View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_low_37 (Length: 285)
Name: NF5290_low_37
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 10028434 - 10028168
Alignment:
| Q |
1 |
atataaacgatataaaaatccataacattttagttcaagtgttcccttttctcagtttctgaggataaacattagtgtattaaataagatatttgtaatg |
100 |
Q |
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| T |
10028434 |
atataaacgatataaaaatccgtaacattttagttcaagtgttcccttttctcagtttctgaggataaacattagtgtataaaataagatatttgtaaag |
10028335 |
T |
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| Q |
101 |
aaagaaaatgattttggaaagcctgaaacaccagccagaagtaatagatcgtcaatgatatgtctagtaacattaattcaaatcaataaccattaaggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10028334 |
aaagaaaatgattttggaaagcctgaaacaccagccagaagtaatagatcgtcaatgatatgtctagtaacattaattcaaatcaataaccattaaggaa |
10028235 |
T |
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| Q |
201 |
gccaccctgctacctctatcaccacatgaattgaatatgccattaagcatatatatttcataattat |
267 |
Q |
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| T |
10028234 |
gccaccctgctacctctatcaccacatgaattgaatatgccattaagcatacatatttcataattat |
10028168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 10050347 - 10050276
Alignment:
| Q |
1 |
atataaacgatataaaaatccataacattttagttcaagtgttcccttttctcagtttctgaggataaacat |
72 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10050347 |
atataaacgatataaaaatccgtaacattttagttcaagtgttcccttttctcagtttctgaggataaacat |
10050276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 10062326 - 10062249
Alignment:
| Q |
188 |
aaccattaaggaagccaccctgctacctctatcaccacatgaattgaatatgccattaagcatatatatttcataatt |
265 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||| |||| || ||||||||| ||||||||||| |
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| T |
10062326 |
aaccattaaggaagccacactgctacctctatcaccatatgaattgagtatgaaatgaagcatataaatttcataatt |
10062249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 10062381 - 10062345
Alignment:
| Q |
9 |
gatataaaaatccataacattttagttcaagtgttcc |
45 |
Q |
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|||||| || ||||||||||||||||||||||||||| |
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| T |
10062381 |
gatatagaagtccataacattttagttcaagtgttcc |
10062345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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