View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5290_low_41 (Length: 267)

Name: NF5290_low_41
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5290_low_41
NF5290_low_41
[»] chr7 (9 HSPs)
chr7 (45-267)||(41008754-41008974)
chr7 (53-127)||(35660937-35661011)
chr7 (1-46)||(41009004-41009049)
chr7 (58-220)||(42709924-42710086)
chr7 (51-103)||(33384104-33384156)
chr7 (44-103)||(42709943-42710002)
chr7 (137-220)||(41008911-41008994)
chr7 (49-103)||(30165226-30165280)
chr7 (49-166)||(10524945-10525061)
[»] chr2 (8 HSPs)
chr2 (48-189)||(22191420-22191563)
chr2 (47-109)||(8033866-8033928)
chr2 (59-105)||(33939958-33940004)
chr2 (147-219)||(6511025-6511097)
chr2 (55-107)||(32502849-32502901)
chr2 (142-203)||(8033872-8033933)
chr2 (136-220)||(32503034-32503118)
chr2 (51-103)||(39760176-39760228)
[»] chr6 (11 HSPs)
chr6 (44-220)||(19121861-19122038)
chr6 (51-107)||(17437719-17437776)
chr6 (51-111)||(3890019-3890079)
chr6 (60-124)||(26330227-26330291)
chr6 (50-104)||(5656571-5656625)
chr6 (137-203)||(21969167-21969233)
chr6 (48-103)||(8446973-8447028)
chr6 (48-103)||(8455777-8455832)
chr6 (49-86)||(26330327-26330364)
chr6 (51-111)||(19121887-19121947)
chr6 (51-103)||(32520157-32520209)
[»] chr5 (15 HSPs)
chr5 (137-203)||(8285050-8285116)
chr5 (44-101)||(3620836-3620893)
chr5 (51-107)||(9900231-9900287)
chr5 (44-103)||(8285052-8285111)
chr5 (48-103)||(8285232-8285287)
chr5 (58-124)||(27354395-27354461)
chr5 (139-203)||(31050991-31051055)
chr5 (138-213)||(8285228-8285303)
chr5 (44-103)||(31065872-31065931)
chr5 (142-192)||(9900233-9900283)
chr5 (150-220)||(11275790-11275860)
chr5 (50-103)||(31046134-31046188)
chr5 (136-196)||(9637652-9637712)
chr5 (139-203)||(31065870-31065934)
chr5 (139-167)||(36184679-36184707)
[»] chr8 (10 HSPs)
chr8 (55-107)||(29490409-29490461)
chr8 (59-203)||(32029548-32029694)
chr8 (44-102)||(32029634-32029692)
chr8 (50-166)||(33229550-33229667)
chr8 (142-220)||(29490379-29490457)
chr8 (51-103)||(12220824-12220876)
chr8 (173-220)||(5840360-5840407)
chr8 (53-103)||(23768883-23768935)
chr8 (41-86)||(38225710-38225755)
chr8 (44-76)||(41424434-41424466)
[»] scaffold0154 (2 HSPs)
scaffold0154 (44-103)||(6214-6273)
scaffold0154 (138-220)||(6210-6292)
[»] chr4 (17 HSPs)
chr4 (49-187)||(39051239-39051376)
chr4 (138-220)||(44137396-44137478)
chr4 (44-166)||(55264562-55264685)
chr4 (49-103)||(13119375-13119429)
chr4 (49-111)||(54091012-54091074)
chr4 (49-106)||(45122538-45122595)
chr4 (135-203)||(55264619-55264687)
chr4 (44-103)||(44137415-44137474)
chr4 (142-192)||(39051322-39051372)
chr4 (150-220)||(45921867-45921937)
chr4 (147-192)||(16977267-16977312)
chr4 (142-203)||(55284045-55284106)
chr4 (50-95)||(55397428-55397473)
chr4 (44-124)||(11383005-11383084)
chr4 (136-192)||(13119369-13119425)
chr4 (136-220)||(54091014-54091098)
chr4 (136-192)||(54458755-54458811)
[»] chr3 (18 HSPs)
chr3 (52-103)||(1163419-1163470)
chr3 (49-104)||(27812296-27812351)
chr3 (44-111)||(55447168-55447235)
chr3 (49-111)||(55446977-55447039)
chr3 (136-220)||(55447170-55447254)
chr3 (44-111)||(40472856-40472923)
chr3 (138-192)||(1163420-1163474)
chr3 (59-220)||(39840666-39840826)
chr3 (51-111)||(29504886-29504946)
chr3 (51-103)||(33428919-33428971)
chr3 (136-220)||(40472837-40472921)
chr3 (44-127)||(20124214-20124297)
chr3 (49-103)||(48338342-48338396)
chr3 (49-95)||(49547619-49547665)
chr3 (44-101)||(39840685-39840742)
chr3 (53-102)||(42045897-42045946)
chr3 (55-103)||(20124047-20124095)
chr3 (55-103)||(41709283-41709331)
[»] scaffold0340 (2 HSPs)
scaffold0340 (141-219)||(10881-10959)
scaffold0340 (55-103)||(10910-10958)
[»] chr1 (12 HSPs)
chr1 (136-220)||(1818371-1818455)
chr1 (136-219)||(6219633-6219716)
chr1 (44-103)||(15395219-15395278)
chr1 (49-107)||(38783923-38783981)
chr1 (136-213)||(15395207-15395284)
chr1 (47-103)||(1818377-1818433)
chr1 (138-190)||(46410682-46410734)
chr1 (53-103)||(40649812-40649862)
chr1 (58-103)||(17347145-17347189)
chr1 (147-196)||(20993908-20993957)
chr1 (44-104)||(27293306-27293366)
chr1 (148-192)||(27562704-27562748)
[»] scaffold0528 (1 HSPs)
scaffold0528 (139-203)||(1886-1950)
[»] scaffold0360 (1 HSPs)
scaffold0360 (173-213)||(4798-4838)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 45 - 267
Target Start/End: Complemental strand, 41008974 - 41008754
Alignment:
Q  45 tctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctctttctatatttttgtcctgacaaggggacttaa 144  Q
    |||||||||||||||||||||||||||||| | | |||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  41008974 tctctgactctattaatattttaaaatagtctctatctttgttaaaagtttctcaattaggtcc-tctttctatatttttgtcctgacaaggg-acttaa 41008877  T
Q  145 tcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgacttacggtgaccaatttaatgatttactc 244  Q
    |||| |   |||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||    
T  41008876 tcgaaatttttttgataaagacggaaactattttaaaatattaatagaatcacagactagtttgagaatgacttacggtgaccactttaatgatttactc 41008777  T
Q  245 ggattttggtctatgaatgatat 267  Q
    |||||||||||||||||||||||    
