View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5290_low_31 (Length: 324)

Name: NF5290_low_31
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5290_low_31
NF5290_low_31
[»] chr6 (33 HSPs)
chr6 (75-235)||(27608139-27608299)
chr6 (22-235)||(27681931-27682141)
chr6 (75-235)||(27715529-27715686)
chr6 (75-232)||(27695599-27695756)
chr6 (75-174)||(26805554-26805653)
chr6 (100-232)||(27590183-27590312)
chr6 (75-174)||(27674587-27674686)
chr6 (88-167)||(25491191-25491270)
chr6 (88-231)||(26952583-26952723)
chr6 (109-174)||(26887824-26887889)
chr6 (100-232)||(26058890-26059019)
chr6 (100-232)||(26078860-26078989)
chr6 (100-174)||(26826913-26826987)
chr6 (100-173)||(28789399-28789472)
chr6 (100-232)||(25547951-25548080)
chr6 (75-173)||(26851561-26851659)
chr6 (100-164)||(25486406-25486470)
chr6 (100-164)||(25513911-25513975)
chr6 (100-232)||(26638381-26638513)
chr6 (100-232)||(26744347-26744479)
chr6 (75-172)||(26659009-26659106)
chr6 (75-172)||(26764980-26765077)
chr6 (100-173)||(28795423-28795496)
chr6 (100-164)||(25582743-25582807)
chr6 (88-174)||(26061598-26061682)
chr6 (88-174)||(26081568-26081652)
chr6 (101-230)||(26876539-26876665)
chr6 (88-174)||(25077045-25077131)
chr6 (88-174)||(26962130-26962216)
chr6 (198-235)||(26626103-26626140)
chr6 (198-235)||(26732080-26732117)
chr6 (100-164)||(26146036-26146100)
chr6 (112-172)||(28246414-28246474)
[»] chr8 (1 HSPs)
chr8 (75-235)||(29270865-29271025)
[»] scaffold0349 (1 HSPs)
scaffold0349 (75-235)||(16259-16416)
[»] chr2 (1 HSPs)
chr2 (92-173)||(17990182-17990263)
[»] chr1 (3 HSPs)
chr1 (75-232)||(265354-265508)
chr1 (95-130)||(28124680-28124715)
chr1 (95-130)||(28129711-28129746)
[»] scaffold0419 (1 HSPs)
scaffold0419 (100-173)||(10549-10622)
[»] scaffold0277 (2 HSPs)
scaffold0277 (100-173)||(1761-1834)
scaffold0277 (100-173)||(10727-10800)
[»] chr4 (6 HSPs)
chr4 (75-172)||(18652548-18652645)
chr4 (75-172)||(18676630-18676727)
chr4 (75-172)||(18686673-18686770)
chr4 (75-172)||(18721144-18721241)
chr4 (75-174)||(18696479-18696578)
chr4 (75-172)||(18728569-18728666)
[»] scaffold0038 (1 HSPs)
scaffold0038 (112-172)||(46576-46636)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 75 - 235
Target Start/End: Original strand, 27608139 - 27608299
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| ||||||||||||||||||||||||||||||    
T  27608139 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaagtgtgagtcccctgctttggtgctcaaaccaatctggtatcccc 27608238  T
Q  175 agctctgttcggtttgcaaattcaatatgggtgcatccagcctcatgtagtttctgtttgt 235  Q
     ||||||||| |||||  ||||||| || ||||||||||||||||||||||||||||||||    
T  27608239 tgctctgttccgtttgggaattcaaaataggtgcatccagcctcatgtagtttctgtttgt 27608299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 27682141 - 27681931
Alignment:
Q  22 atttcgtatccattcacacaaaaattgacccttgtgcaataactatagccatacggaagaataaatatacaagttattgaagggatttctttacgaaacc 121  Q
    ||||| |||||||||||| ||| |||||| ||||||  |||   || ||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  27682141 atttcatatccattcacaaaaacattgacacttgtggcatactcattgcctttcggaagaataaatatacaagttattgaagggatttctttacgaaacc 27682042  T
Q  122 agaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggtttgcaaattcaatatgggtgcatccagcctcatg 221  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||   |||| |||  ||||  || | ||| | ||||||||| ||||||||    
T  27682041 agaaagaaattatgggtcccctgctttggtgctcaaaccaatctggtatccc---ctctcttccatttgggaaataaatcttggtgcatcccgcctcatg 27681945  T
Q  222 tagtttctgtttgt 235  Q
    ||||||||||||||    
T  27681944 tagtttctgtttgt 27681931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 75 - 235
Target Start/End: Original strand, 27715529 - 27715686
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 174  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||     
T  27715529 cggaaaaataattatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatccc- 27715627  T
Q  175 agctctgttcggtttgcaaattcaatatgggtgcatccagcctcatgtagtttctgtttgt 235  Q
       ||||||| |||||  |||| ||||| |||||||||||||| |||||||||||||||||    
T  27715628 --atctgttccgtttgggaatttaatataggtgcatccagcctgatgtagtttctgtttgt 27715686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 27695599 - 27695756
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 174  Q
    |||||||||||| ||||||| ||| ||||||||||||||| ||||||| ||||||||| ||  |||||| ||||||||||||||||||||||||||||||    
