View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_low_25 (Length: 367)
Name: NF5290_low_25
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 3940474 - 3940124
Alignment:
| Q |
1 |
tcatcatccaaatttactaaataataataacaccaaaaacataatttaaatgagaaacatagtttacttcaaatataaaagtagtttatcggtttaatga |
100 |
Q |
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| T |
3940474 |
tcataatccaaatttactaaataataataacaccaaaaacataatttaaatgaaaaacataatttacttcaaatataaaagtagtttatcggtttaatga |
3940375 |
T |
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| Q |
101 |
ctatacactgacaatttaaaaccttttctttacacaatcgtcaaattcaatgatcgtgtgaaagaatgttttaaattgttagtgtatagtcattcaacag |
200 |
Q |
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| T |
3940374 |
ctatacactgacaatttaaaaccttttttttacacaatcgtcaaattcgatgatcgtgtgaaagaatgttttaaattgtcagtgtatagtcattcaacgg |
3940275 |
T |
|
| Q |
201 |
atgaactattactcactttagaaag-nnnnnnnnntgcaaatcaaggtaaaagaacaaaccatacatcaaaacagacaacacctccaaaaccagtcattt |
299 |
Q |
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| T |
3940274 |
atgaactattactcactttagaaagaaaaaaaaaatgcaaatcaaggtaaaagaacaaaccatacatcaaaacagacaacacctccaaaaccagtcattt |
3940175 |
T |
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| Q |
300 |
gcctcttggcgagggcatattcgggatgacttggcaagccgggatagtaga |
350 |
Q |
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| T |
3940174 |
gcctcttggcgagggcatattcgggatgacttggcaagccgggatagtaga |
3940124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 3940267 - 3940393
Alignment:
| Q |
82 |
tagtttatcggtttaatgactatacactgacaatttaaaaccttttctttacacaatcgtcaaattcaatgatcgtgt-gaaagaatgttttaaattgtt |
180 |
Q |
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| T |
3940267 |
tagttcatccgttgaatgactatacactgacaatttaaaacattct-ttcacacgatcatcgaatttgacgattgtgtaaaaaaaaggttttaaattgtc |
3940365 |
T |
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| Q |
181 |
agtgtatagtcattcaacagatgaacta |
208 |
Q |
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| T |
3940366 |
agtgtatagtcattaaaccgataaacta |
3940393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 266 - 350
Target Start/End: Complemental strand, 2984734 - 2984650
Alignment:
| Q |
266 |
tcaaaacagacaacacctccaaaaccagtcatttgcctcttggcgagggcatattcgggatgacttggcaagccgggatagtaga |
350 |
Q |
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||||||| ||| |||||||||||||||||||| |||||| |||| || | | ||| ||||||||||||||||| |||||||||| |
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| T |
2984734 |
tcaaaactgaccacacctccaaaaccagtcatctgcctcatggcaagctcgtgttcaggatgacttggcaagcctggatagtaga |
2984650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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