T  41008776 ggattttggtctatgaatgatat 41008754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 35661011 - 35660937
Alignment:
Q  53 tctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctctttctatatttttgtc 127  Q
    ||||||||||||| ||| |||||  |||||||||||| ||||||||||||||||| |||||| ||| ||||||||    
T  35661011 tctattaatatttcaaattagttcttgtctttgttaaaagtttctcaattagatcgctctttttatgtttttgtc 35660937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41009049 - 41009004
Alignment:
Q  1 gtacttctccaccgagaattttggtgagtaaaccaccaacttggtc 46  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  41009049 gtacttctccaccaagaattttggtgagtaaaccaccaacttggtc 41009004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 220
Target Start/End: Complemental strand, 42710086 - 42709924
Alignment:
Q  58 taatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctctttctatatttttgtcct--gacaaggggacttaatcgagaaactt 155  Q
    |||||||| |||||||| || |||||||| || |||||||||||||||  | | ||||||| ||||| || |  ||| |||| ||||||| |||||||||    
T  42710086 taatatttcaaaatagtctaagtctttgtcaaaagtttctcaattagactcatgtttctatgttttt-tcatatgacgaggg-acttaattgagaaactt 42709989  T
Q  156 ttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgacttac 220  Q
    |||||||||||    | |||||||||||||||||||| || ||||||  || |||||| ||||||    
T  42709988 ttgacaaagacattgactattttaaaatattaatagagtcggagactgatttgagaatcacttac 42709924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 33384104 - 33384156
Alignment:
Q  51 actctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||||||    
T  33384104 actctattaatattttaaaatagtctatgtcttcgttaaaagtttctcaatta 33384156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 42709943 - 42710002
Alignment:
Q  44 gtctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    ||||| |||||||||||||||||||||||||  |||||||||| || |||||||||||||    
T  42709943 gtctccgactctattaatattttaaaatagtcaatgtctttgtcaaaagtttctcaatta 42710002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 41008911 - 41008994
Alignment:
Q  137 ggacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgacttac 220  Q
    |||| |||| ||||||||||| |||||||  || | |||||||||||||||||||| ||||||| || || || ||||||||||    
T  41008911 ggacctaattgagaaacttttaacaaagatagagactattttaaaatattaatagagtcagagattaatttgaaaatgacttac 41008994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 30165226 - 30165280
Alignment:
Q  49 tgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    ||||| ||||||||||| |||||||||||| ||||||| || |||| ||||||||    
T  30165226 tgactttattaatatttgaaaatagtttatatctttgtcaaaagttgctcaatta 30165280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 166
Target Start/End: Original strand, 10524945 - 10525061
Alignment:
Q  49 tgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctctttctatatttttgt--cctgacaaggggacttaatc 146  Q
    ||||| ||||||||||  ||| |||| |||||  |||| || |||||||||||||||||||| | | ||| |||||||  | |||| | ||||| ||||     
T  10524945 tgactttattaatattacaaattagtctatgt--ttgtcaaaagtttctcaattagatccctatctttatgtttttgtcacatgacga-gggacctaatt 10525041  T
Q  147 gagaaacttttgacaaagac 166  Q
    ||||||||||||||||||||    
T  10525042 gagaaacttttgacaaagac 10525061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 22191563 - 22191420
Alignment:
Q  48 ctgactctattaatattttaaaatagtttatgtc-tttgttaacagtttctcaattagatccctctttctatatttttgt--cctgacaaggggacttaa 144  Q
    ||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||| | | | ||| |||||||||  | |||| | |||||||||    
T  22191563 ctgactctattaatattttaaaatagtctatgtcttttgttaaaagtttttcaattagattcatatctctttatttttgtcacatgacga-gggacttaa 22191465  T
Q  145 tcgagaaacttttgacaaagacggaaagtattttaaaatattaat 189  Q
    | ||||||||||||||||||||  | | |||||||||||||||||    
T  22191464 tagagaaacttttgacaaagacaaagactattttaaaatattaat 22191420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 8033928 - 8033866
Alignment:
Q  47 tctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccc 109  Q
    ||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||||    
T  8033928 tctgactttattaatattttaaaatggtttatgtctttgtcaaaagtttctcaattagatccc 8033866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 33939958 - 33940004
Alignment:
Q  59 aatattttaaaatagtttatgtctttgttaacagtttctcaattaga 105  Q
    |||||||||||||||| ||||||||||| || |||||||||||||||    
T  33939958 aatattttaaaatagtatatgtctttgtcaaaagtttctcaattaga 33940004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 6511097 - 6511025
Alignment:
Q  147 gagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgactta 219  Q
    |||||| |||||||||||| ||| | |||||| ||||||||| ||||||| |||||| || || |||||||||    
T  6511097 gagaaatttttgacaaagatggagactattttgaaatattaacagaatcatagactaatttgaaaatgactta 6511025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 32502849 - 32502901
Alignment:
Q  55 tattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatc 107  Q
    ||||| ||||| ||||||||| |||||||||||||  ||||||||||||||||    
T  32502849 tattagtatttcaaaatagttcatgtctttgttaaatgtttctcaattagatc 32502901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 8033872 - 8033933
Alignment:
