View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_low_21 (Length: 422)
Name: NF5290_low_21
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 30960061 - 30959666
Alignment:
| Q |
15 |
aagcgagaaagacaattttacttgcaacacaaccaatgttttatcatcactataattatttgtgtttgaacaataaccctaatattttgattgtttattc |
114 |
Q |
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| T |
30960061 |
aagcgagaaagacaattttacttgcaacacaaccaatgttttatcatcactataattatttgtgtttgaacaataaccctaatattttgattgtttattc |
30959962 |
T |
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| Q |
115 |
aaggaatttgtgaannnnnnnnn--caacatgatgtttaggggagatgatgcatattgcccggagttgaataatttggatcacaatgaatcacgcaagac |
212 |
Q |
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| T |
30959961 |
aaggaatttgtgaatttttttctttcaacatgatgtttaggggagatgatgcatattgcccggagttgaataatttggatcacaatgaatcacgcaagac |
30959862 |
T |
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| Q |
213 |
a-------------------attcctatatataaagatgtgcatcttggtttatttcttgtttgaaatactctatatcttttcttttgcaaactattttc |
293 |
Q |
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| T |
30959861 |
atttcatgccttgcaagacaattcctatatataaagatgtgcatcttggtttatttcttgtttgaaatactctatatcttttcttttgcaaactattttc |
30959762 |
T |
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| Q |
294 |
ttcactttgttggggtttaccttcttctattttgttttgctttacatgttttactcttctcggttactttacataaggaagtcataaatgattcga |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30959761 |
ttcactttgttggggtttaccttcttctattttgttttgctttacatgttttactcttctcggttacttaacataaggaagtcataaatgattcga |
30959666 |
T |
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