View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5290_low_46 (Length: 252)

Name: NF5290_low_46
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5290_low_46
NF5290_low_46
[»] chr5 (3 HSPs)
chr5 (1-200)||(5976594-5976794)
chr5 (1-66)||(223627-223691)
chr5 (219-252)||(5976539-5976572)
[»] chr7 (5 HSPs)
chr7 (1-200)||(41515872-41516074)
chr7 (1-91)||(28325483-28325573)
chr7 (163-199)||(28325575-28325611)
chr7 (219-252)||(28325626-28325659)
chr7 (219-252)||(41515827-41515860)
[»] chr4 (1 HSPs)
chr4 (1-66)||(38554927-38554991)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 5976794 - 5976594
Alignment:
Q  1 aacaatagcaactaaactaatgaccataaattcatcgacccatgaacaacataaactttaattcctcacacacatccagatcattaacacgtcctcttca 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||     
T  5976794 aacaatagcaactaaactaatgaccataaattcatcaacccatgaacaacataaactttaattcctcaaacacacccagatcagtaacacgtcctcttcc 5976695  T
Q  101 tttatttctttcagtttttcta-nnnnnnnnnnaatttgaaaattctgaaatctctagcacctccaaaccgacaattcccattttaataatctcaaatgt 199  Q
    ||||||||||||||||||||||           ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  5976694 tttatttctttcagtttttctatttttttttttaatttgaaaattctgaaatctctagcacctccataccgaaaattcccattttaataatctcaaatgt 5976595  T
Q  200 c 200  Q
    |    
T  5976594 c 5976594  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 223627 - 223691
Alignment:
Q  1 aacaatagcaactaaactaatgaccataaattcatcgacccatgaacaacataaactttaattcct 66  Q
    ||||||||||||| || ||| || |||||||||||| ||| || ||||||||||||||||||||||    
T  223627 aacaatagcaactgaattaacgatcataaattcatcaacc-attaacaacataaactttaattcct 223691  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 5976572 - 5976539
Alignment:
Q  219 aataagcaaataaatagtgaatcatgaaatcaag 252  Q
    |||||||||||||| |||||||||||||||||||    
T  5976572 aataagcaaataaaaagtgaatcatgaaatcaag 5976539  T

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Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 41516074 - 41515872
Alignment:
Q  1 aacaatagcaactaaactaatgaccataaattcatcgacccatgaacaacataaactttaattcctcacacacatccagatcattaacacgtcctcttca 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||     
T  41516074 aacaatagcaactaaactaatgaccataaattcatcaacccatgaacaacataaactttaattcctcaaacacacccagatcagtaacacgtcctcttcc 41515975  T
Q  101 tttatttctttcagt---ttttctannnnnnnnnnaatttgaaaattctgaaatctctagcacctccaaaccgacaattcccattttaataatctcaaat 197  Q
    |||||||||||||||   |||| ||          |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41515974 tttatttctttcagttttttttttattttttttttaatttgaaaattctaaaatctctagcacctccaaatcgacaattcccattttaataatctcaaat 41515875  T
Q  198 gtc 200  Q
    |||    
T  41515874 gtc 41515872  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 28325483 - 28325573
Alignment:
Q  1 aacaatagcaactaaactaatgaccataaattcatcgacccatgaacaacataaactttaattcctcacacacatccagatcattaacacg 91  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| | ||| |||||||| |||||||    
T  28325483 aacaatagcaactaaactaatgaccatagattcatcaacccatgaacaacataaactttaattcgtcaaagacacccagatcagtaacacg 28325573  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 28325575 - 28325611
Alignment:
Q  163 ccaaaccgacaattcccattttaataatctcaaatgt 199  Q
    |||||||||||||||||||||||||||||||||||||    
T  28325575 ccaaaccgacaattcccattttaataatctcaaatgt 28325611  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 28325626 - 28325659
Alignment:
Q  219 aataagcaaataaatagtgaatcatgaaatcaag 252  Q
    |||||||||||||| |||||||||||||||||||    
T  28325626 aataagcaaataaaaagtgaatcatgaaatcaag 28325659  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 41515860 - 41515827
Alignment:
Q  219 aataagcaaataaatagtgaatcatgaaatcaag 252  Q
    |||||||||||||| |||||||||||||||||||    
T  41515860 aataagcaaataaaaagtgaatcatgaaatcaag 41515827  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38554991 - 38554927
Alignment:
Q  1 aacaatagcaactaaactaatgaccataaattcatcgacccatgaacaacataaactttaattcct 66  Q
    ||||||||||||| || ||| || |||||||||||| ||| |||||||||||||||||||||||||    
T  38554991 aacaatagcaactgaattaacgatcataaattcatcaacc-atgaacaacataaactttaattcct 38554927  T

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