Q  142 taatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagacta 203  Q
    |||| ||||||||||||||||||||  |||  ||||||||||||||||| | ||||| ||||    
T  8033872 taattgagaaacttttgacaaagacataaaccattttaaaatattaataaagtcagaaacta 8033933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 32503034 - 32503118
Alignment:
Q  136 gggacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgacttac 220  Q
    |||||||||| ||||| ||||||||||||||    | ||||||||||||| |||||| |  ||||||| || || ||||||||||    
T  32503034 gggacttaattgagaatcttttgacaaagacaatgactattttaaaatatcaatagagtgtgagactaatttgataatgacttac 32503118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 39760176 - 39760228
Alignment:
Q  51 actctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    ||||||||||||||| |||||||| ||||| ||| | || |||||||||||||    
T  39760176 actctattaatatttcaaaatagtctatgtttttatcaaaagtttctcaatta 39760228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 220
Target Start/End: Complemental strand, 19122038 - 19121861
Alignment:
Q  44 gtctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctctttctatatttttgtcc--tgacaaggggact 141  Q
    |||| ||||||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||   | ||  ||| |||||||||  |||  | |||||     
T  19122038 gtctatgactctattaatatttcaaactagtttatgtctttgttagaagtttctcaattagattattgttgttatgtttttgtccgatgatga-gggacc 19121940  T
Q  142 taatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgacttac 220  Q
    ||||  |||| |||||||||||||  |||| || ||||||||||||||||| | || |||||||| |||| || |||||    
T  19121939 taatttagaagcttttgacaaagatagaaactagtttaaaatattaatagagttagcgactagtttgagagtggcttac 19121861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 17437776 - 17437719
Alignment:
Q  51 actctattaatattttaaaa-tagtttatgtctttgttaacagtttctcaattagatc 107  Q
    ||||||||||||||| |||| |||||| |||||||||||| |||||||||||||||||    
T  17437776 actctattaatatttcaaaaatagtttctgtctttgttaaaagtttctcaattagatc 17437719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 3890079 - 3890019
Alignment:
Q  51 actctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctc 111  Q
    |||||||||||||| |||| ||||| |||||||||| || |||||||||||||| ||||||    
T  3890079 actctattaatattctaaactagttcatgtctttgtcaaaagtttctcaattaggtccctc 3890019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 26330227 - 26330291
Alignment:
Q  60 atattttaaaatagtttatgtctttgttaacagtttctcaattagatccctctttctatattttt 124  Q
    |||||||||||||||  |||||||||| || |||||||||||||||||| | ||||||| |||||    
T  26330227 atattttaaaatagtcaatgtctttgtcaaaagtttctcaattagatccatgtttctatgttttt 26330291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 5656625 - 5656571
Alignment:
Q  50 gactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattag 104  Q
    |||| ||||||||||||||| |||| | |||||||||||| ||||||||||||||    
T  5656625 gactatattaatattttaaactagtctctgtctttgttaaaagtttctcaattag 5656571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 21969233 - 21969167
Alignment:
Q  137 ggacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagacta 203  Q
    ||||||||| ||||||||||||| |||||| ||   |||||||||||||||||||| |||| |||||    
T  21969233 ggacttaattgagaaacttttgataaagacagagtttattttaaaatattaatagagtcagtgacta 21969167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 8446973 - 8447028
Alignment:
Q  48 ctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    |||| ||||||||||||| ||||||||  ||||||||||||| ||||| |||||||    
T  8446973 ctgattctattaatatttcaaaatagtcaatgtctttgttaaaagtttttcaatta 8447028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 8455777 - 8455832
Alignment:
Q  48 ctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    |||| ||||||||||||| ||||||||  ||||||||||||| ||||| |||||||    
T  8455777 ctgattctattaatatttcaaaatagtcaatgtctttgttaaaagtttttcaatta 8455832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 26330364 - 26330327
Alignment:
Q  49 tgactctattaatattttaaaatagtttatgtctttgt 86  Q
    |||||||||||||||||||||||||||  |||||||||    
T  26330364 tgactctattaatattttaaaatagttgttgtctttgt 26330327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 19121887 - 19121947
Alignment:
Q  51 actctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctc 111  Q
    ||||||||||||||||||| |||||| | ||||||| || || |||| |||||| ||||||    
T  19121887 actctattaatattttaaactagtttctatctttgtcaaaagcttctaaattaggtccctc 19121947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 32520209 - 32520157
Alignment:
Q  51 actctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    |||||||||||||||||||||||| ||||| ||  | |||||||| |||||||    
T  32520209 actctattaatattttaaaatagtctatgttttaatcaacagtttgtcaatta 32520157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 8285116 - 8285050
Alignment:
Q  137 ggacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagacta 203  Q
    ||||||||| |||||||||||||||||||| |||  |||||||||||||||||||| ||| ||||||    
T  8285116 ggacttaattgagaaacttttgacaaagacagaacttattttaaaatattaatagagtcatagacta 8285050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 3620836 - 3620893
Alignment:
Q  44 gtctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaat 101  Q