T  27695599 cggaagaataaaaatacaagatatagaagggatttctttatgaaaccaaaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccc 27695698  T
Q  175 agctctgttcggtttgcaaattcaatatgggtgcatccagcctcatgtagtttctgtt 232  Q
    |||||||||| |||||  || |||| | | ||||||| |||||||||||||| |||||    
T  27695699 agctctgttccgtttgggaaatcaaaacgagtgcatcgagcctcatgtagttgctgtt 27695756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 26805653 - 26805554
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 174  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||    
T  26805653 cggaagaataaaaatacatgttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccttgctttggtgctcaaaccaatctggtatcccc 26805554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 232
Target Start/End: Original strand, 27590183 - 27590312
Alignment:
Q  100 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggtttgcaaattcaa 199  Q
    ||||||||||||||||||||||||||||||||| ||  |||||| ||||||||||||||||||||||||||||||   ||||||| |||||  || | ||    
T  27590183 gaagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccc---tctgttccgtttgggaaataaa 27590279  T
Q  200 tatgggtgcatccagcctcatgtagtttctgtt 232  Q
     ||  ||||||| |||||||||||||| |||||    
T  27590280 aataagtgcatcgagcctcatgtagttcctgtt 27590312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 27674587 - 27674686
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 174  Q
    |||| ||||| | ||| |||| || ||||||||||||||||||||||||||||||||| ||  |||||| ||||||||||||||||||||||||||||||    
T  27674587 cggaggaatacaaatataagtcatagaagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccc 27674686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 25491191 - 25491270
Alignment:
Q  88 atacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctgg 167  Q
    |||||| ||||||||||||||||||||| |||||||||||||||| |  |||||||| |||||||||| |||||||||||    
T  25491191 atacaacttattgaagggatttctttacaaaaccagaaagaaattgtccgtcccctaatttggtgctcgaaccaatctgg 25491270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 231
Target Start/End: Complemental strand, 26952723 - 26952583
Alignment:
Q  88 atacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggt 187  Q
    ||||||||||| |||||||| | | |||||||||||||||||||| ||  ||||||  |||||||||||||||||||||| |||||   |||||||  ||    
T  26952723 atacaagttatagaagggatctttctacgaaaccagaaagaaattgtgtctcccctggtttggtgctcaaaccaatctggaatccc---ctctgttttgt 26952627  T
Q  188 ttgcaaattcaatatgggtgcatccagcctcatgtagtttctgt 231  Q
    |||  || | ||||| ||||||||||||||  | ||||||||||    
T  26952626 ttgggaaatgaatataggtgcatccagccttgtttagtttctgt 26952583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 26887889 - 26887824
Alignment:
Q  109 tctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 174  Q
    |||||||||||||||||||||| | || ||||||| ||||||||||||||||||||||| ||||||    
T  26887889 tctttacgaaaccagaaagaaagtgtgtgtcccctgctttggtgctcaaaccaatctggaatcccc 26887824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 26059019 - 26058890
Alignment:
Q  100 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggtttgcaaattcaa 199  Q
    ||||||| |||||||  |||||||||||||||| ||  |||||| |||||||||||||||||||| || ||||     || |||  |||||  |||  ||    
T  26059019 gaagggagttctttatcaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatcaggaatcc---tatccgttgtgtttgggaatagaa 26058923  T
Q  200 tatgggtgcatccagcctcatgtagtttctgtt 232  Q
    ||||||||||||||| |||||||||||||||||    
T  26058922 tatgggtgcatccagactcatgtagtttctgtt 26058890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 26078989 - 26078860
Alignment:
Q  100 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggtttgcaaattcaa 199  Q
    ||||||| |||||||  |||||||||||||||| ||  |||||| |||||||||||||||||||| || ||||     || |||  |||||  |||  ||    
T  26078989 gaagggagttctttatcaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatcaggaatcc---tatccgttgtgtttgggaatagaa 26078893  T
Q  200 tatgggtgcatccagcctcatgtagtttctgtt 232  Q
    ||||||||||||||| |||||||||||||||||    
T  26078892 tatgggtgcatccagactcatgtagtttctgtt 26078860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 26826987 - 26826913
Alignment:
Q  100 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 174  Q
    |||||||||| |||||||||||||||||||||| ||  ||| || |||||||||||||||| |||||| ||||||    
T  26826987 gaagggatttttttacgaaaccagaaagaaattgtgtctcctctgctttggtgctcaaaccgatctggaatcccc 26826913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 28789472 - 28789399
Alignment:
Q  100 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccc 173  Q
