View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_low_40 (Length: 268)
Name: NF5290_low_40
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 46155475 - 46155220
Alignment:
| Q |
1 |
aagatttggtgatttggaggaagcatgctcatagtacgagaaattattgtttaaaaatctcataactaatataattttttcaaaatttattagattgaaa |
100 |
Q |
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| T |
46155475 |
aagatttggtgatttggaggaagcatgctcatagtacgataaattattgtttaaaaatctcataactaatataattttttcaaaatttattagattgaaa |
46155376 |
T |
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| Q |
101 |
aattcatcgatccaaagtaaacattcaagattacagttggacttttgtatctcatgtagtgatcgattatgtagaaggtggagtaggttagacctacacc |
200 |
Q |
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| T |
46155375 |
aattcatcgatccaaagtaaacattcaagattacagttggacttttgtatctcatgtggtgatcgattatgtagaaggtggagtaggttagacctacacc |
46155276 |
T |
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| Q |
201 |
tacagggacgtgttggttctctatgatctgtattattcaggattgttagggtctat |
256 |
Q |
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| T |
46155275 |
tacagggacgtgttggttctctatgatctgtattattcaagattgttagggtctat |
46155220 |
T |
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