    |||||||||||| ||||||||||||| |||||| |||||||||||| ||||| |||||    
T  3620836 gtctctgactctgttaatattttaaactagtttctgtctttgttaatagtttttcaat 3620893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 9900231 - 9900287
Alignment:
Q  51 actctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatc 107  Q
    |||||||||||||||||||||| ||| | ||||||| || |||||||||||||||||    
T  9900231 actctattaatattttaaaataatttttatctttgtcaaaagtttctcaattagatc 9900287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 8285052 - 8285111
Alignment:
Q  44 gtctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    |||| ||||||||||||||||||||||||  || ||||||||| || |||||||||||||    
T  8285052 gtctatgactctattaatattttaaaataagttctgtctttgtcaaaagtttctcaatta 8285111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 8285287 - 8285232
Alignment:
Q  48 ctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    |||||| |||||||||||||||||||| ||| ||||||| || |||||||||||||    
T  8285287 ctgactatattaatattttaaaatagtctatatctttgtcaaaagtttctcaatta 8285232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 27354461 - 27354395
Alignment:
Q  58 taatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctctttctatattttt 124  Q
    |||||||| |||||||||| ||||||||| || ||||| |||||||||||| | ||||||| |||||    
T  27354461 taatatttgaaaatagtttttgtctttgtcaaaagtttatcaattagatccatatttctattttttt 27354395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 31051055 - 31050991
Alignment:
Q  139 acttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagacta 203  Q
    ||||||| |||||||||||||||||||||   | |||||| |||||||| |||| ||||||||||    
T  31051055 acttaattgagaaacttttgacaaagacgaggactattttgaaatattagtagagtcagagacta 31050991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 8285228 - 8285303
Alignment:
Q  138 gacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaat 213  Q
    |||||||| |||||||||||||||||||   | | |||||||||||||||||| | |||| ||||| || ||||||    
T  8285228 gacttaattgagaaacttttgacaaagatatagactattttaaaatattaatatagtcagggactaatttgagaat 8285303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 31065872 - 31065931
Alignment:
Q  44 gtctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    |||||| ||||||||||||||| ||||||||   ||||||||| || |||||||||||||    
T  31065872 gtctctaactctattaatatttcaaaatagtcattgtctttgtcaaaagtttctcaatta 31065931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 9900283 - 9900233
Alignment:
Q  142 taatcgagaaacttttgacaaagacggaaagtattttaaaatattaataga 192  Q
    |||| |||||||||||||||||||   ||| ||||||||||||||||||||    
T  9900283 taattgagaaacttttgacaaagataaaaattattttaaaatattaataga 9900233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 11275790 - 11275860
Alignment:
Q  150 aaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgacttac 220  Q
    |||||||||||||| |  |||| || ||||||||||||||| | |||||||||| || |||||||| ||||    
T  11275790 aaacttttgacaaatatagaaactaatttaaaatattaataaagtcagagactaatttgagaatgatttac 11275860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 31046188 - 31046134
Alignment:
Q  50 gactctattaatattttaaaatagtttatgtctttgttaacag-tttctcaatta 103  Q
    ||||||||||||||||||||||||| |||| |||||| || || |||||||||||    
T  31046188 gactctattaatattttaaaatagtctatgcctttgtcaaaagttttctcaatta 31046134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 9637712 - 9637652
Alignment:
Q  136 gggacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatca 196  Q
    |||| ||||| || ||| || |||||||||| || | ||||||||||||||||||||||||    
T  9637712 gggatttaattgaaaaatttatgacaaagacagagactattttaaaatattaatagaatca 9637652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 31065934 - 31065870
Alignment:
Q  139 acttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagacta 203  Q
    ||||||| ||||||||||||||||||||    | |||||| ||||||||||||| | ||||||||    
T  31065934 acttaattgagaaacttttgacaaagacaatgactattttgaaatattaatagagttagagacta 31065870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 167
Target Start/End: Complemental strand, 36184707 - 36184679
Alignment:
Q  139 acttaatcgagaaacttttgacaaagacg 167  Q
    |||||||||||||||||||||||||||||    
T  36184707 acttaatcgagaaacttttgacaaagacg 36184679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 29490409 - 29490461
Alignment:
Q  55 tattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatc 107  Q
    |||||||||||||||||||||| ||||||||| || |||||||||||||||||    
T  29490409 tattaatattttaaaatagtttttgtctttgtaaaaagtttctcaattagatc 29490461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 32029548 - 32029694
Alignment:
Q  59 aatattttaaaatagtttatgtcttt-gttaacagtttctcaattagatccctctttctatatttttgtcc--tgacaaggggacttaatcgagaaactt 155  Q
    ||||||| |||||||| ||||||||| || || ||||||||||||| | || | ||||||| ||||| ||   ||||||||| ||| ||| |||||| ||    
T  32029548 aatatttcaaaatagtctatgtcttttgtcaaaagtttctcaattaaacccatgtttctatgtttttttcacatgacaaggg-actaaattgagaaattt 32029646  T
Q  156 ttgacaaagacggaaagtattttaaaatattaatagaatcagagacta 203  Q
    |||||||||||   || ||||||||||||| |||||| ||||||||||    
