View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5290_low_36 (Length: 290)

Name: NF5290_low_36
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5290_low_36
NF5290_low_36
[»] chr7 (8 HSPs)
chr7 (1-290)||(18779965-18780255)
chr7 (206-276)||(18777362-18777432)
chr7 (28-89)||(25078288-25078349)
chr7 (206-271)||(18777444-18777508)
chr7 (41-85)||(4043009-4043053)
chr7 (28-106)||(18673931-18674008)
chr7 (35-72)||(25079373-25079410)
chr7 (48-85)||(31412106-31412143)
[»] chr3 (3 HSPs)
chr3 (9-155)||(1605238-1605387)
chr3 (182-290)||(1605387-1605495)
chr3 (205-277)||(29233190-29233262)
[»] chr5 (4 HSPs)
chr5 (205-271)||(34980525-34980591)
chr5 (28-72)||(3289718-3289762)
chr5 (44-88)||(17238292-17238336)
chr5 (220-290)||(34980414-34980484)
[»] chr1 (2 HSPs)
chr1 (209-267)||(39252684-39252741)
chr1 (40-68)||(10294337-10294365)
[»] chr2 (2 HSPs)
chr2 (29-80)||(14437218-14437269)
chr2 (221-278)||(28781195-28781252)
[»] chr8 (1 HSPs)
chr8 (208-278)||(33831878-33831948)
[»] chr4 (2 HSPs)
chr4 (42-89)||(4466850-4466897)
chr4 (41-89)||(43087386-43087434)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 18779965 - 18780255
Alignment:
Q  1 ctaacggtcacaatatacacacatcacccaaagaaaatatctaactacatctcacaacactctaagacaagaatataagaaaaaagaaacgagaaagata 100  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18779965 ctaacggtcacaata--cacacatcacccaaagaaaatatctaactacatctcacaacactctaagacaagaatataagaaaaaagaaacgagaaagata 18780062  T
Q  101 taaactaaaatgtttctgacttaatgcat---gtaacaaagagatagaacctatatataggaatttctatgtttgtcttgcaatttaagaaaaaacctcg 197  Q
    |||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  18780063 taaactaaaatgtttctgacttaatgcatcttgtagcaaagagatagaacctatatataggaatttctatgtttgtcttgcaatttaagaaaaaaccttg 18780162  T
Q  198 tggcatgcaagacttgccaaacaagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaataaccttacttatcttgca 290  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  18780163 tggcatgcaagacttgccaagcaagaaactaaccaagtgatggaaccaccatgcttgtgttgaacttcaagaaataaccttacttgtcttgca 18780255  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 18777362 - 18777432
Alignment:
Q  206 aagacttgccaaacaagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaataacc 276  Q
    |||||||||||||||||||| |||  || |||||||||||   ||||||||||||||||||||||| ||||    
T  18777362 aagacttgccaaacaagaaagtaaagaattgaaggaaccatattgcttgtcttgaacttcaagaaacaacc 18777432  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 25078349 - 25078288
Alignment:
Q  28 ccaaagaaaatatctaactacatctcacaacactctaagacaagaatataagaaaaaagaaa 89  Q
    |||||| ||||| |||| ||||||||||||||||||||||||||| ||||||| | ||||||    
T  25078349 ccaaagcaaatacctaattacatctcacaacactctaagacaagagtataagagagaagaaa 25078288  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 18777444 - 18777508
Alignment:
Q  206 aagacttgccaaacaagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaa 271  Q
    |||||||| |||| |||||| ||| ||||||||||||||||||| ||||||| | |||||||||||    
T  18777444 aagacttgtcaaataagaaagtaaacaagtgaaggaaccaccat-cttgtctcgcacttcaagaaa 18777508  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 4043053 - 4043009
Alignment:
Q  41 ctaactacatctcacaacactctaagacaagaatataagaaaaaa 85  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||    
T  4043053 ctaactacatctcacaacactcttagacaatagtataagaaaaaa 4043009  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 18673931 - 18674008
Alignment:
Q  28 ccaaagaaaatatctaactacatctcacaacactctaagacaagaatataagaaaaaagaaacgagaaagatataaact 106  Q
    |||||||||||| |||||||||||||| |||| |||||||  ||| ||||||| |||||||| |||  | |||||||||    
T  18673931 ccaaagaaaatacctaactacatctca-aacattctaagatcagagtataagagaaaagaaaagagccaaatataaact 18674008  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 25079410 - 25079373
Alignment:
Q  35 aaatatctaactacatctcacaacactctaagacaaga 72  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  25079410 aaatatctaactacatcttacaatactctaagacaaga 25079373  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 31412106 - 31412143
Alignment:
Q  48 catctcacaacactctaagacaagaatataagaaaaaa 85  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  31412106 catctcacaacattctaagacaagattataagaaaaaa 31412143  T

