View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_low_33 (Length: 302)
Name: NF5290_low_33
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_33 |
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| [»] scaffold0099 (2 HSPs) |
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| [»] scaffold0018 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 24912180 - 24912457
Alignment:
| Q |
1 |
aagaaatgcatcagaggagaatgtcactaatagccagcaaattctagtagtggttgagattgtcgataatgtactggctgctcatgcttcatgaacaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24912180 |
aagaaatgcatcagaggagaatgtcactaatagccagcaaattctagtagtggttgagtttgtcgataatgtactggctgctcatgcttcatgaacaatt |
24912279 |
T |
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| Q |
101 |
aatgttacatactactattgtaaaaatgtttgtgcaatatattatgccgatacattttaagatattatgacaggtgtgtgattcatgttaagtaatgagc |
200 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24912280 |
aatgttacatactacgattgtaaaaatgtttgtacaatatattatgccgatacattttaagatattatgacaggtgtgtgattcatgttaagtaatgaac |
24912379 |
T |
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| Q |
201 |
ttgttgatatagttatggctgctcatgcttcattaacaagtcatgtttcataatgttgtgtaaaaatttacctattactac |
281 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
24912380 |
ttgttgatatggttatgg-tgctcatgcttcattaacaagtcatgtttcataatgt--tgtaaaaattaacctattactac |
24912457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 122 - 254
Target Start/End: Original strand, 24900027 - 24900159
Alignment:
| Q |
122 |
aaaaatgtttgtgcaatatattatgccgatacattttaagatattatgacaggtgtgtgattcatgttaagtaatgagcttgttgatatagttatggctg |
221 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24900027 |
aaaaatgtttgtacaatatattatgccaatacattttaagatattatgacaggtgtgtgattcatgttaagtaatgagcttgttgatatagttatggctg |
24900126 |
T |
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| Q |
222 |
ctcatgcttcattaacaagtcatgtttcataat |
254 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
24900127 |
atcatgcttcattaacaagtcatgtttcataat |
24900159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 125 - 241
Target Start/End: Original strand, 24988957 - 24989073
Alignment:
| Q |
125 |
aatgtttgtgcaatatattatgccgatacattttaagatattatgacaggtgtgtgattcatgttaagtaatgagcttgttgatatagttatggctgctc |
224 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
24988957 |
aatgtttgtacaatatattatgccgatacattttaagatattatgacaggtgtgtgattcatgttaagtaaagaacttgttgatatagttatggctgctc |
24989056 |
T |
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| Q |
225 |
atgcttcattaacaagt |
241 |
Q |
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||||||||||||||||| |
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| T |
24989057 |
atgcttcattaacaagt |
24989073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 24988861 - 24988959
Alignment:
| Q |
1 |
aagaaatgcatcagaggagaatgtcactaatagccagcaaattctagtagtggttgagattgtcgataatgtactggctgctcatgcttcatgaacaat |
99 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
24988861 |
aagaaatgcatcagaggagaatgtcactaatagccagcaaattctagtagtggttgagtttgttgataatgtactggctgctcatgcttcatgaacaat |
24988959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 24899934 - 24900028
Alignment:
| Q |
1 |
aagaaatgcatcagaggagaatgtcactaatagccagcaaattctagtagtggttgagattgtcgataatgtactggctgctcatgcttcatgaa |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| |
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| T |
24899934 |
aagaaatgcatcagaggagaatgtcactaatagccagcaaattctagtagtggttgagtttgttgataatgtactggctgcgcatgcttcatgaa |
24900028 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 125 - 237
Target Start/End: Original strand, 25229 - 25342
Alignment:
| Q |
125 |
aatgtttgtgcaatatattatgccgatacatttt-aagatattatgacaggtgtgtgattcatgttaagtaatgagcttgttgatatagttatggctgct |
223 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
25229 |
aatgtttgtacaatatattatgccgatacatttttaagatattatgacaggtgtgtgattcatgttaagtaaagaacttgttgatatagttatggctgct |
25328 |
T |
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| Q |
224 |
catgcttcattaac |
237 |
Q |
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|||||||||||||| |
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| T |
25329 |
catgcttcattaac |
25342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 25132 - 25231
Alignment:
| Q |
1 |
aagaaatgcatcagaggagaatgtcactaatagccagcaaattctagtagtgg-ttgagattgtcgataatgtactggctgctcatgcttcatgaacaat |
99 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
25132 |
aagaaatgcatcagaggagaatgtcactaatagccagcaaattctagtagtggtttgagtttgttgataatgtactggctgctcatgcttcatgaacaat |
25231 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 142898 - 143002
Alignment:
| Q |
12 |
cagaggagaatgtcactaatagccagcaaattctagtagtggttgagattgtcgataatgtactggctgctcatgcttcatgaacaattaatgttacata |
111 |
Q |
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|||| ||||||||||| |||||||||||||| | ||| ||| ||||| |||| |||| |||||||||||||||||||||||||||| || ||||| |||| |
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| T |
142898 |
cagaagagaatgtcacaaatagccagcaaatcccagtggtgattgagcttgttgatagtgtactggctgctcatgcttcatgaacatttcatgtttcata |
142997 |
T |
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| Q |
112 |
ctact |
116 |
Q |
| |
|
||||| |
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| T |
142998 |
ctact |
143002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 150830 - 150921
Alignment:
| Q |
12 |
cagaggagaatgtcactaatagccagcaaattctagtagtggttgagattgtcgataatgtactggctgctcatgcttcatgaacaattaat |
103 |
Q |
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|||||||||||||||||||||||||||||| || || |||||||| |||| |||| |||||| ||| ||||| |||||||||| |||||| |
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| T |
150830 |
cagaggagaatgtcactaatagccagcaaaaccttgtggtggttgatcttgttgatagtgtacttgctactcattcttcatgaactattaat |
150921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 142941 - 142997
Alignment:
| Q |
196 |
tgagcttgttgatatagttatggctgctcatgcttcattaacaagtcatgtttcata |
252 |
Q |
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|||||||||||||| || |||||||||||||||||| |||| |||||||||||| |
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| T |
142941 |
tgagcttgttgatagtgtactggctgctcatgcttcatgaacatttcatgtttcata |
142997 |
T |
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