View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_low_53 (Length: 221)
Name: NF5290_low_53
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 28325885 - 28325759
Alignment:
| Q |
1 |
tcaatgttttggatttgtacccaaatctagatttccaaatctagatatttccaactcaatcatctcggaatccatcatctatacttgagatcttgtatat |
100 |
Q |
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| T |
28325885 |
tcaatgttttggatttgtacccaaatctagatttccaaatctagatatttccaactcaatcatctctgaatccatcatctatacttgagatcttgtatat |
28325786 |
T |
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| Q |
101 |
atgtttcaagatgtggccgttacacac |
127 |
Q |
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| T |
28325785 |
atgtttcaagatgcggccgttacacac |
28325759 |
T |
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Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 41515635 - 41515727
Alignment:
| Q |
35 |
ccaaatctagatatttccaactcaatcatctcggaatccatcatctatacttgagatcttgtatatatgtttcaagatgtggccgttacacac |
127 |
Q |
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| T |
41515635 |
ccaaatctagatatttccaactcaatcatctcggaatccatcatctatacttgagatcttgtatatatgtttcaagatgtggccgttacacac |
41515727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 5976343 - 5976435
Alignment:
| Q |
35 |
ccaaatctagatatttccaactcaatcatctcggaatccatcatctatacttgagatcttgtatatatgtttcaagatgtggccgttacacac |
127 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5976343 |
ccaaatctagatatttccaactcaatcatctctgaattcatcatctatacttgagatcttgtatatatgtttcaagatgtggccgttacacac |
5976435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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