View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5291-Insertion-10 (Length: 107)

Name: NF5291-Insertion-10
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5291-Insertion-10
NF5291-Insertion-10
[»] scaffold0727 (1 HSPs)
scaffold0727 (8-107)||(4254-4353)
[»] chr4 (1 HSPs)
chr4 (8-107)||(23552119-23552218)


Alignment Details
Target: scaffold0727 (Bit Score: 50; Significance: 4e-20; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 4353 - 4254
Alignment:
Q  8 aatcctagaggtaacaaagaattannnnnnncaaaatacctgtcaaacacagtgacaatcgnnnnnnntacacttcgcaattttaggagaacaacaaagt 107  Q
    ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||       ||||||||||| |||||||||||||| |||||    
T  4353 aatcctagaggtaacaaagaattatttttttcaaaatacctgtcaaacacagtgacaatcgaaaaaaatacacttcgcagttttaggagaacaaaaaagt 4254  T

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Target: chr4 (Bit Score: 50; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 23552218 - 23552119
Alignment:
Q  8 aatcctagaggtaacaaagaattannnnnnncaaaatacctgtcaaacacagtgacaatcgnnnnnnntacacttcgcaattttaggagaacaacaaagt 107  Q
    ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||       ||||||||||| |||||||||||||| |||||    
T  23552218 aatcctagaggtaacaaagaattatttttttcaaaatacctgtcaaacacagtgacaatcgaaaaaaatacacttcgcagttttaggagaacaaaaaagt 23552119  T

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