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Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 1605238 - 1605387
Alignment:
Q  9 cacaatatacacacatcacccaaagaaaatatctaactacatctcacaacactctaagacaagaatata-agaaaaaagaaacgagaaagatataaacta 107  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||| |||| | |||||||||| |||||||||||||||||    
T  1605238 cacaatatacacacaacacccaaagaaaatacctaactacatctcataacactctaagacaagagtatataaaaaaaagaaatgagaaagatataaacta 1605337  T
Q  108 aaatgtttctgacttaatgca---tgtaacaaagagatagaacctatatat 155  Q
    || |||||||||| |||||||   |||| ||||||||||||||||||||||    
T  1605338 aagtgtttctgac-taatgcaccttgtagcaaagagatagaacctatatat 1605387  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 1605387 - 1605495
Alignment:
Q  182 ttaagaaaaaacctcgtggcatgcaagacttgccaaacaagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaataaccttact 281  Q
    |||||||||||||||||||||||||||| || | || ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |    
T  1605387 ttaagaaaaaacctcgtggcatgcaagattttctaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgcacttcaagaaacaaccttaat 1605486  T
Q  282 tatcttgca 290  Q
    | |||||||    
T  1605487 tgtcttgca 1605495  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 29233190 - 29233262
Alignment:
Q  205 caagacttgccaaacaagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaataacct 277  Q
    |||||||||||| |||  ||| |||  |||||| ||||||||| || |||||||| ||||||||||| |||||    
T  29233190 caagacttgccagacagaaaagtaaataagtgatggaaccaccttggttgtcttgcacttcaagaaacaacct 29233262  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 34980591 - 34980525
Alignment:
Q  205 caagacttgccaaacaagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaa 271  Q
    ||||||||||||| ||||||| ||| |||||||||||| |||| ||||||||||| |||||||||||    
T  34980591 caagacttgccaagcaagaaagtaaacaagtgaaggaatcaccttgcttgtcttggacttcaagaaa 34980525  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 3289762 - 3289718
Alignment:
Q  28 ccaaagaaaatatctaactacatctcacaacactctaagacaaga 72  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  3289762 ccaaagaaaatacctaactacatctcacaacactctaagaaaaga 3289718  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 17238292 - 17238336
Alignment:
Q  44 actacatctcacaacactctaagacaagaatataagaaaaaagaa 88  Q
    |||||||||||| |||||||||||||| ||||||| |||||||||    
T  17238292 actacatctcacgacactctaagacaataatataataaaaaagaa 17238336  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 34980414 - 34980484
Alignment:
Q  220 aagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaataaccttacttatcttgca 290  Q
    |||||| ||| ||| |||||||| |||| |||||| |||| ||||||||||| |||||| ||| |||||||    
T  34980414 aagaaagtaaacaactgaaggaatcaccttgcttgccttgcacttcaagaaacaaccttgcttgtcttgca 34980484  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 39252684 - 39252741
Alignment:
Q  209 acttgccaaacaagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaa 267  Q
    ||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||||||||    
T  39252684 acttgtcaaacaagaaagtaaacaagtgaaggaaccacc-tgcttgtcttgaacttcaa 39252741  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 10294337 - 10294365
Alignment:
Q  40 tctaactacatctcacaacactctaagac 68  Q
    |||||||||||||||||||||||||||||    
T  10294337 tctaactacatctcacaacactctaagac 10294365  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 14437218 - 14437269
Alignment:
Q  29 caaagaaaatatctaactacatctcacaacactctaagacaagaatataaga 80  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||| |||||||    
T  14437218 caaagtaaatacctaactacatctcacaacactttaagacaagagtataaga 14437269  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 28781195 - 28781252
Alignment:
Q  221 agaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaataacctt 278  Q
    ||||| ||| ||||||||||||||||| || |||||||| ||||||||||||| ||||    
T  28781195 agaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaatatcctt 28781252  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 33831948 - 33831878
Alignment:
Q  208 gacttgccaaacaagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaataacctt 278  Q
    ||||| |||| ||||||| ||| ||||||||| ||| ||| ||||||| ||| ||||||||||||||||||    
T  33831948 gacttcccaatcaagaaagtaaacaagtgaagcaacaaccttgcttgtgttgcacttcaagaaataacctt 33831878  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 4466897 - 4466850
Alignment:
Q  42 taactacatctcacaacactctaagacaagaatataagaaaaaagaaa 89  Q
    |||||||||||||||||| |||||||||||| || |||| ||||||||    
T  4466897 taactacatctcacaacattctaagacaagagtaaaagagaaaagaaa 4466850  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 43087434 - 43087386
Alignment:
Q  41 ctaactacatctcacaacactctaagacaagaatataagaaaaaagaaa 89  Q
    |||||||||||||| |||||||||| |||||| ||| ||| ||||||||    
T  43087434 ctaactacatctcataacactctaaaacaagattatgagagaaaagaaa 43087386  T

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