View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290_low_57 (Length: 216)
Name: NF5290_low_57
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 5363059 - 5363256
Alignment:
| Q |
7 |
ctctgatcgtaaaggaaccgaactca---ctttgt-gggtccattcaaaaagagaaaagttatgatgatggaagaaaatagtagtataaaagatgaaaga |
102 |
Q |
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| T |
5363059 |
ctctggtcgtaaaggaaccgaactcagggttttgtggggtccattcaaaaagagaaaagttatgatgatggaagaaaatagtagtataaaagaagaaaga |
5363158 |
T |
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| Q |
103 |
ccatttcaaagacaccttgctggccactcaatgaagctatacaccttttaatgagattatattccccaaagcactaacccaacttgatggccgtccta |
200 |
Q |
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| T |
5363159 |
ccatttcaaagacaccttgctggccactcaatgaaactatacaccttttaatgagattatattccccaaagcactaacccaacttgatggccgtccta |
5363256 |
T |
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