View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_low_16 (Length: 482)
Name: NF5290_low_16
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 74 - 228
Target Start/End: Original strand, 34647382 - 34647536
Alignment:
| Q |
74 |
cgatggctacaattaagaggccctgtgtgactcgattgacacgagcataaccaacacaagtagtaacaaccggcaacaggacaatataatggacaccagg |
173 |
Q |
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| T |
34647382 |
cgatggctacaattaagaggccctgtgtgactcgattgacacgagcataaccaacacaagtagtaacaaccggcaacaggacaatataatggacaccagg |
34647481 |
T |
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| Q |
174 |
ggaattttttggcacatcattcatacattgaagaattaatgatcttgcatttcta |
228 |
Q |
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| T |
34647482 |
ggaatttttgggcacatcattcatacattgaagaattaatgatcttgcaattcta |
34647536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 297 - 406
Target Start/End: Original strand, 34647603 - 34647712
Alignment:
| Q |
297 |
aagaagttaaattaaaccattcaaattgatacagaagataatcaaatctaagaatcgaggaggaacatactcacaaatctcaaatcaataccactaaatc |
396 |
Q |
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| T |
34647603 |
aagaagttaaattagaccatttaaattgacacaaaagagaatcaaatctaagaatcaaagaggaacatactcacagatctcaagtcaataccactaaatc |
34647702 |
T |
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| Q |
397 |
aagtaaagtg |
406 |
Q |
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| T |
34647703 |
aagcaaagtg |
34647712 |
T |
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