View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5291R-Insertion-6 (Length: 290)
Name: NF5291R-Insertion-6
Description: NF5291R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5291R-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 7416569 - 7416760
Alignment:
| Q |
9 |
attttgaggagaac-aatgccttttccaactctagcatttcgaagtagacatccattgttcatggattgtctattatggtgcctcattttattgtttgtt |
107 |
Q |
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| T |
7416569 |
attttgaggagaaagaatgccttttccaactctagcatttcgaagtagacatccattgttcatggattgtctattatggtgcctcattttattgtttgtt |
7416668 |
T |
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| Q |
108 |
cagagaagtagttggtgtaaatgctacttctaattcaccatttatacgcaataatgtaattatactattactatgcagatttttgattgaag |
199 |
Q |
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| T |
7416669 |
cagagaagtagttggtgtaaatgctacttctaattcaccatttatacgcaataatgtaattatactattactatgcagatttttgattgaag |
7416760 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 52765575 - 52765639
Alignment:
| Q |
93 |
attttattgtttgttcagagaagtagttggtgtaaatgctacttctaattcaccatttatacgca |
157 |
Q |
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| T |
52765575 |
attttattggtttttcagagaagtagttggtgtaaatgctagttgcaattctccatttatgcgca |
52765639 |
T |
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