/End: Original strand, 13886590 - 13886690
Alignment:
Q  358 ttatgagaatcaatgaaaaatataatgaattttctttctcttttcattagtttctccctctaattcctggagtgt-aaccctactcgaattggatcgtat 456  Q
    |||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| | ||||||||| | |||||||| |||||| ||||||    
T  13886590 ttattagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcaaattgggtcgtat 13886689  T
Q  457 c 457  Q
    |    
T  13886690 c 13886690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 185 - 457
Target Start/End: Complemental strand, 18584170 - 18583887
Alignment:
Q  185 tgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaagg----------tcgatt 274  Q
    |||||||||||||||||||||||||| |||||||||| || | |||||| ||||||||||||||||||||||||||||||||||          |  |||    
T  18584170 tgataggatatttagaataaggagcattaatgtggtggcttagctagttataaaagttattatgactcaccttaatctagaaggatctaaaaggtatatt 18584071  T
Q  275 gttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaa 374  Q
     ||||||||||||||||||||||||||||| || ||||| |||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  18584070 attaggggataatattgagtatgttagggtgcagttatcgtattataagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaa 18583971  T
Q  375 aaatataatgaattttctttctcttttcattag-tttctccctctaattcctggagtgtaa-ccctactcgaattggatcgtatc 457  Q
    ||||||| ||||||| |||||| || ||  ||| |||||| || ||||| ||||||||||| | ||||||||||||| |||||||    
T  18583970 aaatatactgaatttcctttcttttatctctagttttctctct-taatttctggagtgtaatctctactcgaattgggtcgtatc 18583887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 309 - 457
Target Start/End: Complemental strand, 23405625 - 23405476
Alignment:
Q  309 ttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatgaattttctttctcttttcattagt 408  Q
    |||||||| |||| |||||||||||||||| ||| |||||||||  || |||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  23405625 ttatcttactatgtgtatgcacaagtctatctaaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagt 23405526  T
Q  409 ttctccctctaattcctggagtgt-aaccctactcgaattggatcgtatc 457  Q
    |||||||||||| | ||||||||| | ||||||| ||||||| |||||||    
T  23405525 ttctccctctaaattctggagtgtgatccctacttgaattgggtcgtatc 23405476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 183 - 303
Target Start/End: Original strand, 13087571 - 13087700
Alignment:
Q  183 tatgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcacctta---------atctagaaggtcgat 273  Q
    |||||||||||||| ||||||||||||| ||||||||||||||  ||||||||| |||||||||||||||||||||         |||||||||||  ||    
T  13087571 tatgataggatattcagaataaggagcattaatgtggtgactcggctagttctagaagttattatgactcaccttaatctagacgatctagaaggtatat 13087670  T
Q  274 tgttaggggataatattgagtatgttaggg 303  Q
    |||||||||||||||| |||||||||||||    
T  13087671 tgttaggggataatatcgagtatgttaggg 13087700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 21076259 - 21076184
Alignment:
Q  185 tgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaat 260  Q
    |||||||||  ||||||||||||| ||||||||||||||||| ||||||||| |||  | ||||| ||||||||||    
T  21076259 tgataggatggttagaataaggagtactaatgtggtgactcacctagttctagaagcaaatatgattcaccttaat 21076184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 457
Target Start/End: Complemental strand, 21076035 - 21075942
Alignment:
Q  365 aatcaatgaaaaatataatgaattttctttctcttttcattagtttctccctctaattcctggagtgt-aaccctactcgaattggatcgtatc 457  Q
    ||||||||||||||||| ||||||| |||||| || ||  ||||||||| | |||| | ||||||||| | ||||||||||||| |||||||||    
T  21076035 aatcaatgaaaaatatagtgaatttcctttcttttatctgtagtttctctcgctaaattctggagtgtcatccctactcgaatttgatcgtatc 21075942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 396
Target Start/End: Original strand, 9893800 - 9893830
Alignment:
Q  366 atcaatgaaaaatataatgaattttctttct 396  Q
    |||||||||||||||||||||||||||||||    
T  9893800 atcaatgaaaaatataatgaattttctttct 9893830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 24618481 - 24618439
Alignment:
Q  310 tatcttattatgagtatgcacaagtctatataagcattgtatg 352  Q
    |||||||||||||||||| | ||||||||||||| ||||||||    
