View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_low_51 (Length: 235)
Name: NF5290_low_51
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 37390383 - 37390543
Alignment:
| Q |
50 |
tattcacattgtcatagtttgccactgaatgttgttaaatgagactaattaacatctagttcattattctgatggatttgtgcacataaaattcattaaa |
149 |
Q |
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| T |
37390383 |
tattcacattgtcatagtttgccactgaatgttgttaaatgagactaattaacatctggttcattattctgatggatttgtgcaca----------taaa |
37390472 |
T |
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| Q |
150 |
attcattttggaccaaggtccttggagtcaaatccaggaattatctcaaaataaatttcaacattatgttt |
220 |
Q |
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| T |
37390473 |
attcattttggaccaaggtccttggagtcaaatccaggaattatctcaaaataaatttcaacattatgttt |
37390543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 37381603 - 37381677
Alignment:
| Q |
146 |
taaaattcattttggaccaaggtccttggagtcaaatccaggaattatctcaaaataaatttcaacattatgttt |
220 |
Q |
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| T |
37381603 |
taaaattcattttggaccaaggtccttgaagtcaaatccaggaattatctcaatttagatttcaacattatgttt |
37381677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 37359411 - 37359485
Alignment:
| Q |
146 |
taaaattcattttggaccaaggtccttggagtcaaatccaggaattatctcaaaataaatttcaacattatgttt |
220 |
Q |
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| T |
37359411 |
taaaattcattttggaccaaggaccttggagccaaatccaaaaattatctaaatatatatttcaacattatgttt |
37359485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 37368653 - 37368579
Alignment:
| Q |
146 |
taaaattcattttggaccaaggtccttggagtcaaatccaggaattatctcaaaataaatttcaacattatgttt |
220 |
Q |
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| T |
37368653 |
taaaattcattttggaccaaggaccttggagccaaatccaaaaattatctaaatatatatttcaacattatgttt |
37368579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 37381520 - 37381564
Alignment:
| Q |
50 |
tattcacattgtcatagtttgccactgaatgttgttaaatgagac |
94 |
Q |
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| T |
37381520 |
tattcacattgtcataatttgccactgaatgttgttaaatgagac |
37381564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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