View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5291R-Insertion-13 (Length: 253)
Name: NF5291R-Insertion-13
Description: NF5291R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5291R-Insertion-13 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 13852515 - 13852271
Alignment:
| Q |
9 |
tactcggctgtgaaccccatttagtgacaagatcatcaaagcttgattctgaagctgcataaaatgatgctttcttttcttcataagggatgataaaatc |
108 |
Q |
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| T |
13852515 |
tactcggctgtgaaccccatttagtgacaagatcatcaaagcttgattctgaagctgcataaaatgatgctttcttttcttcataagggatgataaaatc |
13852416 |
T |
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| Q |
109 |
atgaacatgaagtgttccttttgtcccaacagcagttatatccattgttaggttagataagaaagagcaatagaatgttgctactcttccatcttgccag |
208 |
Q |
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| T |
13852415 |
atgaacatgaagtgttccttttgtcccaacagcagttatatccattgttaggttagataagaaagagcaatagaatgttgctactcttccatcttgccag |
13852316 |
T |
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| Q |
209 |
tataaagaagcaccgcaagataataatactccagctttattaagc |
253 |
Q |
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| T |
13852315 |
tataaagaagcaccgcaagataataatactccagctttattaagc |
13852271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 45 - 253
Target Start/End: Complemental strand, 13856358 - 13856150
Alignment:
| Q |
45 |
caaagcttgattctgaagctgcataaaatgatgctttcttttcttcataagggatgataaaatcatgaacatgaagtgttccttttgtcccaacagcagt |
144 |
Q |
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| T |
13856358 |
caaagcttgattttgaagctgcataaaatgatgctttcttttcttcataagggatgataaaatcatgaacatgaagtgttccttttgtcccaacagcagt |
13856259 |
T |
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| Q |
145 |
tatatccattgttaggttagataagaaagagcaatagaatgttgctactcttccatcttgccagtataaagaagcaccgcaagataataatactccagct |
244 |
Q |
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| T |
13856258 |
tatatccattgttaagttagataagaaagagcaatagaatgttgctactcttccatcttcccaatataaagaagcaccacaagataataatactccagct |
13856159 |
T |
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| Q |
245 |
ttattaagc |
253 |
Q |
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| T |
13856158 |
ttattaagc |
13856150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 43865385 - 43865492
Alignment:
| Q |
86 |
tcttcataagggatgataaaatcatgaacatgaagtgttccttttgtcccaacagcagttatatccattgttaggttagataagaaagagcaatagaatg |
185 |
Q |
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||||||||||| || |||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||| | ||| | |||||||| |||| |||| |
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| T |
43865385 |
tcttcataaggaataataaaatcatgaacatgaagagttccttttgttccaatagctgttatatccattgtcaagtttgccaagaaagaacaatgaaatg |
43865484 |
T |
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| Q |
186 |
ttgctact |
193 |
Q |
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| T |
43865485 |
tagctact |
43865492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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