    |||||||| | |||||||||||||||||||||| ||  |||||| ||||||||||| ||||||||||| |||||    
T  28789472 gaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 28789399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 25548080 - 25547951
Alignment:
Q  100 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggtttgcaaattcaa 199  Q
    ||||||| |||||||  |||||||||||||||| |   |||||| |||||||||||||||||||| || ||||     ||||||  |||||  |||| ||    
T  25548080 gaagggagttctttatcaaaccagaaagaaattgtctctcccctgctttggtgctcaaaccaatcaggaatcc---tttctgttgtgtttgggaattgaa 25547984  T
Q  200 tatgggtgcatccagcctcatgtagtttctgtt 232  Q
     ||||||||||||||  ||||||||||||||||    
T  25547983 aatgggtgcatccagattcatgtagtttctgtt 25547951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 26851659 - 26851561
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccc 173  Q
    ||||| |||||  ||||| ||||| |||||||| | ||||||||||||||| |||||| ||  | |||| ||||||||||| ||||||||||| |||||    
T  26851659 cggaacaataataatacatgttatagaagggatctttttacgaaaccagaaggaaattgtgttttccctgctttggtgctcgaaccaatctggaatccc 26851561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 25486470 - 25486406
Alignment:
Q  100 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatc 164  Q
    ||||||| |||||||  |||||||||||||||| ||  |||||| ||||||||||||||||||||    
T  25486470 gaagggagttctttatcaaaccagaaagaaattgtgcctcccctgctttggtgctcaaaccaatc 25486406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 25513975 - 25513911
Alignment:
Q  100 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatc 164  Q
    ||||||||||||||| || ||||||||| |||| ||  |||||| ||||||||||||||||||||    
T  25513975 gaagggatttctttatgataccagaaagcaattgtgactcccctgctttggtgctcaaaccaatc 25513911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 26638513 - 26638381
Alignment:
Q  100 gaagggatttctttacgaaaccagaaagaaattatg---ggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggtttgcaaatt 196  Q
    |||||||| | |||||||||||||||||||||| ||    ||||||| ||||| ||||| ||||||||||| ||| |   |||||||| | ||| |||      
T  26638513 gaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctc---ctctgttctggttggaaaac 26638417  T
Q  197 caatatgggtgcatccagcctcatgtagtttctgtt 232  Q
     |||||  ||||||||||| ||||||||||||||||    
T  26638416 gaatatcagtgcatccagcttcatgtagtttctgtt 26638381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 26744479 - 26744347
Alignment:
Q  100 gaagggatttctttacgaaaccagaaagaaattatg---ggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggtttgcaaatt 196  Q
    |||||||| | |||||||||||||||||||||| ||    ||||||| ||||| ||||| ||||||||||| ||| |   |||||||| | ||| |||      
T  26744479 gaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctc---ctctgttctggttggaaaac 26744383  T
Q  197 caatatgggtgcatccagcctcatgtagtttctgtt 232  Q
     |||||  ||||||||||| ||||||||||||||||    
T  26744382 gaatatcagtgcatccagcttcatgtagtttctgtt 26744347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 26659106 - 26659009
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 172  Q
    |||||||| ||  |||||| | || |||||||| | |||||||||||||||||||| | |  |||||||  |||||||||| ||||||||||| ||||    
T  26659106 cggaagaagaagaatacaaataatagaagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgggatcc 26659009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 26765077 - 26764980
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 172  Q
    |||||||| ||  |||||| | || |||||||| | |||||||||||||||||||| | |  |||||||  |||||||||| ||||||||||| ||||    
T  26765077 cggaagaagaagaatacaaataatagaagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgggatcc 26764980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 28795496 - 28795423
Alignment:
Q  100 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccc 173  Q
    |||||||| | ||||| ||||||||| |||||| ||  |||||| ||||||||||| ||||||||||| |||||    
T  28795496 gaagggatctttttacaaaaccagaaggaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 28795423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 25582807 - 25582743
Alignment:
Q  100 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatc 164  Q
    ||||||| |||||||  |||||||||||||||| |   |||||| ||||||||||||||||||||    
T  25582807 gaagggagttctttatcaaaccagaaagaaattgtctctcccctgctttggtgctcaaaccaatc 25582743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 26061682 - 26061598
Alignment:
Q  88 atacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 174  Q