T  24618481 tatcttattatgagtatgtataagtctatataagaattgtatg 24618439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 23405769 - 23405689
Alignment:
Q  186 gataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaa 266  Q
    |||||||||| |||||||||||  |  ||| || ||||||  ||||||||| ||| || ||||||||| ||||||||||||    
T  23405769 gataggatatctagaataaggaatataaatatgatgactcccctagttctagaaggtagtatgactcatcttaatctagaa 23405689  T

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Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 313 - 457
Target Start/End: Original strand, 44765278 - 44765423
Alignment:
Q  313 cttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatgaattttctttctcttttcattagtttct 412  Q
    |||| |||| |||||||||||||||||||| ||||||||   || |||||| ||||||||||||||||||||||||||||||||||||||  ||||||||    
T  44765278 cttactatgtgtatgcacaagtctatataaacattgtattccttattatgaaaatcaatgaaaaatataatgaattttctttctcttttctatagtttct 44765377  T
Q  413 ccctctaattcctggagtgtaa-ccctactcgaattggatcgtatc 457  Q
    |||||||| | ||||||||||| ||||||||||||||| |||||||    
T  44765378 ccctctaaattctggagtgtaatccctactcgaattgggtcgtatc 44765423  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 313 - 457
Target Start/End: Original strand, 44761971 - 44762116
Alignment:
Q  313 cttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatgaattttctttctcttttcattagtttct 412  Q
    |||| |||| |||||||||||||||||||| |||||||||  || |||||| |||||||||||||||||||||||||| |||||||||||  ||||||||    
T  44761971 cttactatgtgtatgcacaagtctatataaacattgtatgccttattatgaaaatcaatgaaaaatataatgaattttttttctcttttctatagtttct 44762070  T
Q  413 ccctctaattcctggagtgt-aaccctactcgaattggatcgtatc 457  Q
    |||||||| | ||||||||| | ||||||||||||||| |||||||    
T  44762071 ccctctaaattctggagtgtgatccctactcgaattgggtcgtatc 44762116  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 44765128 - 44765210
Alignment:
Q  184 atgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaa 266  Q
    |||||||||||| |||||||||||  |  |||||||||||||  ||||||||| ||| || ||||||||| ||||||||||||    
T  44765128 atgataggatatctagaataaggaatataaatgtggtgactcccctagttctagaaggtagtatgactcatcttaatctagaa 44765210  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 44761823 - 44761904
Alignment:
Q  185 tgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaa 266  Q
    ||||||||||| |||||||||||  |  |||||||||||||  ||||||||| ||| || | ||||||| ||||||||||||    
T  44761823 tgataggatatctagaataaggaatataaatgtggtgactcccctagttctagaaggtagtttgactcatcttaatctagaa 44761904  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 24249049 - 24249101
Alignment:
Q  184 atgataggatatttagaataaggagcactaatgtggtgactcatctagttcta 236  Q
    ||||||||||||| | ||||||||||||| ||||||||| || ||||||||||    
T  24249049 atgataggatattcaaaataaggagcactcatgtggtgattcgtctagttcta 24249101  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 272 - 351
Target Start/End: Original strand, 31211652 - 31211731
Alignment:
Q  272 attgttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtat 351  Q
    |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| ||||||||||||| |||||||    
T  31211652 attgttaggggataatattgagtatgttagagtgcacttatcttaatatgagtatgcataagtctatataagtattgtat 31211731  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 45327554 - 45327474
Alignment:
Q  309 ttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatgaattt 389  Q
    |||||||| |||| ||||||||||||||||||||||||||||||| || |||||||||  ||||||||||||||| |||||    
T  45327554 ttatcttactatgtgtatgcacaagtctatataagcattgtatgtcttattatgagaaaaaatgaaaaatataataaattt 45327474  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 457
Target Start/End: Original strand, 31211862 - 31211962
Alignment:
Q  358 ttatgagaatcaatgaaaaatataatgaattttctttctcttttcattag-tttctccctctaattcctggagtgt-aaccctactcgaattggatcgta 455  Q
    ||||||||||||||||||||||||||||||||||||||| || ||  ||| |||||| || ||||| ||||||||| | |||||||||||||||||||||    
T  31211862 ttatgagaatcaatgaaaaatataatgaattttctttcttttatctctagttttctctct-taatttctggagtgtgatccctactcgaattggatcgta 31211960  T
Q  456 tc 457  Q
    ||    
T  31211961 tc 31211962  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 4472701 - 4472785
