View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_low_42 (Length: 267)
Name: NF5290_low_42
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 29849958 - 29849727
Alignment:
| Q |
18 |
gaaggaattttctgctattttgtagagaaaattcaattttctcattcataactcttgtatttctccttcgtcttttggnnnnnnnnnnnnnnnnnnccct |
117 |
Q |
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| T |
29849958 |
gaaggaattttctgctattttctagagaaaattcaattttctcattcataacgct-gtatttctccttcgtcttttggaaaaagaaaaaaaaaa---cct |
29849863 |
T |
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| Q |
118 |
agcacaatcttctgattcagttgctttccttgatttgttcgatcgatttcattttcgagccttatctcaatattatcgtatttagcct-ggtcttttccg |
216 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
29849862 |
agcacaatcttctaattcagttgctttccttgatttgttcgatcgatttcatttttgagccttatctcaatattatcgtattcagcctatgtcttttccc |
29849763 |
T |
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| Q |
217 |
caatttctagtgtttgcaatttcatgttcctttgtc |
252 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
29849762 |
caatttctagggtttgcaatttcatgttcctttgtc |
29849727 |
T |
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