    |||| |||||| |||||||||| |||||||||||||||| ||||  || ||||| |  |||||||||  ||||||||||| ||||||    
T  26061682 atactagttatagaagggatttatttacgaaaccagaaaaaaat--tgtgtcccgtgatttggtgctttaaccaatctggaatcccc 26061598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 26081652 - 26081568
Alignment:
Q  88 atacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 174  Q
    |||| |||||| |||||||||| |||||||||||||||| ||||  || ||||| |  |||||||||  ||||||||||| ||||||    
T  26081652 atactagttatagaagggatttatttacgaaaccagaaaaaaat--tgtgtcccgtgatttggtgctttaaccaatctggaatcccc 26081568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 26876665 - 26876539
Alignment:
Q  101 aagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggtttgcaaattcaat 200  Q
    ||||||| | |||||||||||||||||||||| |  ||||| |  ||||||| |  ||||| ||||| ||||||   ||||||| |||||  |    |||    
T  26876665 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccc---tctgttccgtttgggagaagaat 26876569  T
Q  201 atgggtgcatccagcctcatgtagtttctg 230  Q
    || |||||||||||||||||||||||||||    
T  26876568 ataggtgcatccagcctcatgtagtttctg 26876539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 25077131 - 25077045
Alignment:
Q  88 atacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 174  Q
    |||||||| || |||||||| | ||| |||||||||||||||||| ||  ||||    |||||||||| ||||||||||| ||||||    
T  25077131 atacaagtaatagaagggatctttttgcgaaaccagaaagaaattgtgtctccctccatttggtgctcgaaccaatctggaatcccc 25077045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 26962216 - 26962130
Alignment:
Q  88 atacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 174  Q
    ||||| ||||| | |||||| | ||| ||| |||||||||||| | ||  |||| | ||||||||||||||||||||||| ||||||    
T  26962216 atacatgttatagtagggatctttttgcgataccagaaagaaaatgtgtctccctttctttggtgctcaaaccaatctggaatcccc 26962130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 26626140 - 26626103
Alignment:
Q  198 aatatgggtgcatccagcctcatgtagtttctgtttgt 235  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  26626140 aatattggtgcatccagcctcatgtactttctgtttgt 26626103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 26732117 - 26732080
Alignment:
Q  198 aatatgggtgcatccagcctcatgtagtttctgtttgt 235  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  26732117 aatattggtgcatccagcctcatgtactttctgtttgt 26732080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 26146100 - 26146036
Alignment:
Q  100 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatc 164  Q
    ||||||| || |||| || ||||||||| |||| ||  |||||| ||||||||||||||||||||    
T  26146100 gaagggagttttttatgataccagaaagcaattttgcctcccctgctttggtgctcaaaccaatc 26146036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 28246474 - 28246414
Alignment:
Q  112 ttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 172  Q
    ||||||||||| ||||||||| |  ||||| | |||||||| |||||||||||||| ||||    
T  28246474 ttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcc 28246414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 75 - 235
Target Start/End: Original strand, 29270865 - 29271025
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 174  Q
    |||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||    
T  29270865 cggaagcataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgttcgaaccaatctggtatcccc 29270964  T
Q  175 agctctgttcggtttgcaaattcaatatgggtgcatccagcctcatgtagtttctgtttgt 235  Q
     |||||||||  ||| |||||| ||||| ||||||||||| ||||||||||||||||||||    
T  29270965 tgctctgttccattttcaaattgaatataggtgcatccagtctcatgtagtttctgtttgt 29271025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 75 - 235
Target Start/End: Complemental strand, 16416 - 16259
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 174  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||     
T  16416 cggaaaaataattatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatccc- 16318  T
Q  175 agctctgttcggtttgcaaattcaatatgggtgcatccagcctcatgtagtttctgtttgt 235  Q
       ||||||| |||||  |||| ||||| |||||||||||||| |||||||||||||||||    
T  16317 --atctgttccgtttgggaatttaatataggtgcatccagcctgatgtagtttctgtttgt 16259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 173
Target Start/End: Original strand, 17990182 - 17990263
Alignment:
Q  92 aagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccc 173  Q
    ||||||| ||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||| |||||    
T  17990182 aagttatagaagggatttctttacgaaaccagaaagaaattgtgtgccccctgctttggtgctcaaaccaatctggaatccc 17990263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 265354 - 265508
