View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5291-Insertion-13 (Length: 509)
Name: NF5291-Insertion-13
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5291-Insertion-13 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 8 - 491
Target Start/End: Original strand, 53346205 - 53346680
Alignment:
| Q |
8 |
aaaatattacccgtggttgtcaatattttcatgtgcttaattttctaagataactgttgccaacatctttagctctacatagcagaatgtgtgtgcgagt |
107 |
Q |
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| T |
53346205 |
aaaatattacccgtggttgtcaatattttcatgtgcttaattttctaagataac----------atctttagctctacatagcagaatgtgtgtgcgagt |
53346294 |
T |
|
| Q |
108 |
tagcaacatcattatataacaatagaatgatttgaaagactttcaatcttccaacata---acgtggtaggaaaatccaataatcacctatttggatgga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53346295 |
tagcaacatcattatataacaatagaatgatttgaaagacattcaatcttccaacatactaacgtggtaggaaaatccaataatcacctatttggatggt |
53346394 |
T |
|
| Q |
205 |
ttactccagttggtagtgtagatgtaggacttgcgtggcattaatgtattgagttctgtgttacaattatgaagcaattacacgttgaataagtttacag |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
53346395 |
ttactccagttggtagtgtagatgtaggacttgcgtggcattaatgtattgagttctgtgttacaattatgaagcaattacacattgaataagtttgcag |
53346494 |
T |
|
| Q |
305 |
aaaagttatgcaacatcaatatgtctaaatatctaattatgagtcaccgttagtagcaattatgtattcataaatatatgatctgggtagggggtgcatt |
404 |
Q |
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|| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53346495 |
aacagttatgcaacattaatatgtctaaatatctaattatgagtcacagttagtagcaattatgtattcataaatatatgatctgggta-ggggtgcatt |
53346593 |
T |
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| Q |
405 |
tggtagatttgtacgaagttcattctcttgaattaagcgttacctcaattgtacttaaatactcactccgtcttactattattatct |
491 |
Q |
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| T |
53346594 |
tggtagatttgtacgaagttcattctcttgaattaagcgttacctcaattgtacttaaatactcactccgtcttaccattattatct |
53346680 |
T |
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