View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5291-Insertion-6 (Length: 505)

Name: NF5291-Insertion-6
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5291-Insertion-6
NF5291-Insertion-6
[»] chr6 (9 HSPs)
chr6 (8-505)||(717868-718366)
chr6 (7-273)||(712607-712873)
chr6 (8-273)||(702566-702831)
chr6 (7-267)||(710834-711094)
chr6 (414-499)||(702982-703067)
chr6 (414-499)||(712371-712456)
chr6 (7-235)||(722384-722612)
chr6 (7-279)||(716459-716731)
chr6 (414-496)||(711242-711324)
[»] chr4 (3 HSPs)
chr4 (414-488)||(5279096-5279170)
chr4 (414-488)||(5281917-5281991)
chr4 (414-488)||(5287104-5287178)
[»] chr5 (2 HSPs)
chr5 (414-488)||(20353314-20353388)
chr5 (414-488)||(20358497-20358571)
[»] chr2 (1 HSPs)
chr2 (414-488)||(6236083-6236157)
[»] chr1 (1 HSPs)
chr1 (110-171)||(35313394-35313455)


Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 8 - 505
Target Start/End: Original strand, 717868 - 718366
Alignment:
Q  8 gtaccctctaacactataagaatctcagtggctctaggatgagtatgtggaggatttagtcccctagatgcgaagtcaatgcgagcaagagagataccta 107  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  717868 gtaccctctaacactataagtatctcagtggctctagggtgagtatgtggaggatttagtcccctagatgcgaagtcaatgcgagcaagagagataccta 717967  T
Q  108 aagtgtttagtcctagtatatcattaaccgtaaccggtgtcacttttgaacccagtggatttgacgtgtttccttctttcactgagaaaaagaaatcatt 207  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  717968 aagtgtttagtcctagtatatcattaactgtaaccggtgtcacttttgaacccagtggatttgatgtgtttccttcttttactgagaaaaagaaatcatt 718067  T
Q  208 tggtgtagcaagctttggatccttgcagactttgccattcacaaaaactgcaaaacaaattcattaaagaaatcatatactactcttatatatgtatata 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  718068 tggtgtagcaagctttggatccttgcagactttgccattcacaaaaactgcaaaacaaattcattaaagaaatcatatactactcttatatatgtatata 718167  T
Q  308 tcaatgaaatttctagatgatagtttcaattgactcaactagctgaaccagaaaactaaaaatagataaagaaatctttaaccaaatattgtgaatttaa 407  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  718168 tcaatgaaatttctagatgatagtttcaattgactcaactagttgaaccagaaaactaaaaatagataaagaaatctttaaccaaatattgttaatttaa 718267  T
Q  408 aagag-ttacataccaccattcttggtgtcattgatagccacacaaaagtcttgtagagggctgggatcaaaggcaaaggcacatgatgctaaggccaa 505  Q
    |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  718268 aagagcatacataccaccattcttggtgtcattgatagccacacaaaagtcttgtagagggctgggatcaaaggcaaaggcacatgatgctaaggccaa 718366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 712873 - 712607
Alignment:
Q  7 agtaccctctaacactataagaatctcagtggctctaggatgagtatgtggaggatttagtcccctagatgcgaagtcaatgcgagcaagagagatacct 106  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  712873 agtaccctccaacactataagaatctcagtggctctagggtgagtatgtggaggatttagtcccctagatgcgaagtcaatgcgagcaagagagatacct 712774  T
Q  107 aaagtgtttagtcctagtatatcattaaccgtaaccggtgtcacttttgaacccagtggatttgacgtgtttccttctttcactgagaaaaagaaatcat 206  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||    
T  712773 aaagtgtttagtcctagtatatcattaactgtaaccggtgtcacttttgaacccagtggatttgatatgtttccttctttcactgagaaaaaaaaatcat 712674  T
Q  207 ttggtgtagcaagctttggatccttgcagactttgccattcacaaaaactgcaaaacaaattcatta 273  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||    
T  712673 ttggtgtagcaagctttggatccttgcaaaatttgccattcacaaaaactgcaaaacaaaatcatta 712607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 702566 - 702831
Alignment:
Q  8 gtaccctctaacactataagaatctcagtggctctaggatgagtatgtggaggatttagtcccctagatgcgaagtcaatgcgagcaagagagataccta 107  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  702566 gtaccctctaacactataagtatctcagtggctctagggtgagtatgtggaggatttagtccccttgatgcgaagtcaatgcgagcaagagagataccta 702665  T
