View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_low_28 (Length: 352)
Name: NF5290_low_28
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 39996891 - 39996571
Alignment:
| Q |
10 |
aatatacttttaccagcccccaaaaaactggcttccctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgttttat |
109 |
Q |
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| T |
39996891 |
aatatacttttaccagcccccaaaaaactggcttacctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgttttat |
39996792 |
T |
|
| Q |
110 |
ccacttgccggtcgtttacactcgaaaggaaatggtcgttttgatcttgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgttaacat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39996791 |
ccacttgccggtcgtttacactcgaaaggaaatggtcgttttgatctcgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgttaacat |
39996692 |
T |
|
| Q |
210 |
tatccgaactaggtgacttttcaccttcttcagaatattaccgttaccttatcccacacattgattacacactcccaatggaagatattccactggttat |
309 |
Q |
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| T |
39996691 |
tatccgaactaggtgacttttcaccttcttcggaatattaccgttaccttatcccacacattgattacacactcccaatggaagatattccactggttat |
39996592 |
T |
|
| Q |
310 |
cgttcaactcacaaattttaa |
330 |
Q |
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| ||||||||||||||||||| |
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| T |
39996591 |
ctttcaactcacaaattttaa |
39996571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 53036708 - 53037021
Alignment:
| Q |
14 |
tacttttaccagcccccaaaaaactggcttccctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgttttatccac |
113 |
Q |
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|||||||||| |||||| |||| |||||| ||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
53036708 |
tacttttaccgccccccacaaaaatggcttacctcccccaataaaatcgccaccactttgaaagactcattgagcaaagtccttgtgccgttttatccac |
53036807 |
T |
|
| Q |
114 |
ttgccggtcgtttacactcgaaaggaaatggtcgttttgatcttgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgttaacattatc |
213 |
Q |
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| |||||||||||||| | ||||| || |||||||||||| | ||||||||||||||||||| |||||||||||||||| |||| |||||||| ||||| |
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| T |
53036808 |
tagccggtcgtttacaatggaaagaaagcggtcgttttgatgtcgaatgcaactcattgggtgctcaattcatcgaagcagaatcgtcgttaaccttatc |
53036907 |
T |
|
| Q |
214 |
cgaactaggtgacttttcaccttcttcagaatattaccgttaccttatcccacacattgattacacactcccaatggaagatattccactggttatcgtt |
313 |
Q |
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|||||||||||||||||||||||||| |||||||| | |||||||||||| ||||| |||||||||| |||||| ||||| |||||| ||||||| ||| |
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| T |
53036908 |
cgaactaggtgacttttcaccttcttgtgaatattatccttaccttatcccgcacatcgattacacacgcccaattgaagacattccattggttattgtt |
53037007 |
T |
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| Q |
314 |
caactcacaaattt |
327 |
Q |
| |
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|| ||||||||||| |
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| T |
53037008 |
cagctcacaaattt |
53037021 |
T |
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