View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5290_low_3 (Length: 660)
Name: NF5290_low_3
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 57 - 529
Target Start/End: Complemental strand, 2018104 - 2017625
Alignment:
| Q |
57 |
attatataatacgaatatgtataaatcatctaaaatcaatgttatcaatcataaatccctttacgctgcactgccatagcgccactataacccgcttttt |
156 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
2018104 |
attatataacacaaatatgtataaatcatctaaaatcaatgttatcaatcacaaatccctttacgctgcactgtcatagcgccactataacc-gcttttt |
2018006 |
T |
|
| Q |
157 |
gacaacagtgttactaaatggtggtcttggcaccaccatggcgggcatttgtgaaggaatgcccatcatcgcagtgccatagactgcaatggcgtgtttg |
256 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
2018005 |
gacaacagtgttactaaatggtggtcgtggcaccaccatggcgggcatttgggaaggaatgcccatcatcgcagtgtcataggctgcaatggcgtgtttg |
2017906 |
T |
|
| Q |
257 |
tatagatgatttttaaccatcggctatat-------tccgccttagacaacattgaatgacaacactttgtcacaaaactcacatttcatccctaaatta |
349 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017905 |
tatagaggatttttaaccatcggctatattctgccatccgccatagacaacattgattgacaacactttgtcacaaaactcacatttcatccctaaatta |
2017806 |
T |
|
| Q |
350 |
cgaaattatttgttcatcaaatattaacattttgtatctcaaaatataacaaaaacattctcagttccaacac-annnnnnnnccattcacattccgcga |
448 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2017805 |
cgaaattatttcttcctcaaatattaacattttgtatctcaaaatataacaaaaacattctcagttccaacactttttttttttcattcacattccgcga |
2017706 |
T |
|
| Q |
449 |
aatcaatggttgatgatgatgatctgcctcgacgagattaatatggtgcatgcatgcattttgttaagaacgcttattgtg |
529 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017705 |
aatcaatggttgatgatgatgatctgccgcgacgcgattaatatggtgcatgcatgcattttgttaagaacgcttattgtg |
2017625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 524 - 649
Target Start/End: Complemental strand, 2017324 - 2017189
Alignment:
| Q |
524 |
attgtggccgcaatttgcggtggaattgaatccgaaaaaatgatagagaataacctggatggagagttcttggcggccgatgatcaa----------ctc |
613 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
2017324 |
attgtgcccgcaatttgcggtggaattgaatccgaaaaaatgatagacaataacctggatggagagttcttggcgtccgatgatcaactacgtcgtgctc |
2017225 |
T |
|
| Q |
614 |
cggcgacgtttttaggaaagttgagttctgtgctgc |
649 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
2017224 |
cggcgacgttttcagggaagttgagttctgtgctgc |
2017189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 2020527 - 2020460
Alignment:
| Q |
132 |
atagcgccactataacccgctttttgacaacagtgttactaaatggtggtcttggcaccaccatggcgg |
200 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2020527 |
atagtgccactataacc-gctttttgacagcagtgttactaaatggtggtcatggcaccaccatggcgg |
2020460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 203 - 291
Target Start/End: Complemental strand, 2020434 - 2020346
Alignment:
| Q |
203 |
atttgtgaaggaatgcccatcatcgcagtgccatagactgcaatggcgtgtttgtatagatgatttttaaccatcggctatattccgcc |
291 |
Q |
| |
|
||||||||||||||||| || || | ||||||||| |||||||||| ||||| ||||| |||||||||||||| |||||| |||||| |
|
|
| T |
2020434 |
atttgtgaaggaatgcctgtcgtcacggtgccataggctgcaatggcttgtttatatagcggatttttaaccatcagctatactccgcc |
2020346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 412
Target Start/End: Complemental strand, 2020161 - 2020115
Alignment:
| Q |
366 |
tcaaatattaacattttgtatctcaaaatataacaaaaacattctca |
412 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||||||||||||| |
|
|
| T |
2020161 |
tcaaatattaacattttttaccccaaaatataacaaaaacattctca |
2020115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 2020733 - 2020705
Alignment:
| Q |
15 |
aaaagaaacatgaaagggacatatatatg |
43 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2020733 |
aaaagaaacatgaaagggacatatatatg |
2020705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University