Q  108 aagtgtttagtcctagtatatcattaaccgtaaccggtgtcacttttgaacccagtggatttgacgtgtttccttctttcactgagaaaaagaaatcatt 207  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  702666 aagtgtttagtcctagtatatcattaactgtaaccggtgtcacttttgaacccagtggatttgatgtgtttccttcttttactgagaaaaagaaatcatt 702765  T
Q  208 tggtgtagcaagctttggatccttgcagactttgccattcacaaaaactgcaaaacaaattcatta 273  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||    
T  702766 tggtgtagcaagctttggatccttgcaaaatttgccattcacaaaaactgcaaaacaaaatcatta 702831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 710834 - 711094
Alignment:
Q  7 agtaccctctaacactataagaatctcagtggctctaggatgagtatgtggaggatttagtcccctagatgcgaagtcaatgcgagcaagagagatacct 106  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  710834 agtaccctccaacactataagaatctcagtggctctagggtgagtatgtgggggatttagtccccttgatgcgaagtcaatgcgagcaagagagatacct 710933  T
Q  107 aaagtgtttagtcctagtatatcattaaccgtaaccggtgtcacttttgaacccagtggatttgacgtgtttccttctttcactgagaaaaagaaatcat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  710934 aaagtgtttagtcctagtatatcattaaccgtaaccggtgtcacttttgaacccagtggatttgatgtgtttccttctttcactgagaaaaagaaatcat 711033  T
Q  207 ttggtgtagcaagctttggatccttgcagactttgccattcacaaaaactgcaaaacaaat 267  Q
    ||||||||||||||||||||| ||| |||| |||||| |||||||| ||||||||| ||||    
T  711034 ttggtgtagcaagctttggattcttacagaatttgccgttcacaaacactgcaaaaaaaat 711094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 414 - 499
Target Start/End: Original strand, 702982 - 703067
Alignment:
Q  414 tacataccaccattcttggtgtcattgatagccacacaaaagtcttgtagagggctgggatcaaaggcaaaggcacatgatgctaa 499  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||    
T  702982 tacataccaccattcttggtgtcattgatagccacacaaaagtcctgtaaagggctgggatcaaaggcaaaggcacaagatgctaa 703067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 414 - 499
Target Start/End: Complemental strand, 712456 - 712371
Alignment:
Q  414 tacataccaccattcttggtgtcattgatagccacacaaaagtcttgtagagggctgggatcaaaggcaaaggcacatgatgctaa 499  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||    
T  712456 tacataccaccattcttggtgtcattgatagccacacaaaagtcctgtaaagggctgggatcaaaggcaaaggcacaagatgctaa 712371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 722612 - 722384
Alignment:
Q  7 agtaccctctaacactataagaatctcagtggctctaggatgagtatgtggaggatttagtcccctagatgcgaagtcaatgcgagcaagagagatacct 106  Q
    |||||| |||||||| ||||| ||||||||||||||||| ||||| |||||||||||||  ||| ||| ||| |||||||| ||||||||||||| |||     
T  722612 agtaccatctaacaccataagtatctcagtggctctagggtgagtgtgtggaggatttatacccttaggtgcaaagtcaatacgagcaagagagacacca 722513  T
Q  107 aaagtgtttagtcctagtatatcattaaccgtaaccggtgtcacttttgaacccagtggatttgacgtgtttccttctttcactgagaaaaagaaatcat 206  Q
    | |||||||| ||||| ||| |||||||| || ||   ||||||||  | ||| | |||| | ||      ||||||||| |||||||||||||||||||    
T  722512 agagtgtttaatcctaatatctcattaactgtgactaatgtcacttgagtaccaactggactcgatacaactccttcttttactgagaaaaagaaatcat 722413  T
Q  207 ttggtgtagcaagctttggatccttgcag 235  Q
     || |||| |||| |||||||| ||||||    
T  722412 ctgctgtaacaagttttggatctttgcag 722384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 716731 - 716459
Alignment:
Q  7 agtaccctctaacactataagaatctcagtggctctaggatgagtatgtggaggatttagtcccctagatgcgaagtcaatgcgagcaagagagatacct 106  Q
    ||||||||| ||||||||||| |||||||  |||||||| |||| ||||||||||||||| ||| | | ||| || ||||| ||||||| |||||||||     
T  716731 agtaccctccaacactataagtatctcagctgctctagggtgagcatgtggaggatttagaccctttggtgcaaaatcaatacgagcaaaagagatacca 716632  T
Q  107 aaagtgtttagtcctagtatatcattaaccgtaaccggtgtcacttttgaacccagtggatttgacgtgtttccttctttcactgagaaaaagaaatcat 206  Q