T  32029647 ttgacaaagacatgaactattttaaaatataaatagagtcagagacta 32029694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 32029692 - 32029634
Alignment:
Q  44 gtctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaatt 102  Q
    ||||||||||||||| |||||||||||||||| |||||||||| || | ||||||||||    
T  32029692 gtctctgactctatttatattttaaaatagttcatgtctttgtcaaaaatttctcaatt 32029634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 166
Target Start/End: Complemental strand, 33229667 - 33229550
Alignment:
Q  50 gactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctctttctatatttttgt--cctgacaaggggacttaatcg 147  Q
    |||| ||||||||||||||| |||| | | | ||||| || |||||||||||||||||||| | | ||| |||||||  | |||| | ||||| |||| |    
T  33229667 gactttattaatattttaaattagtctctctgtttgtcaaaagtttctcaattagatccctgtctttatgtttttgtcacatgacga-gggacctaattg 33229569  T
Q  148 agaaacttttgacaaagac 166  Q
    |||||||||||||||||||    
T  33229568 agaaacttttgacaaagac 33229550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 29490457 - 29490379
Alignment:
Q  142 taatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgacttac 220  Q
    |||| ||||||||||| ||||||||  ||| |||||||||||||||||| ||||| |||||| || || | ||||||||    
T  29490457 taattgagaaactttttacaaagacaaaaactattttaaaatattaatataatcatagactaatttgatagtgacttac 29490379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 12220876 - 12220824
Alignment:
Q  51 actctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    ||||| |||||||||||||||| | | |||||||||||| |||||||||||||    
T  12220876 actcttttaatattttaaaataatctttgtctttgttaaaagtttctcaatta 12220824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 5840407 - 5840360
Alignment:
Q  173 tattttaaaatattaatagaatcagagactagttggagaatgacttac 220  Q
    ||||||||||||||||||||||||||||||| || |||| | ||||||    
T  5840407 tattttaaaatattaatagaatcagagactaatttgagagtaacttac 5840360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 23768935 - 23768883
Alignment:
Q  53 tctattaatatttt--aaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    ||||||||||||||  |||||||||||||| ||||| || |||||||||||||    
T  23768935 tctattaatatttttcaaaatagtttatgtttttgtcaaaagtttctcaatta 23768883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 38225755 - 38225710
Alignment:
Q  41 ttggtctctgactctattaatattttaaaatagtttatgtctttgt 86  Q
    |||||| ||||||||||||||| |||||||| ||| ||||||||||    
T  38225755 ttggtccctgactctattaataatttaaaatggttcatgtctttgt 38225710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 41424434 - 41424466
Alignment:
Q  44 gtctctgactctattaatattttaaaatagttt 76  Q
    |||||||||||||||||||||||||| ||||||    
T  41424434 gtctctgactctattaatattttaaattagttt 41424466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 6273 - 6214
Alignment:
Q  44 gtctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    |||| ||||||||||||||||| |||||||||| || ||||||||| |||||||||||||    
T  6273 gtctttgactctattaatatttcaaaatagtttttgcctttgttaaaagtttctcaatta 6214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 6210 - 6292
Alignment:
Q  138 gacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgacttac 220  Q
    |||||||| ||||||||||| |||||| |  ||| |||||| ||||||||||||| ||| |||||| || |||||| ||||||    
T  6210 gacttaattgagaaacttttaacaaaggcaaaaactattttgaaatattaatagagtcaaagactaatttgagaataacttac 6292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 39051376 - 39051239
Alignment:
Q  49 tgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctctttctatatttttgt--cctgacaaggggacttaatc 146  Q
    ||||||||||||||||||||||||||   ||||||||| || |||||||||||||||||  | | | ||| |||||||  | ||||||   ||||||||     
T  39051376 tgactctattaatattttaaaatagtcactgtctttgtcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa---gacttaatt 39051280  T
Q  147 gagaaacttttgacaaagacggaaagtattttaaaatatta 187  Q
    |||||||||||||  ||||| || | |||||| ||||||||    
T  39051279 gagaaacttttgatcaagacagagactattttgaaatatta 39051239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 44137478 - 44137396
Alignment:
Q  138 gacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgacttac 220  Q
    |||||||| || ||| ||||||||||||| || | |||||| ||||||||||||| |||||||||| || |||||| ||||||    
T  44137478 gacttaattgataaatttttgacaaagacagatactattttgaaatattaatagagtcagagactaatttgagaatcacttac 44137396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 55264685 - 55264562
Alignment:
Q  44 gtctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctctttctatatttttgtcctgacaagg----gga 139  Q
    |||||||| ||||||||||||| |||| ||| | ||||||||| || |||||||||||||  ||||  | ||||| ||||||||   ||| ||    |||    
T  55264685 gtctctgaatctattaatatttcaaaagagtctgtgtctttgtcaaaagtttctcaattaattccccgtctctatgtttttgtc---acatggatatgga 55264589  T
Q  140 cttaatcgagaaacttttgacaaagac 166  Q
    |||||| ||||||||||||||||||||    
T  55264588 cttaattgagaaacttttgacaaagac 55264562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 13119429 - 13119375
Alignment:
Q  49 tgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    ||||||||||||||||| ||||||||   |||||||||||| |||||||||||||    
