View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_low_38 (Length: 269)
Name: NF5290_low_38
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 2 - 253
Target Start/End: Original strand, 18780314 - 18780565
Alignment:
| Q |
2 |
aaccaagacacctgttaagattttgaggatttggagaaattgaataacaagagcattaaaaggttgaatgagaataatactcgtagagaatcattttgat |
101 |
Q |
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| T |
18780314 |
aaccaagacacatgttaagattttgaggatttggagaaattgaataacaagagcattaaaaggttgaatgagaataatactcgtagagaatcattttgat |
18780413 |
T |
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| Q |
102 |
aaaaggtcgtaaaattaatacaagtgatgctcttatatagagctagaaaggggattaacaaactaacttcctaatgataaactctaactaattttgtatt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18780414 |
aaaaggtcgtaaaattaatacaagtgatgctcttatatagagctagaaaggggattaacaaactaacttcctaataataaactctaactaattttgtatt |
18780513 |
T |
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| Q |
202 |
tcacacttacccaataattgaactaattacttacactactaactatcatttt |
253 |
Q |
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| T |
18780514 |
tcacacttacccaataattgaactaattacttacactactaactatcatttt |
18780565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 1605662 - 1605748
Alignment:
| Q |
165 |
taacttcctaatgataaactctaactaattttgtatttcacacttacccaataattgaactaattacttacactactaactatcatt |
251 |
Q |
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| T |
1605662 |
taacttcctaataataaactctaactaattttgtatttcacacttaccaaataattgaactaattacttacactactaactatcatt |
1605748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 1605555 - 1605662
Alignment:
| Q |
2 |
aaccaagacacc-tgttaagattttgaggatttggagaaattgaataacaagagcattaaaaggttgaatgagaataatactcgtagagaatcattttga |
100 |
Q |
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|||||| ||||| |||||| |||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
1605555 |
aaccaacacaccatgttaaaattttgaggatttggagaaattgaatgaaaagagctttaaaaggttgaatgagaataatacacgaagagaatcattttga |
1605654 |
T |
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| Q |
101 |
taaaaggt |
108 |
Q |
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|||||||| |
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| T |
1605655 |
taaaaggt |
1605662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 1622832 - 1622868
Alignment:
| Q |
215 |
ataattgaactaattacttacactactaactatcatt |
251 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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| T |
1622832 |
ataattgaactaattacttacaccgctaactatcatt |
1622868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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