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 174  Q
    |||||||||||  ||| |||| |  |||||||| | |||||||||||||||||||||| ||  |||| | |||||||||||||||||||||||||||||     
T  265354 cggaagaataataataaaagtaacagaagggatctttttacgaaaccagaaagaaattgtgtttcccttgctttggtgctcaaaccaatctggtatccc- 265452  T
Q  175 agctctgttcggttt-gcaaattcaatatgggtgcatccagcctcatgtagtttctgtt 232  Q
      |||||||| |||| | |||| ||| ||  ||||||| ||| ||||||||||||||||    
T  265453 --ctctgttccgtttgggaaatacaa-ataagtgcatcgagcttcatgtagtttctgtt 265508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 28124680 - 28124715
Alignment:
Q  95 ttattgaagggatttctttacgaaaccagaaagaaa 130  Q
    |||| |||||||||||||||||||||||||||||||    
T  28124680 ttatagaagggatttctttacgaaaccagaaagaaa 28124715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 28129711 - 28129746
Alignment:
Q  95 ttattgaagggatttctttacgaaaccagaaagaaa 130  Q
    |||| |||||||||||||||||||||||||||||||    
T  28129711 ttatagaagggatttctttacgaaaccagaaagaaa 28129746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 10622 - 10549
Alignment:
Q  100 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccc 173  Q
    |||||||| | |||||||||||||||||||||| ||  |||||| ||||||||||| ||||||||||| |||||    
T  10622 gaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 10549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 1761 - 1834
Alignment:
Q  100 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccc 173  Q
    |||||||| | |||||||||||||||||||||| ||  |||||| ||||||||||| ||||||||||| |||||    
T  1761 gaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 1834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 10727 - 10800
Alignment:
Q  100 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccc 173  Q
    |||||||| | |||||||||||||||||||||| ||  |||||| ||||||||||| ||||||||||| |||||    
T  10727 gaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 10800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 18652548 - 18652645
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 172  Q
    |||||||||||  ||| ||||||| |||||||| | |||||| |||||||||||||||    | ||||| ||||| ||||| ||||||||||| ||||    
T  18652548 cggaagaataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcc 18652645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 18676630 - 18676727
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 172  Q
    |||||||||||  ||| ||||||| |||||||| | |||||| |||||||||||||||    | ||||| ||||| ||||| ||||||||||| ||||    
T  18676630 cggaagaataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcc 18676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 18686673 - 18686770
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 172  Q
    ||||||||||| |||| ||||||| |||||||| | |||||  |||||||||||||||    | ||||| ||||| ||||| ||||||||||| ||||    
T  18686673 cggaagaataattatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcc 18686770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 18721144 - 18721241
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 172  Q
    |||||||||||  ||| ||||||| |||||||| | |||||  |||||||||||||||    | ||||| ||||||||||| ||||||||||| ||||    
T  18721144 cggaagaataataataaaagttatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttggtgctcgaaccaatctggaatcc 18721241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 18696479 - 18696578
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 174  Q
    |||||||||||  ||| || |||| |||||||| | |||||| |||||||||||||||    | ||||| ||||| ||||| ||||||||||| ||||||    
T  18696479 cggaagaataataataaaatttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcccc 18696578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 18728569 - 18728666
Alignment:
Q  75 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 172  Q
    |||||||||||  ||| ||||||| |||||||| | |||||  |||||||||||||||    | ||||| ||||| ||||| ||||||||||| ||||    
T  18728569 cggaagaataataataaaagttatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttgatgctcgaaccaatctggaatcc 18728666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 46636 - 46576
Alignment:
Q  112 ttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 172  Q
    ||||||||||| ||||||||| |  ||||| | |||||||| |||||||||||||| ||||    
T  46636 ttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcc 46576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University