T  13119429 tgactctattaatatttcaaaatagtccctgtctttgttaaaagtttctcaatta 13119375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 54091074 - 54091012
Alignment:
Q  49 tgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctc 111  Q
    |||||| |||||||||||||| |||| |||||||||||  | |||||||||||||| ||||||    
T  54091074 tgactcaattaatattttaaactagtatatgtctttgtccaaagtttctcaattaggtccctc 54091012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 45122595 - 45122538
Alignment:
Q  49 tgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagat 106  Q
    ||||| |||||||||||||||||| ||||||||||||| ||  |||| ||||||||||    
T  45122595 tgactttattaatattttaaaataatttatgtctttgtgaaatgtttttcaattagat 45122538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 55264619 - 55264687
Alignment:
Q  135 ggggacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagacta 203  Q
    ||||| ||||| ||||||||||||||||||||  | | | |||| ||||||||||||| ||||||||||    
T  55264619 ggggaattaattgagaaacttttgacaaagacacagactcttttgaaatattaatagattcagagacta 55264687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 44137415 - 44137474
Alignment:
Q  44 gtctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    |||||||||||||||||||||| |||||||| | ||||||||| || | ||| |||||||    
T  44137415 gtctctgactctattaatatttcaaaatagtatctgtctttgtcaaaaatttatcaatta 44137474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 39051322 - 39051372
Alignment:
Q  142 taatcgagaaacttttgacaaagacggaaagtattttaaaatattaataga 192  Q
    |||| |||||||||||||||||||| |  | ||||||||||||||||||||    
T  39051322 taattgagaaacttttgacaaagacagtgactattttaaaatattaataga 39051372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 45921867 - 45921937
Alignment:
Q  150 aaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgacttac 220  Q
    ||||||||||||||||   ||  || ||||||||||||||| | |||||||||| || |||||||||||||    
T  45921867 aaacttttgacaaagaaaaaagttactttaaaatattaataaagtcagagactaattcgagaatgacttac 45921937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 16977267 - 16977312
Alignment:
Q  147 gagaaacttttgacaaagacggaaagtattttaaaatattaataga 192  Q
    |||||||| |||||||||||||| |||| ||| |||||||||||||    
T  16977267 gagaaactattgacaaagacggagagtagttttaaatattaataga 16977312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 55284045 - 55284106
Alignment:
Q  142 taatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagacta 203  Q
    ||||||| ||||||||| ||||||| |||| ||  || ||||||||||||||| ||||||||    
T  55284045 taatcgaaaaacttttggcaaagacagaaactagattgaaatattaatagaattagagacta 55284106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 55397428 - 55397473
Alignment:
Q  50 gactctattaatattttaaaatagtttatgtctttgttaacagttt 95  Q
    |||| |||||||||||||||||||||| | |||||||||| |||||    
T  55397428 gactttattaatattttaaaatagtttttatctttgttaaaagttt 55397473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 11383084 - 11383005
Alignment:
Q  44 gtctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctctttctatattttt 124  Q
    |||| ||||| || |||||||||||||||| | |||||||||| || ||||||| ||||| |||| | ||||||| |||||    
T  11383084 gtctatgactttagtaatattttaaaatag-tcatgtctttgtcaaaagtttcttaattaaatccatgtttctatgttttt 11383005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 13119369 - 13119425
Alignment:
Q  136 gggacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaataga 192  Q
    |||||||||| ||||||||||| |||||||| |  | |||||| |||||||||||||    
T  13119369 gggacttaattgagaaacttttaacaaagacagggactattttgaaatattaataga 13119425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 54091014 - 54091098
Alignment:
Q  136 gggacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgacttac 220  Q
    ||||| |||| |||||||||| |||||||||  | | || |||||||||||||| || |||  ||||| || |||||||||||||    
T  54091014 gggacctaattgagaaactttggacaaagacatatactagtttaaaatattaattgagtcaatgactaatttgagaatgacttac 54091098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 54458755 - 54458811
Alignment:
Q  136 gggacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaataga 192  Q
    ||||| ||||||||| ||||||||||||||| || | || ||| |||||||||||||    
T  54458755 gggacctaatcgagacacttttgacaaagacagatattagtttgaaatattaataga 54458811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 1163419 - 1163470
Alignment:
Q  52 ctctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    ||||||||||||||||||||||||||||| ||||| || |||||||||||||    
T  1163419 ctctattaatattttaaaatagtttatgtgtttgtcaaaagtttctcaatta 1163470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 27812351 - 27812296
Alignment:
Q  49 tgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattag 104  Q
    ||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||    
T  27812351 tgactctattactatttaaaaatagtctatgtctttgttaaaagtttctcaattag 27812296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 55447235 - 55447168
Alignment:
Q  44 gtctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctc 111  Q
    |||||||||||| |||||||||||||||||| | ||||||| | || ||||||||||||| |||||||    
T  55447235 gtctctgactctcttaatattttaaaatagtctctgtctttctcaaaagtttctcaattaaatccctc 55447168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 55446977 - 55447039