Alignment:
Q  184 atgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaagg 268  Q
    ||||||||||| ||| ||||||||||| | || |||||||||| ||||||||| |||  |  |||| ||||||||||||||||||    
T  4472701 atgataggatagttaaaataaggagcatttatatggtgactcacctagttctagaagcaaagatgattcaccttaatctagaagg 4472785  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 40401048 - 40401005
Alignment:
Q  309 ttatcttattatgagtatgcacaagtctatataagcattgtatg 352  Q
    ||||||||| |||||||||||||||||||| ||||||| |||||    
T  40401048 ttatcttatcatgagtatgcacaagtctatttaagcatagtatg 40401005  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 31211598 - 31211638
Alignment:
Q  228 ctagttctaaaagttattatgactcaccttaatctagaagg 268  Q
    ||||||||| ||||| ||||||||||| |||||||||||||    
T  31211598 ctagttctagaagttgttatgactcactttaatctagaagg 31211638  T

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Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 219 - 349
Target Start/End: Complemental strand, 20441168 - 20441029
Alignment:
Q  219 gtgactcatctagttctaaaagttattatgactcaccttaatctagaaggtcga---------ttgttaggggataatattgagtatgttagggtacact 309  Q
    ||||| || ||||||||| ||||| ||||||||||||||||| |||||| || |         |||||| |||||||||||||| |||| ||||| ||||    
T  20441168 gtgacgcagctagttctagaagttgttatgactcaccttaatttagaagatctaaaaagtatattgttaagggataatattgagcatgtcagggtgcact 20441069  T
Q  310 tatcttattatgagtatgcacaagtctatataagcattgt 349  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  20441068 tatcttattatgagtatgcacaagtctgtacaagcattgt 20441029  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 309 - 457
Target Start/End: Original strand, 27387620 - 27387769
Alignment:
Q  309 ttatcttattatgagtatgcacaagtctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatgaattttctttctcttttcattagt 408  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||  |  |||| || |  |||||||||||||||||||||  ||||  |  ||  ||||    
T  27387620 ttatcttattacgaggatgcacaagtctatataagcattgtatgcctcattattagcaggaatgaaaaatataatgaatttcttttccttcatctctagt 27387719  T
Q  409 ttctccctctaattcctggagtgt-aaccctactcgaattggatcgtatc 457  Q
    |||||||||||| | ||||||||| | ||||||||||||||| |||||||    
T  27387720 ttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatc 27387769  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 36050518 - 36050600
Alignment:
Q  184 atgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaa 266  Q
    ||||||||||||||||||||| ||| ||||||||||||||||  ||||||||| ||| || ||||||||| ||||||||||||    
T  36050518 atgataggatatttagaataatgagtactaatgtggtgactcccctagttctagaaggtagtatgactcatcttaatctagaa 36050600  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 36053777 - 36053859
Alignment:
Q  184 atgataggatatttagaataaggagcactaatgtggtgactcatctagttctaaaagttattatgactcaccttaatctagaa 266  Q
    ||||||||||||||||||||| ||| ||||||||||||||||  ||||||||| ||| || ||||||||| ||||||||||||    
T  36053777 atgataggatatttagaataatgagtactaatgtggtgactcccctagttctagaaggtagtatgactcatcttaatctagaa 36053859  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 327 - 457
Target Start/End: Complemental strand, 55322467 - 55322335
Alignment:
Q  327 gcacaagtctatataagcattgtatgttttgttatgagaatcaatgaaaaat-ataatgaattttctttctcttttcattagtttctccctctaattcct 425  Q
    ||||||||||||||||||||||||||  |  |||| || || |||||||||| ||||||||||| |||||| || ||  ||| |||| | ||||| | ||    
T  55322467 gcacaagtctatataagcattgtatgcctcattattaggatgaatgaaaaataataatgaatttcctttcttttatctctagcttctacttctaaattct 55322368  T
Q  426 ggagtgt-aaccctactcgaattggatcgtatc 457  Q
    ||||||| | ||||||||||||||| |||||||    
T  55322367 ggagtgtgatccctactcgaattgggtcgtatc 55322335  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 396
Target Start/End: Original strand, 24733642 - 24733703
Alignment:
Q  335 ctatataagcattgtatgttttgttatgagaatcaatgaaaaatataatgaattttctttct 396  Q
    |||||||||||||||||||||  | || ||||  ||||||||||||||||||||| ||||||    
T  24733642 ctatataagcattgtatgtttcatgattagaaggaatgaaaaatataatgaatttcctttct 24733703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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