View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5292-Insertion-2 (Length: 260)
Name: NF5292-Insertion-2
Description: NF5292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5292-Insertion-2 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 49923288 - 49923035
Alignment:
| Q |
8 |
agaacaacaccaggaacaagtttttcagggagaatggatccaacaatggccaagtaagtaaaaaa-tcccacgagtaaaacaacctgacccagattcgta |
106 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
49923288 |
agaacaacaccaggaacaagttttccagggagaatggatccaacaatggccaagtaagtaaaaaaatcccacgagtaaaacaacctgacccagattcgta |
49923189 |
T |
|
| Q |
107 |
aaatgcaaaaagaagtgaaattgatgattgaattgtaataaatcattgaattaaagaaatgggttgtgagtagtttggactaacagagttccatgatgga |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49923188 |
aaatgcaaaaagaaatgaaattgatgattgaattgtaataaatcattgaattaaagaaatgggttgtgagtagtttggactaacagagttccatgatgga |
49923089 |
T |
|
| Q |
207 |
cttagagcgggaatgagaaaattcagatccatgtatgaaactatgtagttttca |
260 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| |||||||||| |||||||| |
|
|
| T |
49923088 |
cttagaacgggaatgagaaaatccagatccatgtgtgaaactatgcagttttca |
49923035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 26777787 - 26778039
Alignment:
| Q |
8 |
agaacaacaccaggaacaagtttttcagggagaatggatccaacaatggccaagtaagtaaaaaatcccacgagtaaaacaacctgacccagattcgtaa |
107 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| ||| | |||||| |||||||||||||||||| || |
|
|
| T |
26777787 |
agaacaacaccaggaacaagctttccagggagaatggatccaacaatggctaagtaagtaaaaaaacccgcaagtaaagcaacctgacccagattcgaaa |
26777886 |
T |
|
| Q |
108 |
aatgcaaaaagaagtgaaattgatgattgaattgtaataaatcattgaattaaagaaatgggttgtgagtagtttggactaacagagttccatgatggac |
207 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
26777887 |
aatgcaaaaagatatgaaattgatgacagaattggaataaatgattgaattaaagtaatgggttgtgagtagtttgaactaacggagttccatgatggaa |
26777986 |
T |
|
| Q |
208 |
ttagagcgggaatgagaaaattcagatccatgtatgaaactatgtagttttca |
260 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| ||| |||||| |||||||| |
|
|
| T |
26777987 |
ttagagcgtgaatgagaaaatccagatccatgtgtgacactatgcagttttca |
26778039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University