Alignment:
Q  49 tgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctc 111  Q
    ||||||||||||||||| ||||||||  ||||||||||||| | ||||||||||| |||||||    
T  55446977 tgactctattaatatttcaaaatagtccatgtctttgttaaaattttctcaattaaatccctc 55447039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 55447170 - 55447254
Alignment:
Q  136 gggacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgacttac 220  Q
    |||| ||||| ||||||||||||| |||||| || | |||||||||||||||| ||| |||||||||  || |||||| ||||||    
T  55447170 gggatttaattgagaaacttttgagaaagacagagactattttaaaatattaagagagtcagagactgatttgagaatcacttac 55447254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 40472856 - 40472923
Alignment:
Q  44 gtctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctc 111  Q
    |||| |||||||||||| |||||||| |||||||| ||||||| || |||||||| ||||| ||||||    
T  40472856 gtctttgactctattaaaattttaaactagtttatttctttgtcaaaagtttctcgattaggtccctc 40472923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 1163474 - 1163420
Alignment:
Q  138 gacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaataga 192  Q
    |||||||| ||||||||||||||||| ||  ||| ||||||||||||||||||||    
T  1163474 gacttaattgagaaacttttgacaaacacataaactattttaaaatattaataga 1163420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 39840826 - 39840666
Alignment:
Q  59 aatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctctttctatattt-ttgtcctgacaaggggacttaatcgagaaactttt 157  Q
    ||||||| ||||||||  ||| |||||| || ||||||||||||||| || | ||||||| ||| ||  | |||| |||| ||||| | |||||||||||    
T  39840826 aatatttcaaaatagtccatgcctttgtcaaaagtttctcaattagacccatgtttctatgtttattcacatgacgaggg-acttatt-gagaaactttt 39840729  T
Q  158 gacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgacttac 220  Q
    |||||| ||    | |||||| ||||||||||||| |||||||||| || |||||| ||||||    
T  39840728 gacaaaaacaatgactattttgaaatattaatagagtcagagactaatttgagaatcacttac 39840666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 29504946 - 29504886
Alignment:
Q  51 actctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctc 111  Q
    ||||||||||||||||||| |||||| | |||||||||| |||||||| ||| | ||||||    
T  29504946 actctattaatattttaaactagtttttatctttgttaaaagtttctcgatttggtccctc 29504886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 33428919 - 33428971
Alignment:
Q  51 actctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    ||||||||||||||| ||||||||| || ||||||| || |||||||||||||    
T  33428919 actctattaatatttcaaaatagttcatatctttgtcaaaagtttctcaatta 33428971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 40472921 - 40472837
Alignment:
Q  136 gggacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgacttac 220  Q
    ||||| ||||||||||||||||||||||||   ||| || |||||||| |||||||| ||| |||||| || |||| | ||||||    
T  40472921 gggacctaatcgagaaacttttgacaaagaaataaactagtttaaaattttaatagagtcaaagactaatttgagagtaacttac 40472837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 20124297 - 20124214
Alignment:
Q  44 gtctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatccctctttctatatttttgtc 127  Q
    |||||||||||||| ||||||| ||||||||   ||| ||||| || ||||| |||||||||||| | | ||||| ||||||||    
T  20124297 gtctctgactctatcaatatttcaaaatagtcattgtttttgtcaaaagtttttcaattagatccatgtctctatgtttttgtc 20124214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 48338342 - 48338396
Alignment:
Q  49 tgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    |||||||||||||| || ||||||||  |||||||||| || |||||||||||||    
T  48338342 tgactctattaatacttcaaaatagtccatgtctttgtcaaaagtttctcaatta 48338396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 49547619 - 49547665
Alignment:
Q  49 tgactctattaatattttaaaatagtttatgtctttgttaacagttt 95  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||    
T  49547619 tgactctattaatattttaaaaaaaattatgtctttgttaaaagttt 49547665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 39840685 - 39840742
Alignment:
Q  44 gtctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaat 101  Q
    |||||||||||||||||||||| ||||||||   ||| ||||| || |||||||||||    
T  39840685 gtctctgactctattaatatttcaaaatagtcattgtttttgtcaaaagtttctcaat 39840742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 42045946 - 42045897
Alignment:
Q  53 tctattaatattttaaaatagtttatgtctttgttaacagtttctcaatt 102  Q
    ||||||||||||| |||||||| ||||||||||| || ||||| ||||||    
T  42045946 tctattaatatttcaaaatagtatatgtctttgtcaaaagtttttcaatt 42045897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 20124047 - 20124095
Alignment:
Q  55 tattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    ||||||||||| ||||||||| || ||||||| || |||||||||||||    
T  20124047 tattaatatttcaaaatagttcatctctttgtcaaaagtttctcaatta 20124095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 41709331 - 41709283
Alignment:
Q  55 tattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    |||||||||||||||  ||||||| |||||||||| ||||| |||||||    
T  41709331 tattaatattttaaataagtttatatctttgttaaaagtttttcaatta 41709283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 10959 - 10881