    | ||| |||| ||||| ||| ||| |||| ||     |||||||||  ||||| ||| || ||||  ||||| ||||||| | |||||||||||||||||    
T  716631 agagtatttaatcctaatatctcactaactgtgggtagtgtcacttgcgaaccaagttgacttgatatgttttcttcttttattgagaaaaagaaatcat 716532  T
Q  207 ttggtgtagcaagctttggatccttgcagactttgccattcacaaaaactgcaaaacaaattcattaaagaaa 279  Q
     ||||||| |||| ||||| || ||| ||  ||| |||||||| || |||| |||  ||||| || |||||||    
T  716531 ctggtgtaacaagttttggttctttgtagcattttccattcaccaacactgaaaattaaattgatcaaagaaa 716459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 414 - 496
Target Start/End: Original strand, 711242 - 711324
Alignment:
Q  414 tacataccaccattcttggtgtcattgatagccacacaaaagtcttgtagagggctgggatcaaaggcaaaggcacatgatgc 496  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  711242 tacataccacccgttttggtgtcattgatagccacacaaaagtcttgtagagggctaggatcaaatgcaaaggcacaagatgc 711324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 414 - 488
Target Start/End: Original strand, 5279096 - 5279170
Alignment:
Q  414 tacataccaccattcttggtgtcattgatagccacacaaaagtcttgtagagggctgggatcaaaggcaaaggca 488  Q
    |||||||||||||  |||| ||| ||||| || |||||||||||||| ||||||||||||||| | |||||||||    
T  5279096 tacataccaccatctttggggtctttgattgcaacacaaaagtcttggagagggctgggatcataagcaaaggca 5279170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 488
Target Start/End: Complemental strand, 5281991 - 5281917
Alignment:
Q  414 tacataccaccattcttggtgtcattgatagccacacaaaagtcttgtagagggctgggatcaaaggcaaaggca 488  Q
    |||||||||||||  |||| ||| ||||| || |||||||||||||| ||||||||||| ||| | |||||||||    
T  5281991 tacataccaccatctttggggtctttgattgcaacacaaaagtcttggagagggctggggtcataagcaaaggca 5281917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 488
Target Start/End: Original strand, 5287104 - 5287178
Alignment:
Q  414 tacataccaccattcttggtgtcattgatagccacacaaaagtcttgtagagggctgggatcaaaggcaaaggca 488  Q
    |||||||||||||  |||| ||| ||||| || |||||||||||||| ||||||||||| ||| | |||||||||    
T  5287104 tacataccaccatctttggggtctttgattgcaacacaaaagtcttggagagggctggggtcataagcaaaggca 5287178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 488
Target Start/End: Complemental strand, 20353388 - 20353314
Alignment:
Q  414 tacataccaccattcttggtgtcattgatagccacacaaaagtcttgtagagggctgggatcaaaggcaaaggca 488  Q
    |||||||||||||  |||| ||| ||||| || |||||||||||||| ||||||||||| ||| | |||||||||    
T  20353388 tacataccaccatctttggggtctttgattgcaacacaaaagtcttggagagggctggggtcataagcaaaggca 20353314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 488
Target Start/End: Original strand, 20358497 - 20358571
Alignment:
Q  414 tacataccaccattcttggtgtcattgatagccacacaaaagtcttgtagagggctgggatcaaaggcaaaggca 488  Q
    |||||||||||||  |||| ||| ||||| || |||||||||||||| ||||||||||| ||| | |||||||||    
T  20358497 tacataccaccatctttggggtctttgattgcaacacaaaagtcttggagagggctggggtcataagcaaaggca 20358571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 488
Target Start/End: Original strand, 6236083 - 6236157
Alignment:
Q  414 tacataccaccattcttggtgtcattgatagccacacaaaagtcttgtagagggctgggatcaaaggcaaaggca 488  Q
    |||||||||||||  |||| ||| ||||| || |||||||||||||| ||||||||||| ||| | |||||||||    
T  6236083 tacataccaccatctttggggtctttgattgcaacacaaaagtcttggagagggctggggtcataagcaaaggca 6236157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 35313455 - 35313394
Alignment:
Q  110 gtgtttagtcctagtatatcattaaccgtaaccggtgtcacttttgaacccagtggatttga 171  Q
    ||||| ||||||| ||| ||||||||||| || || ||||||||||| || |||||||||||    
T  35313455 gtgttgagtcctaatatttcattaaccgtcactggagtcacttttgatccgagtggatttga 35313394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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