View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5291R-Insertion-3 (Length: 919)
Name: NF5291R-Insertion-3
Description: NF5291R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5291R-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 601; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 254 - 918
Target Start/End: Original strand, 53477801 - 53478461
Alignment:
| Q |
254 |
ggttgaatctgtatggatgtttcttcatgtgaagatataatctagattatgttcctctttttcaaaatttgtgttttcctctcccctaattccgtttcct |
353 |
Q |
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| T |
53477801 |
ggttgaatctgtatggatgtttcttcatgtgaagatataatctagattatgttcctctttttcaaaatttgtgttt-cctctcccctaattccgtttcct |
53477899 |
T |
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| Q |
354 |
agaagacttgatttcctttccatcatagtcgtgnnnnnnnnnattaaatggatgtttcttcacgttaattatgcttgggttgcacttacaatttgtaggt |
453 |
Q |
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| T |
53477900 |
agaagacttgatttcctttccatcatagtcgtgttttttt--attaaatggatgtttcttcacgttaattatgcttgggttgcacttacaatttgtaggt |
53477997 |
T |
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| Q |
454 |
gtgattagacagaattagagtttttcaagtgtagtttgacatgcttctatcattatgttttacatcaatgacttattcagtaatttccgtaggaatgtct |
553 |
Q |
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| T |
53477998 |
gtgattagacagaattagagtttttcaagtgtagtttgacatgcttctatcattatgttttacatcaatgacttattcagtgattttcgtaggaacgtct |
53478097 |
T |
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| Q |
554 |
tccacttctcacgatcaatccacttagttaaacgcatgaagaaaaataacattataagaattgtctcgttagggagaaattgaaagaaaaataccgaatt |
653 |
Q |
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| T |
53478098 |
tccacttctcacgatcaatccacttagttaaacgcatgaagaaaaataacattataagaattgtctcgttagggagaaattgaaagaaaaataccgaatt |
53478197 |
T |
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| Q |
654 |
gaataaagaattacaagaccacaattttattcaaatgattccaagtttaactaaaacatatgatagcttaacacaaataatgacctcaaaattaagacgt |
753 |
Q |
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| T |
53478198 |
gaataaagaattacaagaccacaattttattcaaatgattccaagtttaactaaaacatatgatagcttaacacaaataatgacctcaaaattaagacgt |
53478297 |
T |
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| Q |
754 |
tgaaaacctacatatgtgaagagttatcaatcaatgaaacatttttgttgaatattaagtcaccatgtgagactcttcaattgtgacgtaccaagtaggt |
853 |
Q |
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| T |
53478298 |
tgaaaacctacatatg-gaagagttatcaatcaatgaaacatttttgttgaatattaagtcaccatgtgagactcttcaattgtgacgtaccaagtaggt |
53478396 |
T |
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| Q |
854 |
tctctatatgtattaaccacaagttagttgaattcaatcatgaagtaattgatgatattaaatgg |
918 |
Q |
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| T |
53478397 |
tctctatatgtattaaccccaagttagttgaattcaatcatgaagtaattgatgatattaaatgg |
53478461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 53477556 - 53477741
Alignment:
| Q |
9 |
aaactaactcatgaatcatgttcagtgaaacaataaccaaagaatttaacacgtaatggacactaaaaggttataaatcatatccctttaatttggtttt |
108 |
Q |
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| T |
53477556 |
aaactaactcatgaatcatgttcagtgaaacaataaccaaagaatttaacacgtaatggacactaaaaggttataaatcatatccctttaatttgctttt |
53477655 |
T |
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| Q |
109 |
tactagctagtgtggtgatggaacaaagaaatgctgtatccaacaagaaataagaccatgcatattacatgtcaaaatgattccac |
194 |
Q |
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| T |
53477656 |
tactagctagtgtggtgatggaacaaagaaatgctgtatccaacaagaaataagaccatgcatattacatgtcaaaatgattccac |
53477741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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