View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_low_18 (Length: 452)
Name: NF5290_low_18
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 48 - 445
Target Start/End: Complemental strand, 36537341 - 36536944
Alignment:
| Q |
48 |
ctactacctcattgacacaagaaaacgaatcatccatgaagtcatttcaaagccgtttcaagtcattgatcaaaaaagtagttgaagctccaaaacactt |
147 |
Q |
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| T |
36537341 |
ctactacctcattgacacaagaaaacgaatcatccatgaagtcatttcaaagccgtttcaagtcattgatcaaaaaagtagttgaagctccaaaacactt |
36537242 |
T |
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| Q |
148 |
tcttttctccaccaaaacaaactcacttctaatccttgatcgcttttactacaaagataacaatgtatgtggccaacacctatttcttctagataccaaa |
247 |
Q |
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| T |
36537241 |
tcttttctccaccaaaacaaactcacttctaatccttgatcgcttttactacaaagataacaatgtatgtggccaacacctatttcttctagataccaaa |
36537142 |
T |
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| Q |
248 |
acaaaacatctcaaagagcttcatattccaagagttacaaattctgatatgggttataagatcatagcttcatgcaatggtttattttgtattgctcatt |
347 |
Q |
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| T |
36537141 |
acaaaacatctcaaagagcttcatattccaagagttacaaattctgatatgggttataagatcatagcttcatgcaatggtttattttgtattgctcatt |
36537042 |
T |
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| Q |
348 |
attccttagaccaatactcaacccttttcctttggaatccaaccacaaaacaaaccaaaagaatcattgaaccgccacatcgtcaacaacctttgctt |
445 |
Q |
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| T |
36537041 |
attccttagaccaatactcaacccttttcctttggaatccaaccacaaaacaaaccaaaagaatcattgaaccgccacatcgtcaacaacctttgctt |
36536944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 36537444 - 36537410
Alignment:
| Q |
19 |
aaaactactcaaattcaatacataaaactctacta |
53 |
Q |
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| T |
36537444 |
aaaactactcaaattcaatacataaaactctacta |
36537410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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