Alignment:
Q  141 ttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgactta 219  Q
    ||||| |||||||||||||||||||   ||| |||||||||||||||||| ||||| |||||| || |||||| |||||    
T  10959 ttaattgagaaacttttgacaaagatataaactattttaaaatattaataaaatcatagactaattagagaatcactta 10881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 10910 - 10958
Alignment:
Q  55 tattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    |||||||||||||||||||||||| ||||||| || |||||||||||||    
T  10910 tattaatattttaaaatagtttatatctttgtcaaaagtttctcaatta 10958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 1818371 - 1818455
Alignment:
Q  136 gggacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgacttac 220  Q
    |||||||||||||||||| ||| | ||| || |||| |||||||||||||||||||| ||||| | || || |||||| ||||||    
T  1818371 gggacttaatcgagaaacatttaataaaaacagaaactattttaaaatattaatagagtcagatattaatttgagaatcacttac 1818455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 6219716 - 6219633
Alignment:
Q  136 gggacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaatgactta 219  Q
    ||||| |||| |||||| ||||||||||||| |  | || ||||||||||||||| ||||| |||||||||  |||||||||||    
T  6219716 gggacctaattgagaaatttttgacaaagacagtgactaatttaaaatattaataaaatcatagactagtttaagaatgactta 6219633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 15395219 - 15395278
Alignment:
Q  44 gtctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    |||| |||||||||||||||||||||||||| | |||||||||||| |  ||||||||||    
T  15395219 gtctatgactctattaatattttaaaatagtctctgtctttgttaaaaaattctcaatta 15395278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 38783923 - 38783981
Alignment:
Q  49 tgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattagatc 107  Q
    ||||||||||||||||||||||||||   ||||||||| || ||||||| |||||||||    
T  38783923 tgactctattaatattttaaaatagtcattgtctttgtcaaaagtttcttaattagatc 38783981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 15395284 - 15395207
Alignment:
Q  136 gggacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagactagttggagaat 213  Q
    |||||||||| |||||  |||| |||||||| || | |||||||||||||||||||| ||| |||||| || ||||||    
T  15395284 gggacttaattgagaattttttaacaaagacagagactattttaaaatattaatagagtcatagactaatttgagaat 15395207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 1818433 - 1818377
Alignment:
Q  47 tctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||  ||||||| ||||    
T  1818433 tctgactctattaatattttaaaatagtttctgtttttattaaatgtttctcgatta 1818377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 46410734 - 46410682
Alignment:
Q  138 gacttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaata 190  Q
    ||||||||||| ||||||||||||||||| || | |||||| |||||||||||    
T  46410734 gacttaatcgaaaaacttttgacaaagactgagactattttgaaatattaata 46410682  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 40649812 - 40649862
Alignment:
Q  53 tctattaatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    ||||||||||||| ||||| ||  ||||||||||||| |||||||||||||    
T  40649812 tctattaatatttcaaaatggtacatgtctttgttaaaagtttctcaatta 40649862  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 17347145 - 17347189
Alignment:
Q  58 taatattttaaaatagtttatgtctttgttaacagtttctcaatta 103  Q
    |||||||  ||||||||||||||||||||||| |||||||||||||    
T  17347145 taatattacaaaatagtttatgtctttgttaa-agtttctcaatta 17347189  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 20993957 - 20993908
Alignment:
Q  147 gagaaacttttgacaaagacggaaagtattttaaaatattaatagaatca 196  Q
    ||||||| ||||||||||||||||| |||||| |  ||||||||||||||    
T  20993957 gagaaacatttgacaaagacggaaactattttgagttattaatagaatca 20993908  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 27293306 - 27293366
Alignment:
Q  44 gtctctgactctattaatattttaaaatagtttatgtctttgttaacagtttctcaattag 104  Q
    |||||||||||||||||||||| ||| |||||  | ||||||  || ||||||||||||||    
T  27293306 gtctctgactctattaatatttcaaattagttcttatctttgccaaaagtttctcaattag 27293366  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 27562748 - 27562704
Alignment:
Q  148 agaaacttttgacaaagacggaaagtattttaaaatattaataga 192  Q
    ||||||||||||||||||| |||| || ||| |||||||||||||    
T  27562748 agaaacttttgacaaagacagaaattaatttgaaatattaataga 27562704  T

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Target: scaffold0528 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 1886 - 1950
Alignment:
Q  139 acttaatcgagaaacttttgacaaagacggaaagtattttaaaatattaatagaatcagagacta 203  Q
    ||||||| |||||||||||||||||||||   | |||||| |||||||| |||| ||||||||||    
T  1886 acttaattgagaaacttttgacaaagacgaggactattttgaaatattagtagagtcagagacta 1950  T

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Target: scaffold0360 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 4798 - 4838
Alignment:
Q  173 tattttaaaatattaatagaatcagagactagttggagaat 213  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  4798 tattttaaaatattaatagaatcagagactaatttgagaat 4838  T

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