View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_low_19 (Length: 445)
Name: NF5290_low_19
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 12 - 426
Target Start/End: Original strand, 30684879 - 30685293
Alignment:
| Q |
12 |
catcatcagaacattgtcagattgtatggggtggagtacgatgaagattttatttaccttgcactcgagcgttgtacttgcaatttaaatgatttggttc |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30684879 |
catcatcagaacattgtcagattgtatggggtggagtacgatgaagattttatttaccttgcactcgagcgttgtacttgcaacttaaatgatttggttc |
30684978 |
T |
|
| Q |
112 |
aagtggagtcagggaaggatactacagaatatctttggnnnnnnnntgaccatccatcacctctactactaaaactgatgaggtttgcattatttcttct |
211 |
Q |
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| T |
30684979 |
aagtggagtcagggaaggatactacagaatatctttggaaaaaaaatgaccatccatcacctctactactaaaactgatgaggtttgcattatttcttct |
30685078 |
T |
|
| Q |
212 |
tgtactcttacttgtccacattctaagtgtagtttattttacacatttttagtataaactaacttccatttttgttttgaaatttaggggtattgttgca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30685079 |
tgtactcttacttgtccacattctaagtgtagtttattttacacatttttagtataaactaacttccatttttgttttgaaatttaggggtattgttgca |
30685178 |
T |
|
| Q |
312 |
ggggttgttcatttgcataaactaggaataatacacggaaatttgaaacctcaaaatgttctaataatcaaggatagatccttaagtgtaaagctttctg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30685179 |
ggggttgttcatttgcataaactaggaataatacacggaaatttgaaacctcaaaatgttctaataatcaaggatagatccttaagtgtaaagctttctg |
30685278 |
T |
|
| Q |
412 |
acatgggcattaccc |
426 |
Q |
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| T |
30685279 |
acatggccattaccc |
30685293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 228 - 423
Target Start/End: Original strand, 30977970 - 30978165
Alignment:
| Q |
228 |
cacattctaagtgtagtttattttacacatttttagtataaactaacttccatttttgttttgaaatttaggggtattgttgcaggggttgttcatttgc |
327 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||| ||||||||| |||||||||||||||| |
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| T |
30977970 |
cacattgtaagtgtagtttattttacacatttttattataaactaacttctatttttgttttgcaacttagggatattgttgccggggttgttcatttgc |
30978069 |
T |
|
| Q |
328 |
ataaactaggaataatacacggaaatttgaaacctcaaaatgttctaataatcaaggatagatccttaagtgtaaagctttctgacatgggcatta |
423 |
Q |
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| T |
30978070 |
atgaactaggaattatacatcgagatttgaaaccccaaaatgttctattaatcaaggaaagatccttatgtgcaaagctttctgacatgggcatta |
30978165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 30977134 - 30977232
Alignment:
| Q |
115 |
tggagtcagggaaggatactacagaatatctttggnnnnnnnntgaccatccatcacctctactactaaaactgatgaggtttgcattatttcttcttg |
213 |
Q |
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| T |
30977134 |
tggagacagggaatgatactacacaatatctttggaaagaaaatggctatccatcacctctactactgaaattgatgaggtttgtattatttcttcttg |
30977232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 30976968 - 30977060
Alignment:
| Q |
21 |
aacattgtcagattgtatggggtggagtacgatgaagattttatttaccttgcactcgagcgttgtacttgcaatttaaatgatttggttcaa |
113 |
Q |
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| T |
30976968 |
aacattgtccgatggcatggggtggagcatgatcaagattttatttaccttgcactggaacgttgtatttgcaacttagacgatttgattcaa |
30977060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 423
Target Start/End: Complemental strand, 9858238 - 9858131
Alignment:
| Q |
316 |
ttgttcatttgcataaactaggaataatacacggaaatttgaaacctcaaaatgttctaataatcaaggatagatccttaagtgtaaagctttctgacat |
415 |
Q |
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|||||||||||||| ||||||||||||||||| | |||||||||| ||||||||| | |||||||||| || || ||| ||| || |||||||| || |
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| T |
9858238 |
ttgttcatttgcatgaactaggaataatacaccgggatttgaaaccccaaaatgttttgttaatcaaggaaaggtcattatgtgccaaactttctgatat |
9858139 |
T |
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| Q |
416 |
gggcatta |
423 |
Q |
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||| |||| |
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| T |
9858138 |
ggggatta |
9858131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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